Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002079

Physical Location & Seq

Genomic Coordinates Reverse (-)

1227316 .. 1229482

Gene Structure 2167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026205

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGACACAGCTCACTGGCCACAGGGGATTGGAGTGGTTAAATCCATGGGAGTTGAAGTTTCTGATTCAAGGCCTATCTTAGAGAGAAGAGGAAGACCTCAGAAGGATCAAGCTTTGAATTGTCCAAGGTGCAACTCAACAACCACTAAATTCTGTTACTATAACAATTACAGTCTCTCTCAGCCAAGGTACTTCTGTAAGACTTGTAGAAGGTATTGGACTGAAGGTGGGTCTTTGAGAAATGTTCCAGTGGGTGGAGGCTCAAGGAAGAATAACAAGAGATCTTCAACTTCATCATCTTCGTCGCCATCAACTTCCAATTCATCTAAGAAGCTTGCTCATCATGGTCTGGTGATGACCCAACAAAGTGCTGATTCTCAAAACCCTAAGATCCACCAAGGTCAAGATCTCAACCTAGCATACCCACCAACATCTGATCAGGACTATGATCATCATAGCATCTTTAACCCTAGCTCTTCTAGAATTAGTACTTCATCCCCTCATAATCTCTCGGCTATGGAGCTCCTCAAGAGTACTGGGATCAATGCATCAAGGGGATTAATGAACTCTTTCATGGCTCCCATATCTGTAGCAGATTCGAATACTATCACGATGTTCTCTACTGGTAATCATGGGTTTCCAAATTTGCAAGAATTTAAGCCAAGGCTCAGTTTTTCTCTTGATGGGTATGAGAGTGGCTATGGAAGTCTTCAAGGCGTTCAAGACGGTACTGGTCATCATCATGCAAGGCTCTTGTTTCCTACTGACCAGGATTTGAAGCAGATTCCAAGCAGTACTACTAATACTACTACAAGCACTGAATTTGAGCAAAATGGAGGGGAAGGAGATCATTCTGGTGTGTATTGGAATGGAATGTTAGGTGGAGGATCATGGGGTGTGAAGGAATGCTGTACGAAGATTCACGAGTACAAGAGGAGGCCAAGCAAGTCCCATATTTCTTTTGAGGGTTCGGCAGCAAGAAAGAGTGGGCAGAAATGTCAGGTCTTTTCAGAACCATCTGGGTCGGACTTTGAGAGATTCTTCCACCCATTAAAGCTTACCCTCCTTCATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

359

Amino Acids

39.47

Weight (kDa)

9.12

Isoelectric Point (pI)

47.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	36 - 93	9.2e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46590 AT2G46590 AT3G61850 AT3G61850 AT3G61850 AT3G61850 AT3G61850
fragaria_vesca	FvH4_7g17000 FvH4_7g17000 FvH4_7g17000 FvH4_7g32170 FvH4_7g32170 FvH4_7g32170
malus_domestica	MD01G1084700.v1.1 MD01G1224500.v1.1 MD07G1153300.v1.1 MD07G1295200.v1.1
prunus_persica	Prupe.2G192300_v2.0.a1 Prupe.2G192300_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1
pyrus_communis	pycom01g23320 pycom07g26780
rosa_chinensis	RchiOBHm_Chr1g0360381 RchiOBHm_Chr1g0381791
rosa_laevigata	RLG00000026205 RLG00000027812
rosa_multiflora	Rmu_sc0008418.1_g000008 Rmu_ssc0000368.1_g000076
rosa_roxburghii	Rroxscaffold_4G00278450 Rroxscaffold_4G00296170
rosa_rugosa	Rorug01G0276400 Rorug01G0276500 Rorug01G0431000
rosa_samantha	Rh1AG290500 Rh1AG454400 Rh1BG255600 Rh1CG273300 Rh1CG426000 Rh1DG285400 Rh1DG443700
rosa_wichuraiana	Rw1G025720 Rw1G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	254
AclWI	GGATC	4 cut(s)	114, 385, 548, 895
AcoI	YGGCCR	1 cut(s)	17
AcsI	RAATTY	4 cut(s)	149, 643, 653, 821
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	7 cut(s)	191, 490, 535, 730, 796, 913, 929
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	7 cut(s)	56, 69, 118, 288, 713, 722, 778
AjnI	CCWGG	1 cut(s)	768
AluBI	AGCT	6 cut(s)	11, 113, 334, 474, 523, 1057
AluI	AGCT	6 cut(s)	11, 113, 334, 474, 523, 1057
Alw21I	GWGCWC	1 cut(s)	525
Alw26I	GTCTC	1 cut(s)	179
AlwI	GGATC	4 cut(s)	114, 385, 548, 895
AoxI	GGCC	3 cut(s)	17, 71, 938
ApeKI	GCWGC	1 cut(s)	974
ApoI	RAATTY	4 cut(s)	149, 643, 653, 821
AseI	ATTAAT	1 cut(s)	560
Asp700I	GAANNNNTTC	1 cut(s)	569
AsuHPI	GGTGA	1 cut(s)	364
AsuII	TTCGAA	1 cut(s)	599
BaeI	ACNNNNGTAYC	2 cut(s)	181, 214
BalI	TGGCCA	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	525
BauI	CACGAG	1 cut(s)	923
BbsI	GAAGAC	2 cut(s)	100, 701
Bbv12I	GWGCWC	1 cut(s)	525
BbvI	GCAGC	1 cut(s)	986
BccI	CCATC	3 cut(s)	316, 677, 1024
BciT130I	CCWGG	1 cut(s)	770
BclI	TGATCA	2 cut(s)	436, 448
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	3 cut(s)	416, 471, 480
BfmI	CTRYAG	1 cut(s)	588
BglII	AGATCT	2 cut(s)	281, 406
BisI	GCNGC	1 cut(s)	975
BlsI	GCNGC	1 cut(s)	976
BmcAI	AGTACT	3 cut(s)	490, 535, 796
Bme1390I	CCNGG	1 cut(s)	770
BmiI	GGNNCC	1 cut(s)	579
BmrFI	CCNGG	1 cut(s)	770
BmrI	ACTGGG	1 cut(s)	546
BmsI	GCATC	2 cut(s)	468, 557
BmuI	ACTGGG	1 cut(s)	546
BpiI	GAAGAC	2 cut(s)	100, 701
Bpu14I	TTCGAA	1 cut(s)	599
BpuEI	CTTGAG	2 cut(s)	247, 512
BsaJI	CCNNGG	5 cut(s)	45, 125, 185, 397, 662
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	5 cut(s)	20, 248, 541, 628, 736
BseBI	CCWGG	1 cut(s)	770
BseDI	CCNNGG	5 cut(s)	45, 125, 185, 397, 662
BseGI	GGATG	1 cut(s)	494
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	3 cut(s)	113, 194, 682
BseNI	ACTGG	5 cut(s)	20, 248, 541, 628, 736
BseRI	GAGGAG	2 cut(s)	515, 949
BseXI	GCAGC	1 cut(s)	986
BshFI	GGCC	3 cut(s)	19, 73, 940
BsiHKAI	GWGCWC	1 cut(s)	525
BslFI	GGGAC	1 cut(s)	934
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	934
BsmI	GAATGC	1 cut(s)	911
BsnI	GGCC	3 cut(s)	19, 73, 940
Bsp119I	TTCGAA	1 cut(s)	599
Bsp1286I	GDGCHC	1 cut(s)	525
Bsp143I	GATC	9 cut(s)	106, 281, 390, 406, 436, 448, 540, 847, 887
Bsp19I	CCATGG	1 cut(s)	45
BspANI	GGCC	3 cut(s)	19, 73, 940
BspCNI	CTCAG	3 cut(s)	112, 193, 681
BspLI	GGNNCC	1 cut(s)	579
BspPI	GGATC	4 cut(s)	114, 385, 548, 895
BspQI	GCTCTTC	1 cut(s)	481
BspT104I	TTCGAA	1 cut(s)	599
BsrI	ACTGG	5 cut(s)	20, 248, 541, 628, 736
BssECI	CCNNGG	5 cut(s)	45, 125, 185, 397, 662
BssMI	GATC	9 cut(s)	106, 281, 390, 406, 436, 448, 540, 847, 887
BssSI	CACGAG	1 cut(s)	923
BssT1I	CCWWGG	5 cut(s)	45, 125, 185, 397, 662
Bst2BI	CACGAG	1 cut(s)	923
Bst2UI	CCWGG	1 cut(s)	770
Bst4CI	ACNGT	2 cut(s)	173, 728
Bst6I	CTCTTC	2 cut(s)	82, 481
BstBI	TTCGAA	1 cut(s)	599
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	6 cut(s)	79, 99, 180, 327, 387, 668
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	494
BstKTI	GATC	9 cut(s)	109, 284, 393, 409, 439, 451, 543, 850, 890
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	9 cut(s)	106, 281, 390, 406, 436, 448, 540, 847, 887
BstNI	CCWGG	1 cut(s)	770
BstSCI	CCNGG	1 cut(s)	768
BstSFI	CTRYAG	1 cut(s)	588
BstV1I	GCAGC	1 cut(s)	986
BstV2I	GAAGAC	2 cut(s)	100, 701
BstX2I	RGATCY	3 cut(s)	281, 390, 406
BstYI	RGATCY	3 cut(s)	281, 390, 406
BsuRI	GGCC	3 cut(s)	19, 73, 940
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	494
BtsIMutI	CAGTG	3 cut(s)	13, 255, 816
Cac8I	GCNNGC	1 cut(s)	336
Csp6I	GTAC	7 cut(s)	190, 489, 534, 729, 795, 912, 928
CviAII	CATG	6 cut(s)	46, 344, 574, 632, 743, 891
CviQI	GTAC	7 cut(s)	190, 489, 534, 729, 795, 912, 928
DdeI	CTNAG	6 cut(s)	79, 99, 180, 327, 387, 668
DpnI	GATC	9 cut(s)	108, 283, 392, 408, 438, 450, 542, 849, 889
DpnII	GATC	9 cut(s)	106, 281, 390, 406, 436, 448, 540, 847, 887
EaeI	YGGCCR	1 cut(s)	17
Eam1104I	CTCTTC	2 cut(s)	82, 481
EarI	CTCTTC	2 cut(s)	82, 481
Ecl136II	GAGCTC	1 cut(s)	523
Eco130I	CCWWGG	5 cut(s)	45, 125, 185, 397, 662
Eco147I	AGGCCT	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	525
Eco53kI	GAGCTC	1 cut(s)	523
Eco57I	CTGAAG	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	523
EcoRII	CCWGG	1 cut(s)	768
EcoT14I	CCWWGG	5 cut(s)	45, 125, 185, 397, 662
EcoT22I	ATGCAT	1 cut(s)	550
EcoT38I	GRGCYC	1 cut(s)	525
ErhI	CCWWGG	5 cut(s)	45, 125, 185, 397, 662
FaeI	CATG	6 cut(s)	49, 347, 577, 635, 746, 894
FaqI	GGGAC	1 cut(s)	934
FatI	CATG	6 cut(s)	45, 343, 573, 631, 742, 890
FbaI	TGATCA	2 cut(s)	436, 448
Fnu4HI	GCNGC	1 cut(s)	975
FokI	GGATG	1 cut(s)	481
FriOI	GRGCYC	1 cut(s)	525
Fsp4HI	GCNGC	1 cut(s)	975
FspBI	CTAG	3 cut(s)	416, 471, 480
GluI	GCNGC	1 cut(s)	975
HaeIII	GGCC	3 cut(s)	19, 73, 940
Hin1II	CATG	6 cut(s)	49, 347, 577, 635, 746, 894
HindIII	AAGCTT	3 cut(s)	111, 332, 1055
HinfI	GANTC	6 cut(s)	65, 374, 596, 784, 919, 1038
HphI	GGTGA	1 cut(s)	364
Hpy188I	TCNGA	5 cut(s)	64, 102, 436, 1012, 1027
Hpy188III	TCNNGA	8 cut(s)	404, 440, 480, 529, 610, 680, 722, 923
Hpy99I	CGWCG	1 cut(s)	307
HpyAV	CCTTC	6 cut(s)	97, 204, 218, 836, 895, 1076
HpyCH4III	ACNGT	2 cut(s)	173, 728
HpyCH4V	TGCA	4 cut(s)	132, 548, 649, 746
HpyF3I	CTNAG	6 cut(s)	79, 99, 180, 327, 387, 668
Hsp92II	CATG	6 cut(s)	49, 347, 577, 635, 746, 894
Ksp22I	TGATCA	2 cut(s)	436, 448
Kzo9I	GATC	9 cut(s)	106, 281, 390, 406, 436, 448, 540, 847, 887
LguI	GCTCTTC	1 cut(s)	481
LmnI	GCTCC	3 cut(s)	520, 528, 583
Lsp1109I	GCAGC	1 cut(s)	986
LweI	GCATC	2 cut(s)	468, 557
MaeI	CTAG	3 cut(s)	416, 471, 480
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	9 cut(s)	108, 283, 392, 408, 438, 450, 542, 849, 889
MboI	GATC	9 cut(s)	106, 281, 390, 406, 436, 448, 540, 847, 887
MboII	GAAGA	9 cut(s)	99, 105, 276, 280, 291, 468, 701, 928, 1033
MflI	RGATCY	3 cut(s)	281, 390, 406
MhlI	GDGCHC	1 cut(s)	525
MlsI	TGGCCA	1 cut(s)	19
MluCI	AATT	8 cut(s)	118, 149, 166, 319, 483, 643, 653, 821
MluNI	TGGCCA	1 cut(s)	19
MmeI	TCCRAC	1 cut(s)	1005
Mox20I	TGGCCA	1 cut(s)	19
Mph1103I	ATGCAT	1 cut(s)	550
MroXI	GAANNNNTTC	1 cut(s)	569
MscI	TGGCCA	1 cut(s)	19
MseI	TTAA	6 cut(s)	39, 465, 560, 657, 1052, 1075
MslI	CAYNNNNRTG	2 cut(s)	741, 855
Msp20I	TGGCCA	1 cut(s)	19
MspR9I	CCNGG	1 cut(s)	770
Mva1269I	GAATGC	1 cut(s)	911
MvaI	CCWGG	1 cut(s)	770
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	9 cut(s)	106, 281, 390, 406, 436, 448, 540, 847, 887
NlaIII	CATG	6 cut(s)	49, 347, 577, 635, 746, 894
NlaIV	GGNNCC	1 cut(s)	579
NmeAIII	GCCGAG	1 cut(s)	491
NsiI	ATGCAT	1 cut(s)	550
NspV	TTCGAA	1 cut(s)	599
PceI	AGGCCT	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	481
PctI	GAATGC	1 cut(s)	911
PdmI	GAANNNNTTC	1 cut(s)	569
PfeI	GAWTC	6 cut(s)	65, 374, 596, 784, 919, 1038
PflMI	CCANNNNNTGG	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	976
PshBI	ATTAAT	1 cut(s)	560
Psp124BI	GAGCTC	1 cut(s)	525
Psp6I	CCWGG	1 cut(s)	768
PspGI	CCWGG	1 cut(s)	768
PspN4I	GGNNCC	1 cut(s)	579
PsuI	RGATCY	3 cut(s)	281, 390, 406
RsaI	GTAC	7 cut(s)	191, 490, 535, 730, 796, 913, 929
RsaNI	GTAC	7 cut(s)	190, 489, 534, 729, 795, 912, 928
RseI	CAYNNNNRTG	2 cut(s)	741, 855
SacI	GAGCTC	1 cut(s)	525
SapI	GCTCTTC	1 cut(s)	481
SaqAI	TTAA	6 cut(s)	39, 465, 560, 657, 1052, 1075
SatI	GCNGC	1 cut(s)	975
Sau3AI	GATC	9 cut(s)	106, 281, 390, 406, 436, 448, 540, 847, 887
ScaI	AGTACT	3 cut(s)	490, 535, 796
ScrFI	CCNGG	1 cut(s)	770
SduI	GDGCHC	1 cut(s)	525
SfaNI	GCATC	2 cut(s)	468, 557
SfcI	CTRYAG	1 cut(s)	588
SfuI	TTCGAA	1 cut(s)	599
SmiMI	CAYNNNNRTG	2 cut(s)	741, 855
SmlI	CTYRAG	2 cut(s)	262, 527
SmoI	CTYRAG	2 cut(s)	262, 527
Sse9I	AATT	8 cut(s)	118, 149, 166, 319, 483, 643, 653, 821
SseBI	AGGCCT	1 cut(s)	73
SspMI	CTAG	3 cut(s)	416, 471, 480
SstI	GAGCTC	1 cut(s)	525
StuI	AGGCCT	1 cut(s)	73
StyD4I	CCNGG	1 cut(s)	768
StyI	CCWWGG	5 cut(s)	45, 125, 185, 397, 662
TaaI	ACNGT	2 cut(s)	173, 728
TaqI	TCGA	1 cut(s)	599
TasI	AATT	8 cut(s)	118, 149, 166, 319, 483, 643, 653, 821
TatI	WGTACW	4 cut(s)	488, 533, 794, 927
TfiI	GAWTC	6 cut(s)	65, 374, 596, 784, 919, 1038
Tru1I	TTAA	6 cut(s)	39, 465, 560, 657, 1052, 1075
Tru9I	TTAA	6 cut(s)	39, 465, 560, 657, 1052, 1075
TscAI	CASTG	3 cut(s)	20, 255, 823
TseI	GCWGC	1 cut(s)	974
TspDTI	ATGAA	6 cut(s)	282, 312, 483, 562, 578, 1058
TspRI	CASTG	3 cut(s)	20, 255, 823
Van91I	CCANNNNNTGG	1 cut(s)	254
VspI	ATTAAT	1 cut(s)	560
XapI	RAATTY	4 cut(s)	149, 643, 653, 821
XbaI	TCTAGA	1 cut(s)	479
XmnI	GAANNNNTTC	1 cut(s)	569
XspI	CTAG	3 cut(s)	416, 471, 480
ZrmI	AGTACT	3 cut(s)	490, 535, 796
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.