Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002079

Physical Location & Seq

Genomic Coordinates Forward (+)

52925934 .. 52930880

Gene Structure 4947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0431000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2070 bp

ATGCCTTCTATAGACGTTTCCGATTATGTGCTGGAGGCTCCGAAGAAGGAGAAGAAGATGAAAAAGTCGAAAAAGGAGTCCATAACCGACTCTCCGATTAGTGAGAAGAAGAGCAGTAGCAAGAAGGAGTCAAAGCTGAAGAAGCGGAAAGCGCTGGATATGGAGGCCGACGACGAAGACAGGAGCGACACCAGCTCCGAGCTCGGCGAGCCTGTCAATTTGAAGCCCAACGGCGATTCTTCGGTGGAGAAGAGCAAGAAGAAATCGAAGAAGGCCAAGGTGGAGGAGGAGGAAGAGGAGAAGGTTGAGGTGAAGAAGGATGATCCTAATGCCGTAACCAAGTTTCGGATTTCGGCGCCGTTGAGGGCTAAGCTGAAGGAGAAGGGGATCGAGGCCTTGTTTACGATTCAGGCCATGACGTTCGACACCATTTTGGACGGGGCGGACTTGGTGGGCCGGGCTCGCACCGGTCAGGGTAAAACTCTGGCTTTTGTGTTGCCTATATTGGAGTCGTTAACAAATGGTTCTGCTAAAGAATTTCGAAAGACTGGATACGGCAGAGCACCGACTGTTATTGTTCTTTTACCCACCAGGGAGTTGGCCAAGCAGGTGTTTGCGGACTTTGAATTTTATGGTGGTGCTGTGGGGTTAGCATCATGTTGTGTATATGGTGGATCTCCTTACGCAGCTCAAGAATATAAGTTGAAGAGAGGGGTTGATGTCATTGTGGGAACACCTGGTCGTATCAAGGATCATATTGAGAGGGGGAATATAGACTTGAGCACTTTGAAGTTTCGGGTCCTTGATGAAGCTGATGAAATGCTGAGGATGGGTTTCGTTGATGACGTTGAACAAATTCTAGGCAAGGTCAAAGATGTAACTAAAGTTCAAACGCTTCTCTTCAGTGCAACCTTACCCTCTTGGGTGCAAAATATTTCCAAAAGGTTTCTTAAATCAGATAAGAAAACTGCAGATCTGGTTGGTAATGAAAAGATGAAGGCCAGCGTCAATGTTAGGCATATTGTTCTTCCTTGCTCTAGTTCAGCTAGAGTAGACGTTATTCCTGACATCATTCGTTGTTATAGCAGTGGAGGTCGCACTATTATTTTCACTGAGACAAAGGATTGTGCTTCTGAGCTTTCTGAGAGGTTGCATGGAGCAAGACCTTTGCATGGGGACATACAGCAAGGTCAGCGGGAGGTCACACTTGCAGGTTTCAGGTCTGGCAAATTCTCGACATTAGTAGCCACAAATGTGGCAGCTCGTGGACTGGATATCAATGATGTTCAATTAATTATTCAGTGTGAACCTCCACGTGATGTAGAAGACTATATCCATCGATCCGGACGCACAGGGAGAGCCGGCAATTCTGGAGTTGCTGTAATGCTTTATGACCCTAGAAAGTCAAACATATCAAAGATCGAAAGAGAATCTGGGGTGAAATTTGAGCATGTTTCTGCTCCTCAGCCAATTGACGTTGCCAAAGCTGCAGGTCTTAGTGCCGCAGAAATGATTACTAATGTCTCTGATAGCGTAATTCCTGCATTCAAGAGTGTTGCTCAGGAGCTTCTAAACACCTCAGGCCTATCTGCAGTAGATCTACTGTCAAAGGCTCTTGCTAAGGCTGCTGGCTACACCGATGTAAAGAAGAGGTCACTTCTGAGTTCTATGGAGAACCATGTCACCGTACTGCTTGAAGCTGGAAAGCCCATTTACACAGCATCTTTTGCTTATTCGGCCTTGAGGAGGTTCTTGCCGGAGGAGAAGGTCGAGTCAGTGAAGGGTATGGCGCTAACAACTGATGGAAAGGGTGCAGTGTTTGATGTAGCTGCTGAAGATTTGGATATGTTTCTTACTGGTTCGCAAAATGCAGCTGGTATCAGCATACAGGTCTTGGACTCTTTGCCGAGTTTACAAGAAAAAGAAGCAAGGGGAGGAAGATTTGGCGGTGGTGGCCGTGGTGGTAGTAGGTTTGGTGGAAGAGGAGGTGGCAGGGGTTTCTCTAATGGAAGAAATGATAGGTTTGGTGGCGGCGGTGGCAGAGGCCGCGGCAACTACAACAGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

689

Amino Acids

74.67

Weight (kDa)

9.23

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	135 - 311	2e-44	DEAD/DEAH box helicase
Helicase_C	PF00271	351 - 455	1.9e-27	Helicase conserved C-terminal domain
DD_DDX21-DDX50	PF26142	489 - 541	1.5e-18	DDX21/DDX50 dimerisation domain
GUCT	PF08152	544 - 639	1.8e-28	GUCT (NUC152) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46590 AT2G46590 AT3G61850 AT3G61850 AT3G61850 AT3G61850 AT3G61850
fragaria_vesca	FvH4_7g17000 FvH4_7g17000 FvH4_7g17000 FvH4_7g32170 FvH4_7g32170 FvH4_7g32170
malus_domestica	MD01G1084700.v1.1 MD01G1224500.v1.1 MD07G1153300.v1.1 MD07G1295200.v1.1
prunus_persica	Prupe.2G192300_v2.0.a1 Prupe.2G192300_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1
pyrus_communis	pycom01g23320 pycom07g26780
rosa_chinensis	RchiOBHm_Chr1g0360381 RchiOBHm_Chr1g0381791
rosa_laevigata	RLG00000026205 RLG00000027812
rosa_multiflora	Rmu_sc0008418.1_g000008 Rmu_ssc0000368.1_g000076
rosa_roxburghii	Rroxscaffold_4G00278450 Rroxscaffold_4G00296170
rosa_rugosa	Rorug01G0276400 Rorug01G0276500 Rorug01G0431000
rosa_samantha	Rh1AG290500 Rh1AG454400 Rh1BG255600 Rh1CG273300 Rh1CG426000 Rh1DG285400 Rh1DG443700
rosa_wichuraiana	Rw1G025720 Rw1G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	598
Acc36I	ACCTGC	3 cut(s)	598, 1202, 1481
AccB1I	GGYRCC	1 cut(s)	355
AccI	GTMKAC	1 cut(s)	1053
AccII	CGCG	1 cut(s)	2049
AccIII	TCCGGA	1 cut(s)	1343
AclWI	GGATC	5 cut(s)	317, 395, 682, 759, 1335
AcoI	YGGCCR	2 cut(s)	600, 1954
AcsI	RAATTY	5 cut(s)	536, 626, 855, 1229, 1442
AcuI	CTGAAG	4 cut(s)	158, 395, 886, 1854
AcvI	CACGTG	1 cut(s)	1316
AcyI	GRCGYC	1 cut(s)	356
AfaI	GTAC	1 cut(s)	1689
AfeI	AGCGCT	1 cut(s)	153
AfiI	CCNNNNNNNGG	3 cut(s)	345, 1172, 1746
AgeI	ACCGGT	1 cut(s)	467
AgsI	TTSAA	9 cut(s)	223, 626, 706, 790, 851, 890, 1289, 1549, 1697
AjnI	CCWGG	2 cut(s)	590, 736
AleI	CACNNNNGTG	1 cut(s)	1253
Alw21I	GWGCWC	3 cut(s)	204, 565, 785
Alw26I	GTCTC	2 cut(s)	1109, 1528
AlwI	GGATC	5 cut(s)	317, 395, 682, 759, 1335
Aor13HI	TCCGGA	1 cut(s)	1343
Aor51HI	AGCGCT	1 cut(s)	153
ApeKI	GCWGC	6 cut(s)	686, 1259, 1487, 1625, 1829, 1871
ApoI	RAATTY	5 cut(s)	536, 626, 855, 1229, 1442
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AseI	ATTAAT	1 cut(s)	1292
AsiGI	ACCGGT	1 cut(s)	467
Asp700I	GAANNNNTTC	1 cut(s)	855
AspLEI	GCGC	3 cut(s)	154, 358, 1792
AspS9I	GGNCC	2 cut(s)	454, 799
AsuC2I	CCSGG	1 cut(s)	458
AsuHPI	GGTGA	3 cut(s)	322, 1450, 1675
AsuII	TTCGAA	1 cut(s)	541
AvaII	GGWCC	1 cut(s)	799
AxyI	CCTNAGG	1 cut(s)	1579
BalI	TGGCCA	1 cut(s)	602
BanI	GGYRCC	1 cut(s)	355
BanII	GRGCYC	2 cut(s)	204, 463
BauI	CACGAG	1 cut(s)	1263
BbrPI	CACGTG	1 cut(s)	1316
BbsI	GAAGAC	2 cut(s)	183, 1332
Bbv12I	GWGCWC	3 cut(s)	204, 565, 785
BbvCI	CCTCAGC	2 cut(s)	824, 1464
BbvI	GCAGC	6 cut(s)	698, 1271, 1474, 1612, 1816, 1883
BccI	CCATC	4 cut(s)	823, 1344, 1796, 2058
BceAI	ACGGC	5 cut(s)	247, 317, 343, 571, 1941
BciT130I	CCWGG	2 cut(s)	592, 738
BciVI	GTATCC	1 cut(s)	545
BcnI	CCSGG	1 cut(s)	458
BcoDI	GTCTC	2 cut(s)	1109, 1528
BfaI	CTAG	4 cut(s)	860, 1038, 1047, 1398
BfmI	CTRYAG	4 cut(s)	9, 969, 1488, 1590
BfoI	RGCGCY	3 cut(s)	155, 359, 1793
BfuAI	ACCTGC	3 cut(s)	598, 1202, 1481
BfuI	GTATCC	1 cut(s)	545
BglII	AGATCT	2 cut(s)	973, 1597
BlpI	GCTNAGC	1 cut(s)	369
Bme1390I	CCNGG	3 cut(s)	458, 592, 738
Bme18I	GGWCC	1 cut(s)	799
BmgT120I	GGNCC	2 cut(s)	454, 799
BmiI	GGNNCC	3 cut(s)	39, 357, 800
BmrFI	CCNGG	3 cut(s)	458, 592, 738
BmsI	GCATC	2 cut(s)	662, 1730
BpiI	GAAGAC	2 cut(s)	183, 1332
BplI	GAGNNNNNCTC	2 cut(s)	1543, 1575
BpmI	CTGGAG	2 cut(s)	53, 1392
Bpu10I	CCTNAGC	4 cut(s)	824, 1464, 1560, 1620
Bpu1102I	GCTNAGC	1 cut(s)	369
Bpu14I	TTCGAA	1 cut(s)	541
BpuEI	CTTGAG	3 cut(s)	675, 799, 1762
BpuMI	CCSGG	1 cut(s)	458
Bsa29I	ATCGAT	1 cut(s)	1339
BsaAI	YACGTR	1 cut(s)	1316
BsaHI	GRCGYC	1 cut(s)	356
BsaJI	CCNNGG	4 cut(s)	276, 591, 1957, 2047
BsaWI	WCCGGW	2 cut(s)	467, 1343
BsaXI	ACNNNNNCTCC	6 cut(s)	76, 106, 179, 209, 1365, 1395
Bsc4I	CCNNNNNNNGG	3 cut(s)	345, 1172, 1746
Bse118I	RCCGGY	2 cut(s)	467, 1361
Bse1I	ACTGG	3 cut(s)	553, 1275, 1861
Bse21I	CCTNAGG	1 cut(s)	1579
BseAI	TCCGGA	1 cut(s)	1343
BseBI	CCWGG	2 cut(s)	592, 738
BseCI	ATCGAT	1 cut(s)	1339
BseDI	CCNNGG	4 cut(s)	276, 591, 1957, 2047
BseGI	GGATG	2 cut(s)	325, 834
BseLI	CCNNNNNNNGG	3 cut(s)	345, 1172, 1746
BseMII	CTCAG	8 cut(s)	815, 1104, 1125, 1134, 1478, 1574, 1593, 1652
BseNI	ACTGG	3 cut(s)	553, 1275, 1861
BseRI	GAGGAG	7 cut(s)	299, 302, 311, 1452, 1759, 1775, 1998
BseXI	GCAGC	6 cut(s)	698, 1271, 1474, 1612, 1816, 1883
BsgI	GTGCAG	1 cut(s)	1833
Bsh1236I	CGCG	1 cut(s)	2049
BshNI	GGYRCC	1 cut(s)	355
BshTI	ACCGGT	1 cut(s)	467
BshVI	ATCGAT	1 cut(s)	1339
BsiHKAI	GWGCWC	3 cut(s)	204, 565, 785
BsiSI	CCGG	5 cut(s)	457, 468, 1344, 1362, 1757
BslFI	GGGAC	1 cut(s)	1190
BslI	CCNNNNNNNGG	3 cut(s)	345, 1172, 1746
BsmAI	GTCTC	2 cut(s)	1109, 1528
BsmFI	GGGAC	1 cut(s)	1190
BsmI	GAATGC	1 cut(s)	1544
Bsp119I	TTCGAA	1 cut(s)	541
Bsp1286I	GDGCHC	4 cut(s)	204, 463, 565, 785
Bsp13I	TCCGGA	1 cut(s)	1343
Bsp143I	GATC	8 cut(s)	322, 387, 674, 751, 973, 1340, 1419, 1597
Bsp1720I	GCTNAGC	1 cut(s)	369
BspCNI	CTCAG	8 cut(s)	816, 1105, 1126, 1135, 1477, 1573, 1592, 1653
BspDI	ATCGAT	1 cut(s)	1339
BspEI	TCCGGA	1 cut(s)	1343
BspFNI	CGCG	1 cut(s)	2049
BspLI	GGNNCC	3 cut(s)	39, 357, 800
BspMAI	CTGCAG	3 cut(s)	973, 1492, 1594
BspMI	ACCTGC	3 cut(s)	598, 1202, 1481
BspPI	GGATC	5 cut(s)	317, 395, 682, 759, 1335
BspQI	GCTCTTC	2 cut(s)	104, 245
BspT104I	TTCGAA	1 cut(s)	541
BspT107I	GGYRCC	1 cut(s)	355
BsrFI	RCCGGY	2 cut(s)	467, 1361
BsrI	ACTGG	3 cut(s)	553, 1275, 1861
BssAI	RCCGGY	2 cut(s)	467, 1361
BssECI	CCNNGG	4 cut(s)	276, 591, 1957, 2047
BssMI	GATC	8 cut(s)	322, 387, 674, 751, 973, 1340, 1419, 1597
BssNI	GRCGYC	1 cut(s)	356
BssSI	CACGAG	1 cut(s)	1263
BssT1I	CCWWGG	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	1263
Bst2UI	CCWGG	2 cut(s)	592, 738
Bst4CI	ACNGT	3 cut(s)	571, 1605, 1687
Bst6I	CTCTTC	7 cut(s)	104, 245, 288, 701, 905, 1643, 1975
BstACI	GRCGYC	1 cut(s)	356
BstAPI	GCANNNNNTGC	1 cut(s)	1727
BstBAI	YACGTR	1 cut(s)	1316
BstBI	TTCGAA	1 cut(s)	541
BstC8I	GCNNGC	5 cut(s)	209, 463, 1003, 1363, 1630
BstDSI	CCRYGG	2 cut(s)	1957, 2047
BstENI	CCTNNNNNAGG	1 cut(s)	1744
BstF5I	GGATG	2 cut(s)	325, 834
BstFNI	CGCG	1 cut(s)	2049
BstH2I	RGCGCY	3 cut(s)	155, 359, 1793
BstHHI	GCGC	3 cut(s)	154, 358, 1792
BstKTI	GATC	8 cut(s)	325, 390, 677, 754, 976, 1343, 1422, 1600
BstMAI	GTCTC	2 cut(s)	1109, 1528
BstMBI	GATC	8 cut(s)	322, 387, 674, 751, 973, 1340, 1419, 1597
BstNI	CCWGG	2 cut(s)	592, 738
BstNSI	RCATGY	1 cut(s)	1454
BstSCI	CCNGG	3 cut(s)	456, 590, 736
BstSFI	CTRYAG	4 cut(s)	9, 969, 1488, 1590
BstUI	CGCG	1 cut(s)	2049
BstV1I	GCAGC	6 cut(s)	698, 1271, 1474, 1612, 1816, 1883
BstV2I	GAAGAC	2 cut(s)	183, 1332
BstX2I	RGATCY	3 cut(s)	674, 973, 1597
BstXI	CCANNNNNNTGG	2 cut(s)	598, 1255
BstYI	RGATCY	3 cut(s)	674, 973, 1597
Bsu15I	ATCGAT	1 cut(s)	1339
Bsu36I	CCTNAGG	1 cut(s)	1579
BsuI	GTATCC	1 cut(s)	545
BsuTUI	ATCGAT	1 cut(s)	1339
BtgI	CCRYGG	2 cut(s)	1957, 2047
BtsCI	GGATG	2 cut(s)	325, 834
BtsI	GCAGTG	2 cut(s)	1093, 1821
BtsIMutI	CAGTG	6 cut(s)	910, 1093, 1110, 1307, 1782, 1821
BveI	ACCTGC	3 cut(s)	598, 1202, 1481
Cac8I	GCNNGC	5 cut(s)	209, 463, 1003, 1363, 1630
CfoI	GCGC	3 cut(s)	154, 358, 1792
Cfr10I	RCCGGY	2 cut(s)	467, 1361
Cfr13I	GGNCC	2 cut(s)	454, 799
Cfr42I	CCGCGG	1 cut(s)	2050
ClaI	ATCGAT	1 cut(s)	1339
CseI	GACGC	2 cut(s)	994, 1356
CsiI	ACCWGGT	1 cut(s)	736
Csp6I	GTAC	1 cut(s)	1688
CspAI	ACCGGT	1 cut(s)	467
CviAII	CATG	6 cut(s)	415, 657, 1154, 1172, 1451, 1679
CviQI	GTAC	1 cut(s)	1688
DinI	GGCGCC	1 cut(s)	357
DpnI	GATC	8 cut(s)	324, 389, 676, 753, 975, 1342, 1421, 1599
DpnII	GATC	8 cut(s)	322, 387, 674, 751, 973, 1340, 1419, 1597
EaeI	YGGCCR	2 cut(s)	600, 1954
Eam1104I	CTCTTC	7 cut(s)	104, 245, 288, 701, 905, 1643, 1975
EarI	CTCTTC	7 cut(s)	104, 245, 288, 701, 905, 1643, 1975
EciI	GGCGGA	1 cut(s)	458
Ecl136II	GAGCTC	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	276
Eco147I	AGGCCT	2 cut(s)	395, 1584
Eco24I	GRGCYC	2 cut(s)	204, 463
Eco32I	GATATC	1 cut(s)	1276
Eco47I	GGWCC	1 cut(s)	799
Eco47III	AGCGCT	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	4 cut(s)	158, 395, 886, 1854
Eco72I	CACGTG	1 cut(s)	1316
Eco81I	CCTNAGG	1 cut(s)	1579
EcoICRI	GAGCTC	1 cut(s)	202
EcoNI	CCTNNNNNAGG	1 cut(s)	1744
EcoO109I	RGGNCCY	1 cut(s)	799
EcoRII	CCWGG	2 cut(s)	590, 736
EcoRV	GATATC	1 cut(s)	1276
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	2 cut(s)	204, 463
EgeI	GGCGCC	1 cut(s)	357
EheI	GGCGCC	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	6 cut(s)	418, 660, 1157, 1175, 1454, 1682
FaqI	GGGAC	1 cut(s)	1190
FatI	CATG	6 cut(s)	414, 656, 1153, 1171, 1450, 1678
FauI	CCCGC	1 cut(s)	1188
FblI	GTMKAC	1 cut(s)	1053
FokI	GGATG	2 cut(s)	332, 841
FriOI	GRGCYC	2 cut(s)	204, 463
FspBI	CTAG	4 cut(s)	860, 1038, 1047, 1398
GlaI	GCGC	3 cut(s)	153, 357, 1791
GsuI	CTGGAG	2 cut(s)	53, 1392
HaeII	RGCGCY	3 cut(s)	155, 359, 1793
HapII	CCGG	5 cut(s)	457, 468, 1344, 1362, 1757
HgaI	GACGC	2 cut(s)	994, 1356
HhaI	GCGC	3 cut(s)	154, 358, 1792
Hin1I	GRCGYC	1 cut(s)	356
Hin1II	CATG	6 cut(s)	418, 660, 1157, 1175, 1454, 1682
Hin6I	GCGC	3 cut(s)	152, 356, 1790
HinP1I	GCGC	3 cut(s)	152, 356, 1790
HincII	GTYRAC	1 cut(s)	516
HindII	GTYRAC	1 cut(s)	516
HinfI	GANTC	9 cut(s)	77, 89, 128, 236, 406, 509, 1430, 1772, 1898
HpaI	GTTAAC	1 cut(s)	516
HpaII	CCGG	5 cut(s)	457, 468, 1344, 1362, 1757
HphI	GGTGA	3 cut(s)	322, 1450, 1675
Hpy166II	GTNNAC	6 cut(s)	402, 516, 1054, 1268, 1307, 1913
Hpy188III	TCNNGA	7 cut(s)	692, 1064, 1234, 1344, 1371, 1549, 1562
Hpy8I	GTNNAC	6 cut(s)	402, 516, 1054, 1268, 1307, 1913
Hpy99I	CGWCG	2 cut(s)	173, 176
HpyCH4III	ACNGT	3 cut(s)	571, 1605, 1687
HpyCH4IV	ACGT	6 cut(s)	15, 419, 846, 1056, 1315, 1476
HpySE526I	ACGT	6 cut(s)	15, 419, 846, 1056, 1315, 1476
Hsp92I	GRCGYC	1 cut(s)	356
Hsp92II	CATG	6 cut(s)	418, 660, 1157, 1175, 1454, 1682
HspAI	GCGC	3 cut(s)	152, 356, 1790
KasI	GGCGCC	1 cut(s)	355
Kpn2I	TCCGGA	1 cut(s)	1343
KroI	GCCGGC	1 cut(s)	1361
KroNI	GCCGGC	1 cut(s)	1363
KspAI	GTTAAC	1 cut(s)	516
KspI	CCGCGG	1 cut(s)	2050
Kzo9I	GATC	8 cut(s)	322, 387, 674, 751, 973, 1340, 1419, 1597
LguI	GCTCTTC	2 cut(s)	104, 245
LmnI	GCTCC	6 cut(s)	43, 183, 200, 1157, 1465, 1564
Lsp1109I	GCAGC	6 cut(s)	698, 1271, 1474, 1612, 1816, 1883
LweI	GCATC	2 cut(s)	662, 1730
MabI	ACCWGGT	1 cut(s)	736
MaeI	CTAG	4 cut(s)	860, 1038, 1047, 1398
MaeII	ACGT	6 cut(s)	15, 419, 846, 1056, 1315, 1476
MaeIII	GTNAC	5 cut(s)	334, 877, 1201, 1653, 1681
MalI	GATC	8 cut(s)	324, 389, 676, 753, 975, 1342, 1421, 1599
MboI	GATC	8 cut(s)	322, 387, 674, 751, 973, 1340, 1419, 1597
MfeI	CAATTG	1 cut(s)	1470
MflI	RGATCY	3 cut(s)	674, 973, 1597
MhlI	GDGCHC	4 cut(s)	204, 463, 565, 785
MlsI	TGGCCA	1 cut(s)	602
MluNI	TGGCCA	1 cut(s)	602
Mly113I	GGCGCC	1 cut(s)	356
MlyI	GAGTC	6 cut(s)	83, 86, 137, 518, 1781, 1892
Mox20I	TGGCCA	1 cut(s)	602
MroI	TCCGGA	1 cut(s)	1343
MroNI	GCCGGC	1 cut(s)	1361
MroXI	GAANNNNTTC	1 cut(s)	855
MscI	TGGCCA	1 cut(s)	602
MseI	TTAA	3 cut(s)	515, 951, 1292
MslI	CAYNNNNRTG	1 cut(s)	1253
Msp20I	TGGCCA	1 cut(s)	602
MspA1I	CMGCKG	3 cut(s)	1195, 1874, 2049
MspI	CCGG	5 cut(s)	457, 468, 1344, 1362, 1757
MspR9I	CCNGG	3 cut(s)	458, 592, 738
MunI	CAATTG	1 cut(s)	1470
Mva1269I	GAATGC	1 cut(s)	1544
MvaI	CCWGG	2 cut(s)	592, 738
MvnI	CGCG	1 cut(s)	2049
NaeI	GCCGGC	1 cut(s)	1363
NarI	GGCGCC	1 cut(s)	356
NciI	CCSGG	1 cut(s)	458
NdeII	GATC	8 cut(s)	322, 387, 674, 751, 973, 1340, 1419, 1597
NgoMIV	GCCGGC	1 cut(s)	1361
NlaIII	CATG	6 cut(s)	418, 660, 1157, 1175, 1454, 1682
NlaIV	GGNNCC	3 cut(s)	39, 357, 800
NmeAIII	GCCGAG	2 cut(s)	183, 1932
NmuCI	GTSAC	3 cut(s)	1201, 1653, 1681
NspI	RCATGY	1 cut(s)	1454
NspV	TTCGAA	1 cut(s)	541
OliI	CACNNNNGTG	1 cut(s)	1253
PaqCI	CACCTGC	1 cut(s)	598
PceI	AGGCCT	2 cut(s)	395, 1584
PciSI	GCTCTTC	2 cut(s)	104, 245
PcsI	WCGNNNNNNNCGW	1 cut(s)	843
PctI	GAATGC	1 cut(s)	1544
PdiI	GCCGGC	1 cut(s)	1363
PdmI	GAANNNNTTC	1 cut(s)	855
PfeI	GAWTC	3 cut(s)	236, 406, 1430
PinAI	ACCGGT	1 cut(s)	467
PleI	GAGTC	6 cut(s)	83, 85, 136, 517, 1780, 1892
PluTI	GGCGCC	1 cut(s)	359
PmaCI	CACGTG	1 cut(s)	1316
PmlI	CACGTG	1 cut(s)	1316
PpsI	GAGTC	6 cut(s)	83, 85, 136, 517, 1780, 1892
Ppu21I	YACGTR	1 cut(s)	1316
PpuMI	RGGWCCY	1 cut(s)	799
PshBI	ATTAAT	1 cut(s)	1292
Psp124BI	GAGCTC	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	799
Psp6I	CCWGG	2 cut(s)	590, 736
PspCI	CACGTG	1 cut(s)	1316
PspGI	CCWGG	2 cut(s)	590, 736
PspN4I	GGNNCC	3 cut(s)	39, 357, 800
PspPI	GGNCC	2 cut(s)	454, 799
PspPPI	RGGWCCY	1 cut(s)	799
PsrI	GAACNNNNNNTAC	2 cut(s)	870, 902
PstI	CTGCAG	3 cut(s)	973, 1492, 1594
PsuI	RGATCY	3 cut(s)	674, 973, 1597
PvuII	CAGCTG	1 cut(s)	1874
RsaI	GTAC	1 cut(s)	1689
RsaNI	GTAC	1 cut(s)	1688
RseI	CAYNNNNRTG	1 cut(s)	1253
SacI	GAGCTC	1 cut(s)	204
SacII	CCGCGG	1 cut(s)	2050
SapI	GCTCTTC	2 cut(s)	104, 245
SaqAI	TTAA	3 cut(s)	515, 951, 1292
Sau3AI	GATC	8 cut(s)	322, 387, 674, 751, 973, 1340, 1419, 1597
Sau96I	GGNCC	2 cut(s)	454, 799
SchI	GAGTC	6 cut(s)	83, 86, 137, 518, 1781, 1892
ScrFI	CCNGG	3 cut(s)	458, 592, 738
SduI	GDGCHC	4 cut(s)	204, 463, 565, 785
SexAI	ACCWGGT	1 cut(s)	736
SfaNI	GCATC	2 cut(s)	662, 1730
SfcI	CTRYAG	4 cut(s)	9, 969, 1488, 1590
SfoI	GGCGCC	1 cut(s)	357
Sfr303I	CCGCGG	1 cut(s)	2050
SfuI	TTCGAA	1 cut(s)	541
SgrBI	CCGCGG	1 cut(s)	2050
SinI	GGWCC	1 cut(s)	799
SmiMI	CAYNNNNRTG	1 cut(s)	1253
SmlI	CTYRAG	3 cut(s)	690, 778, 1741
SmoI	CTYRAG	3 cut(s)	690, 778, 1741
SseBI	AGGCCT	2 cut(s)	395, 1584
SspDI	GGCGCC	1 cut(s)	355
SspI	AATATT	1 cut(s)	934
SspMI	CTAG	4 cut(s)	860, 1038, 1047, 1398
SstI	GAGCTC	1 cut(s)	204
StuI	AGGCCT	2 cut(s)	395, 1584
StyD4I	CCNGG	3 cut(s)	456, 590, 736
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	3 cut(s)	571, 1605, 1687
TaiI	ACGT	6 cut(s)	18, 422, 849, 1059, 1318, 1479
TaqI	TCGA	9 cut(s)	68, 266, 390, 423, 541, 1235, 1339, 1422, 1770
TauI	GCSGC	4 cut(s)	1505, 2034, 2049, 2052
TfiI	GAWTC	3 cut(s)	236, 406, 1430
Tru1I	TTAA	3 cut(s)	515, 951, 1292
Tru9I	TTAA	3 cut(s)	515, 951, 1292
TscAI	CASTG	6 cut(s)	910, 1093, 1117, 1307, 1782, 1821
TseFI	GTSAC	3 cut(s)	1201, 1653, 1681
TseI	GCWGC	6 cut(s)	686, 1259, 1487, 1625, 1829, 1871
Tsp45I	GTSAC	3 cut(s)	1201, 1653, 1681
TspDTI	ATGAA	5 cut(s)	74, 822, 831, 1002, 1010
TspRI	CASTG	6 cut(s)	910, 1093, 1117, 1307, 1782, 1821
VpaK11BI	GGWCC	1 cut(s)	799
VspI	ATTAAT	1 cut(s)	1292
XagI	CCTNNNNNAGG	1 cut(s)	1744
XapI	RAATTY	5 cut(s)	536, 626, 855, 1229, 1442
XceI	RCATGY	1 cut(s)	1454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	595
XmiI	GTMKAC	1 cut(s)	1053
XmnI	GAANNNNTTC	1 cut(s)	855
XspI	CTAG	4 cut(s)	860, 1038, 1047, 1398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.