Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002079

Physical Location & Seq

Genomic Coordinates Forward (+)

22895268 .. 22897732

Gene Structure 2465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G61850.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGATGCTACGAAGTGGACTCAGGGTTTTCAAGAAATGATAAACGTAAAGCCAATGGAGCAAATGATTTCTAGCACCAACAACAACACACCGCAACAACAACCAACATTCATCGCCACCAACACAAGGCCAAACGCCACCGCATCCAATGGTGGCTCCGGAGGAAATACCAACAACACGGCTACGATGGAAACTAGAAAGGCGAGGCCACAAGAGAAAGTAAATTGTCCAAGATGCAACTCAACAAACACAAAGTTCTGTTATTACAACAACTACAGTCTCACGCAACCAAGATACTTCTGCAAAGGTTGTCGAAGGTATTGGACCGAAGGTGGCTCTCTTCGTAACGTCCCAGTCGGAGGTAGCTCAAGAAAGAACAAGAGATCCTCTACACCTTTAGCTTCACCTTCTAATCCCAAACTTCCAGATCTAAACCCACCGATTCTTTTCTCAAGCCAAATCCCTAATAAGTCAAATAAAGATCTCAACTTGCTATCTTTCCCGGTCATGCAAGATCATCATCATCATGCTCTTGAGCTTCTAAGATCCAATGGAGTCTCTTCAAGAGGCATGAACACGTTCTTGCCTGGTCAAATGATGGATTCAAACTCAGTCCTGTACTCATCTTTAGGGTTTCCAACAATGCCTGATTACAAACAGAGTAATAACAACCTTTCATTCTCCATTGATCATCATCAAGGGATTGGACATAACACCATCAACAGTAACCAAAGAGCTCAAGATAACAATGATGACATGAATGGAGCAAGTAGGGTTTTGTTCCCTTTTTCAGACATGAAAGAGCTTTCAAGCACAACCCAAGAGAAGAGTCATGGTAATAATACATATTGGAATGGGATGTTCAGTAATACAGGAGGATCTTCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009415 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010029 GO:0010030 GO:0010035 GO:0010114 GO:0010161 GO:0010371 GO:0010372 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0042221 GO:0043455 GO:0045828 GO:0045834 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0090351 GO:0104004 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

296

Amino Acids

32.97

Weight (kDa)

9.4

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	60 - 116	4.7e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46590 AT2G46590 AT3G61850 AT3G61850 AT3G61850 AT3G61850 AT3G61850
fragaria_vesca	FvH4_7g17000 FvH4_7g17000 FvH4_7g17000 FvH4_7g32170 FvH4_7g32170 FvH4_7g32170
malus_domestica	MD01G1084700.v1.1 MD01G1224500.v1.1 MD07G1153300.v1.1 MD07G1295200.v1.1
prunus_persica	Prupe.2G192300_v2.0.a1 Prupe.2G192300_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1
pyrus_communis	pycom01g23320 pycom07g26780
rosa_chinensis	RchiOBHm_Chr1g0360381 RchiOBHm_Chr1g0381791
rosa_laevigata	RLG00000026205 RLG00000027812
rosa_multiflora	Rmu_sc0008418.1_g000008 Rmu_ssc0000368.1_g000076
rosa_roxburghii	Rroxscaffold_4G00278450 Rroxscaffold_4G00296170
rosa_rugosa	Rorug01G0276400 Rorug01G0276500 Rorug01G0431000
rosa_samantha	Rh1AG290500 Rh1AG454400 Rh1BG255600 Rh1CG273300 Rh1CG426000 Rh1DG285400 Rh1DG443700
rosa_wichuraiana	Rw1G025720 Rw1G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	158
AciI	CCGC	2 cut(s)	92, 141
AclWI	GGATC	3 cut(s)	378, 540, 886
AfaI	GTAC	1 cut(s)	620
AfiI	CCNNNNNNNGG	2 cut(s)	126, 359
AflIII	ACRYGT	1 cut(s)	576
AgsI	TTSAA	4 cut(s)	32, 564, 606, 810
AjnI	CCWGG	1 cut(s)	586
AloI	GAACNNNNNNTCC	2 cut(s)	368, 400
AluBI	AGCT	5 cut(s)	366, 401, 538, 737, 805
AluI	AGCT	5 cut(s)	366, 401, 538, 737, 805
Alw21I	GWGCWC	1 cut(s)	739
Alw26I	GTCTC	2 cut(s)	284, 562
AlwI	GGATC	3 cut(s)	378, 540, 886
Aor13HI	TCCGGA	1 cut(s)	158
AoxI	GGCC	2 cut(s)	128, 206
Asp700I	GAANNNNTTC	1 cut(s)	578
AspS9I	GGNCC	1 cut(s)	324
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	396
AvaII	GGWCC	1 cut(s)	324
BanII	GRGCYC	1 cut(s)	739
Bbv12I	GWGCWC	1 cut(s)	739
BccI	CCATC	3 cut(s)	181, 592, 725
BceAI	ACGGC	1 cut(s)	195
BciT130I	CCWGG	1 cut(s)	588
BclI	TGATCA	1 cut(s)	688
BcnI	CCSGG	1 cut(s)	503
BcoDI	GTCTC	2 cut(s)	284, 562
BfaI	CTAG	2 cut(s)	72, 195
BfmI	CTRYAG	1 cut(s)	274
BglII	AGATCT	2 cut(s)	427, 481
Bme1390I	CCNGG	2 cut(s)	503, 588
Bme18I	GGWCC	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	324
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	2 cut(s)	503, 588
BmrI	ACTGGG	1 cut(s)	347
BmsI	GCATC	2 cut(s)	152, 224
BmuI	ACTGGG	1 cut(s)	347
BpuEI	CTTGAG	4 cut(s)	352, 436, 554, 723
BpuMI	CCSGG	1 cut(s)	503
BsaBI	GATNNNNATC	2 cut(s)	519, 693
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 359
Bse1I	ACTGG	1 cut(s)	353
Bse8I	GATNNNNATC	2 cut(s)	519, 693
BseAI	TCCGGA	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	588
BseGI	GGATG	3 cut(s)	10, 143, 864
BseJI	GATNNNNATC	2 cut(s)	519, 693
BseLI	CCNNNNNNNGG	2 cut(s)	126, 359
BseMII	CTCAG	2 cut(s)	35, 624
BseNI	ACTGG	1 cut(s)	353
BshFI	GGCC	2 cut(s)	130, 208
BsiHKAI	GWGCWC	1 cut(s)	739
BsiSI	CCGG	2 cut(s)	159, 503
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	2 cut(s)	126, 359
BsmAI	GTCTC	2 cut(s)	284, 562
BsmFI	GGGAC	1 cut(s)	335
BsnI	GGCC	2 cut(s)	130, 208
Bsp1286I	GDGCHC	1 cut(s)	739
Bsp13I	TCCGGA	1 cut(s)	158
Bsp143I	GATC	7 cut(s)	383, 427, 481, 514, 545, 688, 878
BspACI	CCGC	2 cut(s)	92, 141
BspANI	GGCC	2 cut(s)	130, 208
BspCNI	CTCAG	2 cut(s)	34, 623
BspEI	TCCGGA	1 cut(s)	158
BspLI	GGNNCC	1 cut(s)	157
BspPI	GGATC	3 cut(s)	378, 540, 886
BsrI	ACTGG	1 cut(s)	353
BssMI	GATC	7 cut(s)	383, 427, 481, 514, 545, 688, 878
Bst2UI	CCWGG	1 cut(s)	588
Bst4CI	ACNGT	2 cut(s)	278, 725
Bst6I	CTCTTC	3 cut(s)	345, 565, 821
BstDEI	CTNAG	3 cut(s)	21, 542, 610
BstF5I	GGATG	3 cut(s)	10, 143, 864
BstKTI	GATC	7 cut(s)	386, 430, 484, 517, 548, 691, 881
BstMAI	GTCTC	2 cut(s)	284, 562
BstMBI	GATC	7 cut(s)	383, 427, 481, 514, 545, 688, 878
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNI	CCWGG	1 cut(s)	588
BstSCI	CCNGG	2 cut(s)	501, 586
BstSFI	CTRYAG	1 cut(s)	274
BstX2I	RGATCY	5 cut(s)	383, 427, 481, 545, 878
BstYI	RGATCY	5 cut(s)	383, 427, 481, 545, 878
BsuRI	GGCC	2 cut(s)	130, 208
BtgZI	GCGATG	1 cut(s)	97
BtsCI	GGATG	3 cut(s)	10, 143, 864
Cfr13I	GGNCC	1 cut(s)	324
Csp6I	GTAC	1 cut(s)	619
CviAII	CATG	7 cut(s)	508, 527, 571, 757, 796, 833, 885
CviQI	GTAC	1 cut(s)	619
DdeI	CTNAG	3 cut(s)	21, 542, 610
DpnI	GATC	7 cut(s)	385, 429, 483, 516, 547, 690, 880
DpnII	GATC	7 cut(s)	383, 427, 481, 514, 545, 688, 878
Eam1104I	CTCTTC	3 cut(s)	345, 565, 821
EarI	CTCTTC	3 cut(s)	345, 565, 821
Ecl136II	GAGCTC	1 cut(s)	737
Eco24I	GRGCYC	1 cut(s)	739
Eco47I	GGWCC	1 cut(s)	324
Eco53kI	GAGCTC	1 cut(s)	737
EcoICRI	GAGCTC	1 cut(s)	737
EcoRII	CCWGG	1 cut(s)	586
EcoT38I	GRGCYC	1 cut(s)	739
FaeI	CATG	7 cut(s)	511, 530, 574, 760, 799, 836, 888
FaiI	YATR	9 cut(s)	509, 528, 572, 711, 758, 797, 834, 847, 886
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	7 cut(s)	507, 526, 570, 756, 795, 832, 884
FbaI	TGATCA	1 cut(s)	688
FokI	GGATG	3 cut(s)	17, 130, 871
FriOI	GRGCYC	1 cut(s)	739
FspBI	CTAG	2 cut(s)	72, 195
HaeIII	GGCC	2 cut(s)	130, 208
HapII	CCGG	2 cut(s)	159, 503
Hin1II	CATG	7 cut(s)	511, 530, 574, 760, 799, 836, 888
HinfI	GANTC	5 cut(s)	19, 442, 555, 602, 829
HpaII	CCGG	2 cut(s)	159, 503
HphI	GGTGA	1 cut(s)	396
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	2 cut(s)	359, 793
Hpy188III	TCNNGA	7 cut(s)	32, 159, 369, 425, 533, 564, 740
Hpy8I	GTNNAC	1 cut(s)	18
HpyAV	CCTTC	3 cut(s)	309, 323, 417
HpyCH4III	ACNGT	2 cut(s)	278, 725
HpyCH4IV	ACGT	3 cut(s)	45, 348, 578
HpyCH4V	TGCA	3 cut(s)	237, 303, 511
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	3 cut(s)	21, 542, 610
HpySE526I	ACGT	3 cut(s)	45, 348, 578
Hsp92II	CATG	7 cut(s)	511, 530, 574, 760, 799, 836, 888
Kpn2I	TCCGGA	1 cut(s)	158
Ksp22I	TGATCA	1 cut(s)	688
Kzo9I	GATC	7 cut(s)	383, 427, 481, 514, 545, 688, 878
LmnI	GCTCC	3 cut(s)	58, 161, 764
LweI	GCATC	2 cut(s)	152, 224
MaeI	CTAG	2 cut(s)	72, 195
MaeII	ACGT	3 cut(s)	45, 348, 578
MaeIII	GTNAC	2 cut(s)	344, 725
MalI	GATC	7 cut(s)	385, 429, 483, 516, 547, 690, 880
MboI	GATC	7 cut(s)	383, 427, 481, 514, 545, 688, 878
MboII	GAAGA	4 cut(s)	332, 552, 838, 873
MflI	RGATCY	5 cut(s)	383, 427, 481, 545, 878
MhlI	GDGCHC	1 cut(s)	739
MluCI	AATT	1 cut(s)	223
MlyI	GAGTC	3 cut(s)	13, 564, 838
MmeI	TCCRAC	2 cut(s)	337, 662
MnlI	CCTC	6 cut(s)	155, 198, 353, 397, 560, 869
MroI	TCCGGA	1 cut(s)	158
MroXI	GAANNNNTTC	1 cut(s)	578
MslI	CAYNNNNRTG	1 cut(s)	525
MspI	CCGG	2 cut(s)	159, 503
MspR9I	CCNGG	2 cut(s)	503, 588
MvaI	CCWGG	1 cut(s)	588
MwoI	GCNNNNNNNGC	1 cut(s)	58
NciI	CCSGG	1 cut(s)	503
NdeII	GATC	7 cut(s)	383, 427, 481, 514, 545, 688, 878
NlaIII	CATG	7 cut(s)	511, 530, 574, 760, 799, 836, 888
NlaIV	GGNNCC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	578
PfeI	GAWTC	2 cut(s)	442, 602
PleI	GAGTC	3 cut(s)	13, 563, 837
PpsI	GAGTC	3 cut(s)	13, 563, 837
Psp124BI	GAGCTC	1 cut(s)	739
Psp6I	CCWGG	1 cut(s)	586
PspGI	CCWGG	1 cut(s)	586
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	324
PsuI	RGATCY	5 cut(s)	383, 427, 481, 545, 878
RsaI	GTAC	1 cut(s)	620
RsaNI	GTAC	1 cut(s)	619
RseI	CAYNNNNRTG	1 cut(s)	525
SacI	GAGCTC	1 cut(s)	739
Sau3AI	GATC	7 cut(s)	383, 427, 481, 514, 545, 688, 878
Sau96I	GGNCC	1 cut(s)	324
SchI	GAGTC	3 cut(s)	13, 564, 838
ScrFI	CCNGG	2 cut(s)	503, 588
SduI	GDGCHC	1 cut(s)	739
SfaNI	GCATC	2 cut(s)	152, 224
SfcI	CTRYAG	1 cut(s)	274
SinI	GGWCC	1 cut(s)	324
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	4 cut(s)	367, 451, 533, 738
SmoI	CTYRAG	4 cut(s)	367, 451, 533, 738
Sse9I	AATT	1 cut(s)	223
SsiI	CCGC	2 cut(s)	92, 141
SspMI	CTAG	2 cut(s)	72, 195
SstI	GAGCTC	1 cut(s)	739
StyD4I	CCNGG	2 cut(s)	501, 586
TaaI	ACNGT	2 cut(s)	278, 725
TaiI	ACGT	3 cut(s)	48, 351, 581
TaqI	TCGA	1 cut(s)	313
TaqII	GACCGA	1 cut(s)	341
TasI	AATT	1 cut(s)	223
TatI	WGTACW	1 cut(s)	618
TfiI	GAWTC	2 cut(s)	442, 602
TspDTI	ATGAA	6 cut(s)	100, 587, 666, 773, 812, 873
VpaK11BI	GGWCC	1 cut(s)	324
XmnI	GAANNNNTTC	1 cut(s)	578
XspI	CTAG	2 cut(s)	72, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.