Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002079

Physical Location & Seq

Genomic Coordinates Reverse (-)

16230439 .. 16232613

Gene Structure 2175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00296170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTTCAAGGAAATTGGATTGGAGAACACAATGGAAGAGAATATGGCGTCTGATGCAAGGTTAGCCTCAGAGAAAAGGGCAAGGCCTCAAGAGCAATTGAATTGTCCAAGGTGCAATTCAACCAACACCAAGTTTTGTTACTACAACAACTATAGCCTTACTCAACCAAGATACTTCTGCAAAACATGCAGAAGGTATTGGACTGAAGGTGGAACTCTCAGAAATGTTCCTGTTGGAGGAGGTTCAAGAAAGAACAAGAAATCAACATCATCAACAGCTTCATCGTCAGCGATTTCTTCATCAAAGAATATCATTCCTGATCTTAACCCACCAAATTTGTCTCACTTTTCATCTCAAAACCCTAGGATGACCCATGAAGGCCAAGATCTTAATCTGGCCTTTTCTGCTAATGTGGAGCACTACAATGGTACTAGTACTGCTCATTATGTTGATCATCACCAGGTGCCCAAAATGGAAAGCAACAACTCATCGGCTTTAGAGCTGCTTAGGGGTACTGGCATTGCTTCTAGAGGTGTGAATTCATATATACCAAACTCAATCCAGGATTCGAATGCAGTGCTTTATTCATCGTCCGGGTTCTCTTTGCAAGAATTCAAACCAAATCAGCTTGGTTTTTGTGTTGATGGGATTGGAAGTAGGTATGGTGATCATCCTCAAGAGAATGGTGGTAGTGGAAGACTCTTGTTTCCATTTGGGGATTTGAAGCAAATCTCAAGCACTACTACAGGTCATCATGAACTTGATCAGAATAAGGGGCAAGGTAATCCATCTGGGTATTGGAATGGGTTAATGGGTGGAGGGTCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009415 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010029 GO:0010030 GO:0010035 GO:0010114 GO:0010161 GO:0010371 GO:0010372 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0042221 GO:0043455 GO:0045828 GO:0045834 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0090351 GO:0104004 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

276

Amino Acids

30.32

Weight (kDa)

8.48

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	31 - 87	6.2e-34	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46590 AT2G46590 AT3G61850 AT3G61850 AT3G61850 AT3G61850 AT3G61850
fragaria_vesca	FvH4_7g17000 FvH4_7g17000 FvH4_7g17000 FvH4_7g32170 FvH4_7g32170 FvH4_7g32170
malus_domestica	MD01G1084700.v1.1 MD01G1224500.v1.1 MD07G1153300.v1.1 MD07G1295200.v1.1
prunus_persica	Prupe.2G192300_v2.0.a1 Prupe.2G192300_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1
pyrus_communis	pycom01g23320 pycom07g26780
rosa_chinensis	RchiOBHm_Chr1g0360381 RchiOBHm_Chr1g0381791
rosa_laevigata	RLG00000026205 RLG00000027812
rosa_multiflora	Rmu_sc0008418.1_g000008 Rmu_ssc0000368.1_g000076
rosa_roxburghii	Rroxscaffold_4G00278450 Rroxscaffold_4G00296170
rosa_rugosa	Rorug01G0276400 Rorug01G0276500 Rorug01G0431000
rosa_samantha	Rh1AG290500 Rh1AG454400 Rh1BG255600 Rh1CG273300 Rh1CG426000 Rh1DG285400 Rh1DG443700
rosa_wichuraiana	Rw1G025720 Rw1G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	463
AcsI	RAATTY	3 cut(s)	334, 538, 611
AcuI	CTGAAG	1 cut(s)	225
AcyI	GRCGYC	1 cut(s)	47
AdeI	CACNNNGTG	1 cut(s)	463
AfaI	GTAC	3 cut(s)	430, 436, 514
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgsI	TTSAA	6 cut(s)	7, 100, 120, 246, 616, 724
AhlI	ACTAGT	1 cut(s)	431
AjnI	CCWGG	2 cut(s)	459, 561
AjuI	GAANNNNNNNTTGG	2 cut(s)	100, 132
AluBI	AGCT	3 cut(s)	278, 502, 628
AluI	AGCT	3 cut(s)	278, 502, 628
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	1 cut(s)	345
AoxI	GGCC	3 cut(s)	83, 379, 396
ApeKI	GCWGC	1 cut(s)	502
ApoI	RAATTY	3 cut(s)	334, 538, 611
AspA2I	CCTAGG	1 cut(s)	362
AsuC2I	CCSGG	1 cut(s)	595
AsuHPI	GGTGA	2 cut(s)	449, 677
AsuII	TTCGAA	1 cut(s)	569
AvrII	CCTAGG	1 cut(s)	362
BaeGI	GKGCMC	1 cut(s)	468
BanI	GGYRCC	1 cut(s)	463
BbsI	GAAGAC	1 cut(s)	703
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	489
BccI	CCATC	2 cut(s)	638, 796
BcgI	CGANNNNNNTGC	2 cut(s)	559, 593
BciT130I	CCWGG	2 cut(s)	461, 563
BclI	TGATCA	3 cut(s)	451, 667, 763
BcnI	CCSGG	1 cut(s)	595
BcoDI	GTCTC	1 cut(s)	345
BcuI	ACTAGT	1 cut(s)	431
BfaI	CTAG	3 cut(s)	363, 432, 528
BfmI	CTRYAG	2 cut(s)	151, 744
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	1 cut(s)	503
BlnI	CCTAGG	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	504
BmcAI	AGTACT	1 cut(s)	436
Bme1390I	CCNGG	3 cut(s)	461, 563, 595
BmiI	GGNNCC	1 cut(s)	465
BmrFI	CCNGG	3 cut(s)	461, 563, 595
BmsI	GCATC	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	703
Bpu10I	CCTNAGC	1 cut(s)	506
Bpu14I	TTCGAA	1 cut(s)	569
BpuEI	CTTGAG	3 cut(s)	72, 660, 718
BpuMI	CCSGG	1 cut(s)	595
BsaBI	GATNNNNATC	1 cut(s)	390
BsaHI	GRCGYC	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	107, 362
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	520
Bse3DI	GCAATG	1 cut(s)	519
Bse8I	GATNNNNATC	1 cut(s)	390
BseBI	CCWGG	2 cut(s)	461, 563
BseDI	CCNNGG	2 cut(s)	107, 362
BseGI	GGATG	2 cut(s)	372, 670
BseJI	GATNNNNATC	1 cut(s)	390
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	2 cut(s)	81, 232
BseNI	ACTGG	1 cut(s)	520
BseRI	GAGGAG	1 cut(s)	252
BseSI	GKGCMC	1 cut(s)	468
BseXI	GCAGC	1 cut(s)	489
BshFI	GGCC	3 cut(s)	85, 381, 398
BshNI	GGYRCC	1 cut(s)	463
BsiHKAI	GWGCWC	1 cut(s)	420
BsiSI	CCGG	1 cut(s)	594
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	345
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	3 cut(s)	85, 381, 398
Bsp119I	TTCGAA	1 cut(s)	569
Bsp1286I	GDGCHC	2 cut(s)	420, 468
Bsp143I	GATC	5 cut(s)	319, 385, 451, 667, 763
BspANI	GGCC	3 cut(s)	85, 381, 398
BspCNI	CTCAG	2 cut(s)	80, 231
BspHI	TCATGA	1 cut(s)	754
BspLI	GGNNCC	1 cut(s)	465
BspT104I	TTCGAA	1 cut(s)	569
BspT107I	GGYRCC	1 cut(s)	463
BsrDI	GCAATG	1 cut(s)	519
BsrI	ACTGG	1 cut(s)	520
BssECI	CCNNGG	2 cut(s)	107, 362
BssMI	GATC	5 cut(s)	319, 385, 451, 667, 763
BssNI	GRCGYC	1 cut(s)	47
BssT1I	CCWWGG	2 cut(s)	107, 362
Bst2UI	CCWGG	2 cut(s)	461, 563
Bst6I	CTCTTC	1 cut(s)	30
BstACI	GRCGYC	1 cut(s)	47
BstAPI	GCANNNNNTGC	1 cut(s)	186
BstBI	TTCGAA	1 cut(s)	569
BstDEI	CTNAG	3 cut(s)	67, 218, 506
BstENI	CCTNNNNNAGG	1 cut(s)	234
BstF5I	GGATG	2 cut(s)	372, 670
BstKTI	GATC	5 cut(s)	322, 388, 454, 670, 766
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	5 cut(s)	319, 385, 451, 667, 763
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 62, 91, 186, 404
BstNI	CCWGG	2 cut(s)	461, 563
BstNSI	RCATGY	1 cut(s)	189
BstSCI	CCNGG	3 cut(s)	459, 561, 593
BstSFI	CTRYAG	2 cut(s)	151, 744
BstSLI	GKGCMC	1 cut(s)	468
BstV1I	GCAGC	1 cut(s)	489
BstV2I	GAAGAC	1 cut(s)	703
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	3 cut(s)	85, 381, 398
BtsCI	GGATG	2 cut(s)	372, 670
BtsI	GCAGTG	1 cut(s)	582
BtsIMutI	CAGTG	1 cut(s)	582
CciI	TCATGA	1 cut(s)	754
CseI	GACGC	1 cut(s)	36
CsiI	ACCWGGT	1 cut(s)	459
Csp6I	GTAC	3 cut(s)	429, 435, 513
CspCI	CAANNNNNGTGG	2 cut(s)	318, 353
CviAII	CATG	4 cut(s)	186, 374, 755, 825
CviJI	RGCY	9 cut(s)	65, 85, 156, 278, 381, 398, 494, 502, 628
CviKI_1	RGCY	9 cut(s)	65, 85, 156, 278, 381, 398, 494, 502, 628
CviQI	GTAC	3 cut(s)	429, 435, 513
DdeI	CTNAG	3 cut(s)	67, 218, 506
DpnI	GATC	5 cut(s)	321, 387, 453, 669, 765
DpnII	GATC	5 cut(s)	319, 385, 451, 667, 763
DraIII	CACNNNGTG	1 cut(s)	463
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	2 cut(s)	107, 362
Eco147I	AGGCCT	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	225
EcoNI	CCTNNNNNAGG	1 cut(s)	234
EcoRI	GAATTC	2 cut(s)	538, 611
EcoRII	CCWGG	2 cut(s)	459, 561
EcoT14I	CCWWGG	2 cut(s)	107, 362
ErhI	CCWWGG	2 cut(s)	107, 362
FaeI	CATG	4 cut(s)	189, 377, 758, 828
FatI	CATG	4 cut(s)	185, 373, 754, 824
FbaI	TGATCA	3 cut(s)	451, 667, 763
Fnu4HI	GCNGC	1 cut(s)	503
FokI	GGATG	2 cut(s)	379, 657
Fsp4HI	GCNGC	1 cut(s)	503
FspBI	CTAG	3 cut(s)	363, 432, 528
GluI	GCNGC	1 cut(s)	503
HaeIII	GGCC	3 cut(s)	85, 381, 398
HapII	CCGG	1 cut(s)	594
HgaI	GACGC	1 cut(s)	36
Hin1I	GRCGYC	1 cut(s)	47
Hin1II	CATG	4 cut(s)	189, 377, 758, 828
HinfI	GANTC	2 cut(s)	566, 699
HpaII	CCGG	1 cut(s)	594
HphI	GGTGA	2 cut(s)	449, 677
Hpy188I	TCNGA	4 cut(s)	52, 70, 221, 768
Hpy188III	TCNNGA	6 cut(s)	89, 246, 317, 528, 677, 755
HpyAV	CCTTC	3 cut(s)	186, 200, 371
HpyCH4V	TGCA	6 cut(s)	56, 114, 180, 189, 575, 607
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 62, 91, 186, 404
HpyF3I	CTNAG	3 cut(s)	67, 218, 506
Hsp92I	GRCGYC	1 cut(s)	47
Hsp92II	CATG	4 cut(s)	189, 377, 758, 828
Ksp22I	TGATCA	3 cut(s)	451, 667, 763
Kzo9I	GATC	5 cut(s)	319, 385, 451, 667, 763
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	1 cut(s)	489
LweI	GCATC	1 cut(s)	43
MabI	ACCWGGT	1 cut(s)	459
MaeI	CTAG	3 cut(s)	363, 432, 528
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	5 cut(s)	321, 387, 453, 669, 765
MboI	GATC	5 cut(s)	319, 385, 451, 667, 763
MboII	GAAGA	3 cut(s)	47, 288, 708
MfeI	CAATTG	1 cut(s)	95
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	2 cut(s)	420, 468
MluCI	AATT	7 cut(s)	12, 95, 100, 115, 334, 538, 611
MlyI	GAGTC	1 cut(s)	693
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	7 cut(s)	76, 96, 230, 233, 524, 684, 812
MseI	TTAA	3 cut(s)	324, 390, 809
MslI	CAYNNNNRTG	1 cut(s)	423
MspI	CCGG	1 cut(s)	594
MspR9I	CCNGG	3 cut(s)	461, 563, 595
MunI	CAATTG	1 cut(s)	95
Mva1269I	GAATGC	1 cut(s)	577
MvaI	CCWGG	2 cut(s)	461, 563
MwoI	GCNNNNNNNGC	5 cut(s)	53, 62, 91, 186, 404
NciI	CCSGG	1 cut(s)	595
NdeII	GATC	5 cut(s)	319, 385, 451, 667, 763
NlaIII	CATG	4 cut(s)	189, 377, 758, 828
NlaIV	GGNNCC	1 cut(s)	465
NspI	RCATGY	1 cut(s)	189
NspV	TTCGAA	1 cut(s)	569
PagI	TCATGA	1 cut(s)	754
PceI	AGGCCT	1 cut(s)	85
PctI	GAATGC	1 cut(s)	577
PfeI	GAWTC	1 cut(s)	566
PfoI	TCCNGGA	1 cut(s)	561
PkrI	GCNGC	1 cut(s)	504
PleI	GAGTC	1 cut(s)	693
PpsI	GAGTC	1 cut(s)	693
Psp6I	CCWGG	2 cut(s)	459, 561
PspGI	CCWGG	2 cut(s)	459, 561
PspN4I	GGNNCC	1 cut(s)	465
PsuI	RGATCY	1 cut(s)	385
RsaI	GTAC	3 cut(s)	430, 436, 514
RsaNI	GTAC	3 cut(s)	429, 435, 513
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	3 cut(s)	324, 390, 809
SatI	GCNGC	1 cut(s)	503
Sau3AI	GATC	5 cut(s)	319, 385, 451, 667, 763
ScaI	AGTACT	1 cut(s)	436
SchI	GAGTC	1 cut(s)	693
ScrFI	CCNGG	3 cut(s)	461, 563, 595
SduI	GDGCHC	2 cut(s)	420, 468
SexAI	ACCWGGT	1 cut(s)	459
SfaNI	GCATC	1 cut(s)	43
SfcI	CTRYAG	2 cut(s)	151, 744
SfuI	TTCGAA	1 cut(s)	569
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	3 cut(s)	87, 675, 733
SmoI	CTYRAG	3 cut(s)	87, 675, 733
SpeI	ACTAGT	1 cut(s)	431
Sse9I	AATT	7 cut(s)	12, 95, 100, 115, 334, 538, 611
SseBI	AGGCCT	1 cut(s)	85
SspMI	CTAG	3 cut(s)	363, 432, 528
StuI	AGGCCT	1 cut(s)	85
StyD4I	CCNGG	3 cut(s)	459, 561, 593
StyI	CCWWGG	2 cut(s)	107, 362
TaqI	TCGA	1 cut(s)	569
TasI	AATT	7 cut(s)	12, 95, 100, 115, 334, 538, 611
TatI	WGTACW	1 cut(s)	434
TfiI	GAWTC	1 cut(s)	566
Tru1I	TTAA	3 cut(s)	324, 390, 809
Tru9I	TTAA	3 cut(s)	324, 390, 809
TscAI	CASTG	1 cut(s)	582
TseI	GCWGC	1 cut(s)	502
TspDTI	ATGAA	7 cut(s)	270, 288, 339, 390, 531, 576, 771
TspRI	CASTG	1 cut(s)	582
XagI	CCTNNNNNAGG	1 cut(s)	234
XapI	RAATTY	3 cut(s)	334, 538, 611
XbaI	TCTAGA	1 cut(s)	527
XceI	RCATGY	1 cut(s)	189
XcmI	CCANNNNNNNNNTGG	1 cut(s)	795
XmaJI	CCTAGG	1 cut(s)	362
XspI	CTAG	3 cut(s)	363, 432, 528
ZrmI	AGTACT	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.