Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002079

Physical Location & Seq

Genomic Coordinates Forward (+)

14552660 .. 14554850

Gene Structure 2191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g17000.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGACACTGCTCAATGGCCTCAGGAAATTGGATTGGAGAAGACAATGGAAGAGAATATGGCGTCTGATGCAGCAAGGTTGGCCTCAGAGAAAAGGGCAAGGCCTCAAGAGCAATTGAATTGTCCAAGGTGCAACTCAACTAACACCAAGTTTTGTTACTACAACAACTATAGCCTCACTCAACCAAGATACTTCTGCAAAACATGCAGAAGGTATTGGACTGAAGGTGGAACACTCAGAAATGTTCCTGTTGGAGGAGGTTCAAGAAAGAACAAGAAGTCAACATCATCAACAGCTTCATCGTCAGCGATTTCTTCATCAAAGAATATCATTCCTGATCTTAACCCACCAAGTCTGTCTCACTTTTCATCTCAAAACCCTAGGATGACCCATGAAGGCCAAGATCTTAATCTGGCATTTTCTGCTAATGTGGAGCACTACAGTGGTACTAGTACTGCTCATTATGTTGATCATCACCAGGTGCCCAAAATGGAAAGCAACAACTCATCGGCTTTGGAGCTGCTTAGGAGTACTGGCATTGCTTCCAGAGGAGTGAATTCTTACATACCAAACTCAATGCAGGATTCAAATGCAGTGCTTTACTCATCGTCCGGGTTCGCTTTGCAAGAATTCAAACCAAGCCAGCTTGGTTTTTGTGTTGATGGGCTTGGAAGTAGGTATAGTGATCATCCTCAGGAGAATGGTGGTAGTGGAAGGCTCTTGTTTCCATTTGGGGATTTGAAGCAGATATCAAGCACTACTACAGGCCATCATGAACTTGATCAGAACAAGGGGCAAGGTAATCCGACTGGGTATTGGAATGGGTTAATGGGTGGAGGGTCATGGGGGTATGGTAGTGAATCCGATCCACTCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009415 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010029 GO:0010030 GO:0010035 GO:0010114 GO:0010161 GO:0010371 GO:0010372 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0042221 GO:0043455 GO:0045828 GO:0045834 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0090351 GO:0104004 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

293

Amino Acids

31.99

Weight (kDa)

6.75

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	37 - 93	6.8e-34	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46590 AT2G46590 AT3G61850 AT3G61850 AT3G61850 AT3G61850 AT3G61850
fragaria_vesca	FvH4_7g17000 FvH4_7g17000 FvH4_7g17000 FvH4_7g32170 FvH4_7g32170 FvH4_7g32170
malus_domestica	MD01G1084700.v1.1 MD01G1224500.v1.1 MD07G1153300.v1.1 MD07G1295200.v1.1
prunus_persica	Prupe.2G192300_v2.0.a1 Prupe.2G192300_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1
pyrus_communis	pycom01g23320 pycom07g26780
rosa_chinensis	RchiOBHm_Chr1g0360381 RchiOBHm_Chr1g0381791
rosa_laevigata	RLG00000026205 RLG00000027812
rosa_multiflora	Rmu_sc0008418.1_g000008 Rmu_ssc0000368.1_g000076
rosa_roxburghii	Rroxscaffold_4G00278450 Rroxscaffold_4G00296170
rosa_rugosa	Rorug01G0276400 Rorug01G0276500 Rorug01G0431000
rosa_samantha	Rh1AG290500 Rh1AG454400 Rh1BG255600 Rh1CG273300 Rh1CG426000 Rh1DG285400 Rh1DG443700
rosa_wichuraiana	Rw1G025720 Rw1G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	481
AclWI	GGATC	1 cut(s)	860
AcsI	RAATTY	2 cut(s)	556, 629
AcuI	CTGAAG	1 cut(s)	243
AcyI	GRCGYC	1 cut(s)	62
AdeI	CACNNNGTG	1 cut(s)	481
AfaI	GTAC	3 cut(s)	448, 454, 532
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	5 cut(s)	118, 264, 588, 634, 742
AhlI	ACTAGT	1 cut(s)	449
AjnI	CCWGG	1 cut(s)	477
AleI	CACNNNNGTG	1 cut(s)	441
AluBI	AGCT	3 cut(s)	296, 520, 646
AluI	AGCT	3 cut(s)	296, 520, 646
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	1 cut(s)	363
AlwI	GGATC	1 cut(s)	860
AoxI	GGCC	5 cut(s)	17, 81, 101, 397, 766
ApeKI	GCWGC	2 cut(s)	71, 520
ApoI	RAATTY	2 cut(s)	556, 629
AspA2I	CCTAGG	1 cut(s)	380
AsuC2I	CCSGG	1 cut(s)	613
AsuHPI	GGTGA	1 cut(s)	467
AvrII	CCTAGG	1 cut(s)	380
AxyI	CCTNAGG	2 cut(s)	21, 693
BaeGI	GKGCMC	1 cut(s)	486
BanI	GGYRCC	1 cut(s)	481
BbsI	GAAGAC	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	438
BbvI	GCAGC	2 cut(s)	83, 507
BccI	CCATC	2 cut(s)	656, 777
BciT130I	CCWGG	1 cut(s)	479
BclI	TGATCA	3 cut(s)	469, 685, 781
BcnI	CCSGG	1 cut(s)	613
BcoDI	GTCTC	1 cut(s)	363
BcuI	ACTAGT	1 cut(s)	449
BfaI	CTAG	2 cut(s)	381, 450
BfmI	CTRYAG	3 cut(s)	169, 439, 762
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	2 cut(s)	72, 521
BlnI	CCTAGG	1 cut(s)	380
BlsI	GCNGC	2 cut(s)	73, 522
BmcAI	AGTACT	2 cut(s)	454, 532
Bme1390I	CCNGG	2 cut(s)	479, 613
BmiI	GGNNCC	1 cut(s)	483
BmrFI	CCNGG	2 cut(s)	479, 613
BmrI	ACTGGG	1 cut(s)	819
BmsI	GCATC	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	819
BpiI	GAAGAC	1 cut(s)	47
Bpu10I	CCTNAGC	1 cut(s)	524
BpuEI	CTTGAG	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	613
BsaBI	GATNNNNATC	1 cut(s)	408
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	2 cut(s)	125, 380
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	2 cut(s)	538, 814
Bse21I	CCTNAGG	2 cut(s)	21, 693
Bse3DI	GCAATG	1 cut(s)	537
Bse8I	GATNNNNATC	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	2 cut(s)	125, 380
BseGI	GGATG	2 cut(s)	390, 688
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMI	GCAATG	1 cut(s)	537
BseMII	CTCAG	4 cut(s)	35, 99, 250, 707
BseNI	ACTGG	2 cut(s)	538, 814
BseRI	GAGGAG	2 cut(s)	270, 564
BseSI	GKGCMC	1 cut(s)	486
BseXI	GCAGC	2 cut(s)	83, 507
BshFI	GGCC	5 cut(s)	19, 83, 103, 399, 768
BshNI	GGYRCC	1 cut(s)	481
BsiHKAI	GWGCWC	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	612
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	1 cut(s)	363
BsnI	GGCC	5 cut(s)	19, 83, 103, 399, 768
Bsp1286I	GDGCHC	2 cut(s)	438, 486
Bsp143I	GATC	6 cut(s)	337, 403, 469, 685, 781, 865
BspANI	GGCC	5 cut(s)	19, 83, 103, 399, 768
BspCNI	CTCAG	4 cut(s)	34, 98, 249, 706
BspHI	TCATGA	1 cut(s)	772
BspLI	GGNNCC	1 cut(s)	483
BspPI	GGATC	1 cut(s)	860
BspT107I	GGYRCC	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	537
BsrI	ACTGG	2 cut(s)	538, 814
BssECI	CCNNGG	2 cut(s)	125, 380
BssMI	GATC	6 cut(s)	337, 403, 469, 685, 781, 865
BssNI	GRCGYC	1 cut(s)	62
BssT1I	CCWWGG	2 cut(s)	125, 380
Bst2UI	CCWGG	1 cut(s)	479
Bst4CI	ACNGT	1 cut(s)	443
Bst6I	CTCTTC	1 cut(s)	45
BstACI	GRCGYC	1 cut(s)	62
BstAPI	GCANNNNNTGC	2 cut(s)	204, 422
BstC8I	GCNNGC	1 cut(s)	644
BstDEI	CTNAG	5 cut(s)	21, 85, 236, 524, 693
BstENI	CCTNNNNNAGG	1 cut(s)	252
BstF5I	GGATG	2 cut(s)	390, 688
BstKTI	GATC	6 cut(s)	340, 406, 472, 688, 784, 868
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	6 cut(s)	337, 403, 469, 685, 781, 865
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 80, 109, 204, 422
BstNI	CCWGG	1 cut(s)	479
BstNSI	RCATGY	1 cut(s)	207
BstSCI	CCNGG	2 cut(s)	477, 611
BstSFI	CTRYAG	3 cut(s)	169, 439, 762
BstSLI	GKGCMC	1 cut(s)	486
BstV1I	GCAGC	2 cut(s)	83, 507
BstV2I	GAAGAC	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
Bsu36I	CCTNAGG	2 cut(s)	21, 693
BsuRI	GGCC	5 cut(s)	19, 83, 103, 399, 768
BtsCI	GGATG	2 cut(s)	390, 688
BtsI	GCAGTG	2 cut(s)	6, 600
BtsIMutI	CAGTG	3 cut(s)	6, 448, 600
Cac8I	GCNNGC	1 cut(s)	644
CciI	TCATGA	1 cut(s)	772
CseI	GACGC	1 cut(s)	51
CsiI	ACCWGGT	1 cut(s)	477
Csp6I	GTAC	3 cut(s)	447, 453, 531
CviAII	CATG	4 cut(s)	204, 392, 773, 843
CviQI	GTAC	3 cut(s)	447, 453, 531
DdeI	CTNAG	5 cut(s)	21, 85, 236, 524, 693
DpnI	GATC	6 cut(s)	339, 405, 471, 687, 783, 867
DpnII	GATC	6 cut(s)	337, 403, 469, 685, 781, 865
DraIII	CACNNNGTG	1 cut(s)	481
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco130I	CCWWGG	2 cut(s)	125, 380
Eco147I	AGGCCT	1 cut(s)	103
Eco32I	GATATC	1 cut(s)	750
Eco57I	CTGAAG	1 cut(s)	243
Eco81I	CCTNAGG	2 cut(s)	21, 693
EcoNI	CCTNNNNNAGG	1 cut(s)	252
EcoRI	GAATTC	2 cut(s)	556, 629
EcoRII	CCWGG	1 cut(s)	477
EcoRV	GATATC	1 cut(s)	750
EcoT14I	CCWWGG	2 cut(s)	125, 380
ErhI	CCWWGG	2 cut(s)	125, 380
FaeI	CATG	4 cut(s)	207, 395, 776, 846
FatI	CATG	4 cut(s)	203, 391, 772, 842
FbaI	TGATCA	3 cut(s)	469, 685, 781
Fnu4HI	GCNGC	2 cut(s)	72, 521
FokI	GGATG	2 cut(s)	397, 675
Fsp4HI	GCNGC	2 cut(s)	72, 521
FspBI	CTAG	2 cut(s)	381, 450
GluI	GCNGC	2 cut(s)	72, 521
HaeIII	GGCC	5 cut(s)	19, 83, 103, 399, 768
HapII	CCGG	1 cut(s)	612
HgaI	GACGC	1 cut(s)	51
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	4 cut(s)	207, 395, 776, 846
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HinfI	GANTC	2 cut(s)	584, 860
HpaII	CCGG	1 cut(s)	612
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	1 cut(s)	282
Hpy188I	TCNGA	6 cut(s)	67, 88, 239, 786, 807, 865
Hpy188III	TCNNGA	7 cut(s)	23, 107, 264, 335, 546, 695, 773
Hpy8I	GTNNAC	1 cut(s)	282
HpyAV	CCTTC	4 cut(s)	204, 218, 389, 708
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4V	TGCA	7 cut(s)	71, 132, 198, 207, 580, 593, 625
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 80, 109, 204, 422
HpyF3I	CTNAG	5 cut(s)	21, 85, 236, 524, 693
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	4 cut(s)	207, 395, 776, 846
Ksp22I	TGATCA	3 cut(s)	469, 685, 781
Kzo9I	GATC	6 cut(s)	337, 403, 469, 685, 781, 865
LmnI	GCTCC	2 cut(s)	433, 517
Lsp1109I	GCAGC	2 cut(s)	83, 507
LweI	GCATC	1 cut(s)	58
MabI	ACCWGGT	1 cut(s)	477
MaeI	CTAG	2 cut(s)	381, 450
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	6 cut(s)	339, 405, 471, 687, 783, 867
MboI	GATC	6 cut(s)	337, 403, 469, 685, 781, 865
MboII	GAAGA	3 cut(s)	52, 62, 306
MfeI	CAATTG	1 cut(s)	113
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	2 cut(s)	438, 486
MluCI	AATT	5 cut(s)	27, 113, 118, 556, 629
MmeI	TCCRAC	2 cut(s)	232, 830
MnlI	CCTC	9 cut(s)	30, 94, 114, 185, 248, 251, 542, 702, 830
MseI	TTAA	3 cut(s)	342, 408, 827
MslI	CAYNNNNRTG	2 cut(s)	441, 874
MspI	CCGG	1 cut(s)	612
MspR9I	CCNGG	2 cut(s)	479, 613
MunI	CAATTG	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	479
MwoI	GCNNNNNNNGC	5 cut(s)	68, 80, 109, 204, 422
NciI	CCSGG	1 cut(s)	613
NdeII	GATC	6 cut(s)	337, 403, 469, 685, 781, 865
NlaIII	CATG	4 cut(s)	207, 395, 776, 846
NlaIV	GGNNCC	1 cut(s)	483
NspI	RCATGY	1 cut(s)	207
OliI	CACNNNNGTG	1 cut(s)	441
PagI	TCATGA	1 cut(s)	772
PceI	AGGCCT	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	584, 860
PkrI	GCNGC	2 cut(s)	73, 522
Psp6I	CCWGG	1 cut(s)	477
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	1 cut(s)	483
PsuI	RGATCY	1 cut(s)	403
RsaI	GTAC	3 cut(s)	448, 454, 532
RsaNI	GTAC	3 cut(s)	447, 453, 531
RseI	CAYNNNNRTG	2 cut(s)	441, 874
SaqAI	TTAA	3 cut(s)	342, 408, 827
SatI	GCNGC	2 cut(s)	72, 521
Sau3AI	GATC	6 cut(s)	337, 403, 469, 685, 781, 865
ScaI	AGTACT	2 cut(s)	454, 532
ScrFI	CCNGG	2 cut(s)	479, 613
SduI	GDGCHC	2 cut(s)	438, 486
SexAI	ACCWGGT	1 cut(s)	477
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	3 cut(s)	169, 439, 762
SmiMI	CAYNNNNRTG	2 cut(s)	441, 874
SmlI	CTYRAG	1 cut(s)	105
SmoI	CTYRAG	1 cut(s)	105
SpeI	ACTAGT	1 cut(s)	449
Sse9I	AATT	5 cut(s)	27, 113, 118, 556, 629
SseBI	AGGCCT	1 cut(s)	103
SspMI	CTAG	2 cut(s)	381, 450
StuI	AGGCCT	1 cut(s)	103
StyD4I	CCNGG	2 cut(s)	477, 611
StyI	CCWWGG	2 cut(s)	125, 380
TaaI	ACNGT	1 cut(s)	443
TaqI	TCGA	1 cut(s)	873
TasI	AATT	5 cut(s)	27, 113, 118, 556, 629
TatI	WGTACW	2 cut(s)	452, 530
TfiI	GAWTC	2 cut(s)	584, 860
Tru1I	TTAA	3 cut(s)	342, 408, 827
Tru9I	TTAA	3 cut(s)	342, 408, 827
TscAI	CASTG	3 cut(s)	13, 448, 600
TseI	GCWGC	2 cut(s)	71, 520
TspDTI	ATGAA	5 cut(s)	288, 306, 357, 408, 789
TspRI	CASTG	3 cut(s)	13, 448, 600
XagI	CCTNNNNNAGG	1 cut(s)	252
XapI	RAATTY	2 cut(s)	556, 629
XceI	RCATGY	1 cut(s)	207
XmaJI	CCTAGG	1 cut(s)	380
XspI	CTAG	2 cut(s)	381, 450
ZrmI	AGTACT	2 cut(s)	454, 532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.