Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002079

Physical Location & Seq

Genomic Coordinates Forward (+)

52053319 .. 52055979

Gene Structure 2661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG290500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGAAGAGAATATGGGGTCTGAGGCAAGGTTAGCCTCAGAGAAAAGGGCAAGGCCTCAAGAGCAATTGAATTGTCCAAGGTGCAATTCAACCAACACCAAGTTTTGTTACTACAACAACTATAGCCTCACTCAACCAAGATACTTCTGCAAAACATGCAGAAGGTATTGGACTGAAGGTGGAACTCTCAGAAATGTTCCTGTTGGAGGAGGTTCAAGAAAGAACAAGAAGTCAACATCATCAACAGCTTCATCGTCAGCGATTTCTTCATCAAAGAATATCATTCCTGATCTTAACCCACCAAATTTGTCTCACTTTTCATCTCAAAACCCTAGGATGACCCATGAAGGCCAAGATCTTAATCTGGCCTTTTCTGCTAATGTGGAGCACTACAATGGTACTAGTACTGCTCATTATGTTGATCATCACCAGGTGCCCAAAATGGAAAGCAACAACTCATCGGCTTTAGAGCTGCTTAGGGGTACTGGCATTGCTTCTAGAGGTGTGAATTCATATATACCAAACTCAATCCAGGATTCGAATGCAGTGCTTTATTCATCGTCCGGGTTCTCTTTGCAAGAATTCAAACCAAGTCAGCTTGGTTTTTGTGTTGATGGGGTTGGAAGTAGGTATGGTGATCATCCTCAAGAGAATGGTGGTAGTGGAAGGCTCTTGTTTCCATTTGGGGATTTGAAGCAAATCTCAAGCACTACTACAGGTCATCATGAACTTGACCAGAATAAGGGGCAAGGTAATCCATCTGGGTATTGGAATGGGTTAATGGGTGGAGGGTCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009415 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010029 GO:0010030 GO:0010035 GO:0010114 GO:0010161 GO:0010371 GO:0010372 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0042221 GO:0043455 GO:0045828 GO:0045834 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0090351 GO:0104004 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

266

Amino Acids

29.12

Weight (kDa)

8.7

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	21 - 77	5.8e-34	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46590 AT2G46590 AT3G61850 AT3G61850 AT3G61850 AT3G61850 AT3G61850
fragaria_vesca	FvH4_7g17000 FvH4_7g17000 FvH4_7g17000 FvH4_7g32170 FvH4_7g32170 FvH4_7g32170
malus_domestica	MD01G1084700.v1.1 MD01G1224500.v1.1 MD07G1153300.v1.1 MD07G1295200.v1.1
prunus_persica	Prupe.2G192300_v2.0.a1 Prupe.2G192300_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1
pyrus_communis	pycom01g23320 pycom07g26780
rosa_chinensis	RchiOBHm_Chr1g0360381 RchiOBHm_Chr1g0381791
rosa_laevigata	RLG00000026205 RLG00000027812
rosa_multiflora	Rmu_sc0008418.1_g000008 Rmu_ssc0000368.1_g000076
rosa_roxburghii	Rroxscaffold_4G00278450 Rroxscaffold_4G00296170
rosa_rugosa	Rorug01G0276400 Rorug01G0276500 Rorug01G0431000
rosa_samantha	Rh1AG290500 Rh1AG454400 Rh1BG255600 Rh1CG273300 Rh1CG426000 Rh1DG285400 Rh1DG443700
rosa_wichuraiana	Rw1G025720 Rw1G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	433
AcsI	RAATTY	3 cut(s)	304, 508, 581
AcuI	CTGAAG	1 cut(s)	195
AdeI	CACNNNGTG	1 cut(s)	433
AfaI	GTAC	3 cut(s)	400, 406, 484
AfiI	CCNNNNNNNGG	2 cut(s)	206, 742
AgsI	TTSAA	5 cut(s)	70, 90, 216, 586, 694
AhlI	ACTAGT	1 cut(s)	401
AjnI	CCWGG	2 cut(s)	429, 531
AjuI	GAANNNNNNNTTGG	2 cut(s)	70, 102
AluBI	AGCT	3 cut(s)	248, 472, 598
AluI	AGCT	3 cut(s)	248, 472, 598
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	1 cut(s)	315
AoxI	GGCC	3 cut(s)	53, 349, 366
ApeKI	GCWGC	1 cut(s)	472
ApoI	RAATTY	3 cut(s)	304, 508, 581
AspA2I	CCTAGG	1 cut(s)	332
AsuC2I	CCSGG	1 cut(s)	565
AsuHPI	GGTGA	2 cut(s)	419, 647
AsuII	TTCGAA	1 cut(s)	539
AvrII	CCTAGG	1 cut(s)	332
BaeGI	GKGCMC	1 cut(s)	438
BanI	GGYRCC	1 cut(s)	433
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	1 cut(s)	459
BccI	CCATC	2 cut(s)	608, 766
BcgI	CGANNNNNNTGC	2 cut(s)	529, 563
BciT130I	CCWGG	2 cut(s)	431, 533
BclI	TGATCA	2 cut(s)	421, 637
BcnI	CCSGG	1 cut(s)	565
BcoDI	GTCTC	1 cut(s)	315
BcuI	ACTAGT	1 cut(s)	401
BfaI	CTAG	3 cut(s)	333, 402, 498
BfmI	CTRYAG	2 cut(s)	121, 714
BglII	AGATCT	1 cut(s)	355
BisI	GCNGC	1 cut(s)	473
BlnI	CCTAGG	1 cut(s)	332
BlsI	GCNGC	1 cut(s)	474
BmcAI	AGTACT	1 cut(s)	406
Bme1390I	CCNGG	3 cut(s)	431, 533, 565
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	3 cut(s)	431, 533, 565
Bpu10I	CCTNAGC	1 cut(s)	476
Bpu14I	TTCGAA	1 cut(s)	539
BpuEI	CTTGAG	3 cut(s)	42, 630, 688
BpuMI	CCSGG	1 cut(s)	565
BsaBI	GATNNNNATC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	77, 332
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 742
Bse1I	ACTGG	1 cut(s)	490
Bse3DI	GCAATG	1 cut(s)	489
Bse8I	GATNNNNATC	1 cut(s)	360
BseBI	CCWGG	2 cut(s)	431, 533
BseDI	CCNNGG	2 cut(s)	77, 332
BseGI	GGATG	2 cut(s)	342, 640
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	2 cut(s)	206, 742
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	3 cut(s)	12, 51, 202
BseNI	ACTGG	1 cut(s)	490
BseRI	GAGGAG	1 cut(s)	222
BseSI	GKGCMC	1 cut(s)	438
BseXI	GCAGC	1 cut(s)	459
BshFI	GGCC	3 cut(s)	55, 351, 368
BshNI	GGYRCC	1 cut(s)	433
BsiHKAI	GWGCWC	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	564
BslI	CCNNNNNNNGG	2 cut(s)	206, 742
BsmAI	GTCTC	1 cut(s)	315
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	3 cut(s)	55, 351, 368
Bsp119I	TTCGAA	1 cut(s)	539
Bsp1286I	GDGCHC	2 cut(s)	390, 438
Bsp143I	GATC	4 cut(s)	289, 355, 421, 637
BspANI	GGCC	3 cut(s)	55, 351, 368
BspCNI	CTCAG	3 cut(s)	13, 50, 201
BspHI	TCATGA	1 cut(s)	724
BspLI	GGNNCC	1 cut(s)	435
BspT104I	TTCGAA	1 cut(s)	539
BspT107I	GGYRCC	1 cut(s)	433
BsrDI	GCAATG	1 cut(s)	489
BsrI	ACTGG	1 cut(s)	490
BssECI	CCNNGG	2 cut(s)	77, 332
BssMI	GATC	4 cut(s)	289, 355, 421, 637
BssT1I	CCWWGG	2 cut(s)	77, 332
Bst2UI	CCWGG	2 cut(s)	431, 533
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstBI	TTCGAA	1 cut(s)	539
BstDEI	CTNAG	4 cut(s)	21, 37, 188, 476
BstENI	CCTNNNNNAGG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	342, 640
BstKTI	GATC	4 cut(s)	292, 358, 424, 640
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	4 cut(s)	289, 355, 421, 637
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 61, 156, 374
BstNI	CCWGG	2 cut(s)	431, 533
BstNSI	RCATGY	1 cut(s)	159
BstSCI	CCNGG	3 cut(s)	429, 531, 563
BstSFI	CTRYAG	2 cut(s)	121, 714
BstSLI	GKGCMC	1 cut(s)	438
BstV1I	GCAGC	1 cut(s)	459
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BsuRI	GGCC	3 cut(s)	55, 351, 368
BtsCI	GGATG	2 cut(s)	342, 640
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	1 cut(s)	552
CciI	TCATGA	1 cut(s)	724
CsiI	ACCWGGT	1 cut(s)	429
Csp6I	GTAC	3 cut(s)	399, 405, 483
CspCI	CAANNNNNGTGG	2 cut(s)	288, 323
CviAII	CATG	4 cut(s)	156, 344, 725, 795
CviQI	GTAC	3 cut(s)	399, 405, 483
DdeI	CTNAG	4 cut(s)	21, 37, 188, 476
DpnI	GATC	4 cut(s)	291, 357, 423, 639
DpnII	GATC	4 cut(s)	289, 355, 421, 637
DraIII	CACNNNGTG	1 cut(s)	433
Eco130I	CCWWGG	2 cut(s)	77, 332
Eco147I	AGGCCT	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	195
EcoNI	CCTNNNNNAGG	1 cut(s)	204
EcoRI	GAATTC	2 cut(s)	508, 581
EcoRII	CCWGG	2 cut(s)	429, 531
EcoT14I	CCWWGG	2 cut(s)	77, 332
ErhI	CCWWGG	2 cut(s)	77, 332
FaeI	CATG	4 cut(s)	159, 347, 728, 798
FatI	CATG	4 cut(s)	155, 343, 724, 794
FbaI	TGATCA	2 cut(s)	421, 637
Fnu4HI	GCNGC	1 cut(s)	473
FokI	GGATG	2 cut(s)	349, 627
Fsp4HI	GCNGC	1 cut(s)	473
FspBI	CTAG	3 cut(s)	333, 402, 498
GluI	GCNGC	1 cut(s)	473
HaeIII	GGCC	3 cut(s)	55, 351, 368
HapII	CCGG	1 cut(s)	564
Hin1II	CATG	4 cut(s)	159, 347, 728, 798
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HinfI	GANTC	1 cut(s)	536
HpaII	CCGG	1 cut(s)	564
HphI	GGTGA	2 cut(s)	419, 647
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188I	TCNGA	3 cut(s)	22, 40, 191
Hpy188III	TCNNGA	6 cut(s)	59, 216, 287, 498, 647, 725
Hpy8I	GTNNAC	1 cut(s)	234
HpyAV	CCTTC	4 cut(s)	156, 170, 341, 660
HpyCH4V	TGCA	5 cut(s)	84, 150, 159, 545, 577
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 61, 156, 374
HpyF3I	CTNAG	4 cut(s)	21, 37, 188, 476
Hsp92II	CATG	4 cut(s)	159, 347, 728, 798
Ksp22I	TGATCA	2 cut(s)	421, 637
Kzo9I	GATC	4 cut(s)	289, 355, 421, 637
LmnI	GCTCC	1 cut(s)	385
Lsp1109I	GCAGC	1 cut(s)	459
MabI	ACCWGGT	1 cut(s)	429
MaeI	CTAG	3 cut(s)	333, 402, 498
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	4 cut(s)	291, 357, 423, 639
MboI	GATC	4 cut(s)	289, 355, 421, 637
MboII	GAAGA	2 cut(s)	17, 258
MfeI	CAATTG	1 cut(s)	65
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	2 cut(s)	390, 438
MluCI	AATT	6 cut(s)	65, 70, 85, 304, 508, 581
MmeI	TCCRAC	2 cut(s)	184, 601
MnlI	CCTC	9 cut(s)	16, 46, 66, 137, 200, 203, 494, 654, 782
MseI	TTAA	3 cut(s)	294, 360, 779
MslI	CAYNNNNRTG	1 cut(s)	393
MspI	CCGG	1 cut(s)	564
MspR9I	CCNGG	3 cut(s)	431, 533, 565
MunI	CAATTG	1 cut(s)	65
Mva1269I	GAATGC	1 cut(s)	547
MvaI	CCWGG	2 cut(s)	431, 533
MwoI	GCNNNNNNNGC	4 cut(s)	32, 61, 156, 374
NciI	CCSGG	1 cut(s)	565
NdeII	GATC	4 cut(s)	289, 355, 421, 637
NlaIII	CATG	4 cut(s)	159, 347, 728, 798
NlaIV	GGNNCC	1 cut(s)	435
NspI	RCATGY	1 cut(s)	159
NspV	TTCGAA	1 cut(s)	539
PagI	TCATGA	1 cut(s)	724
PceI	AGGCCT	1 cut(s)	55
PctI	GAATGC	1 cut(s)	547
PfeI	GAWTC	1 cut(s)	536
PfoI	TCCNGGA	1 cut(s)	531
PkrI	GCNGC	1 cut(s)	474
Psp6I	CCWGG	2 cut(s)	429, 531
PspGI	CCWGG	2 cut(s)	429, 531
PspN4I	GGNNCC	1 cut(s)	435
PsuI	RGATCY	1 cut(s)	355
RsaI	GTAC	3 cut(s)	400, 406, 484
RsaNI	GTAC	3 cut(s)	399, 405, 483
RseI	CAYNNNNRTG	1 cut(s)	393
SaqAI	TTAA	3 cut(s)	294, 360, 779
SatI	GCNGC	1 cut(s)	473
Sau3AI	GATC	4 cut(s)	289, 355, 421, 637
ScaI	AGTACT	1 cut(s)	406
ScrFI	CCNGG	3 cut(s)	431, 533, 565
SduI	GDGCHC	2 cut(s)	390, 438
SexAI	ACCWGGT	1 cut(s)	429
SfcI	CTRYAG	2 cut(s)	121, 714
SfuI	TTCGAA	1 cut(s)	539
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	3 cut(s)	57, 645, 703
SmoI	CTYRAG	3 cut(s)	57, 645, 703
SpeI	ACTAGT	1 cut(s)	401
Sse9I	AATT	6 cut(s)	65, 70, 85, 304, 508, 581
SseBI	AGGCCT	1 cut(s)	55
SspMI	CTAG	3 cut(s)	333, 402, 498
StuI	AGGCCT	1 cut(s)	55
StyD4I	CCNGG	3 cut(s)	429, 531, 563
StyI	CCWWGG	2 cut(s)	77, 332
TaqI	TCGA	1 cut(s)	539
TasI	AATT	6 cut(s)	65, 70, 85, 304, 508, 581
TatI	WGTACW	1 cut(s)	404
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	3 cut(s)	294, 360, 779
Tru9I	TTAA	3 cut(s)	294, 360, 779
TscAI	CASTG	1 cut(s)	552
TseI	GCWGC	1 cut(s)	472
TspDTI	ATGAA	7 cut(s)	240, 258, 309, 360, 501, 546, 741
TspRI	CASTG	1 cut(s)	552
XagI	CCTNNNNNAGG	1 cut(s)	204
XapI	RAATTY	3 cut(s)	304, 508, 581
XbaI	TCTAGA	1 cut(s)	497
XceI	RCATGY	1 cut(s)	159
XcmI	CCANNNNNNNNNTGG	1 cut(s)	765
XmaJI	CCTAGG	1 cut(s)	332
XspI	CTAG	3 cut(s)	333, 402, 498
ZrmI	AGTACT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.