Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002079

Physical Location & Seq

Genomic Coordinates Forward (+)

23145535 .. 23147861

Gene Structure 2327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G192300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGACACTGCTCAATGGCCGCAGGAGAGTGGAGAACTGGACAAGGCCATGGAAGATCATGAGATGGGGTCTAATGCGTGCCCAAGGTCAGCTTTAGAGAAAAGGGCAAGGCCTCAAGAGCAATTGAATTGTCCAAGGTGCAATTCAACCAACACCAAGTTTTGTTACTACAACAACTACAGCCTCACTCAACCAAGGTACTTTTGCAAGACATGCAGAAGGTATTGGACTGAAGGTGGAACTCTCAGAAATGTCCCAGTTGGAGGAGGTTCAAGAAAGAACAAGAAATCCACATCATCATCTGCATCATCATCAGCTTCACTATTATCAAAGAATAGTATTCCTGATCTCAACCCACCAAGTAGCCTCTCACACTTTTCAGCTCATCAAAACCCTAGGAGCACCCATGAAGGCCAAGATCTTAATCTGGCTTTCAATGCCATGGAGCAGTACCAACAAAACCCAGCAGCTGGAGCTAGCACTTCCTCATCAGCTCCTCTTTCAGCCATGGAGCTGCTTAGGACTGGCATTGCTTCCAGAGGTGTGAATTCATTTATACCAACCCAGAATATGGCTGATCATTCAAATACTCTCTATGCATCATCACCTGGGTTCTCCTTGCAAGAATTCAAACCAAACCTTGGTTTCTGTGTTGATGGGCTTGGAAATAGGTATGGCGATCATGAGATTAATGGTGGAAGGCTCTTGTTTCCATTTGGGGACTTGAAACAGATTTCAAGCTCTACAGCCCATCATGAACTTGATCATCATCAGAATAAGGGGCAAGGCAATCCAACTGGTTATTGGAATGGTTTATTGGGTGGAGGCTCGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009415 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010029 GO:0010030 GO:0010035 GO:0010114 GO:0010161 GO:0010371 GO:0010372 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0042221 GO:0043455 GO:0045828 GO:0045834 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0090351 GO:0104004 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

279

Amino Acids

30.37

Weight (kDa)

8.15

Isoelectric Point (pI)

40.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46590 AT2G46590 AT3G61850 AT3G61850 AT3G61850 AT3G61850 AT3G61850
fragaria_vesca	FvH4_7g17000 FvH4_7g17000 FvH4_7g17000 FvH4_7g32170 FvH4_7g32170 FvH4_7g32170
malus_domestica	MD01G1084700.v1.1 MD01G1224500.v1.1 MD07G1153300.v1.1 MD07G1295200.v1.1
prunus_persica	Prupe.2G192300_v2.0.a1 Prupe.2G192300_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1
pyrus_communis	pycom01g23320 pycom07g26780
rosa_chinensis	RchiOBHm_Chr1g0360381 RchiOBHm_Chr1g0381791
rosa_laevigata	RLG00000026205 RLG00000027812
rosa_multiflora	Rmu_sc0008418.1_g000008 Rmu_ssc0000368.1_g000076
rosa_roxburghii	Rroxscaffold_4G00278450 Rroxscaffold_4G00296170
rosa_rugosa	Rorug01G0276400 Rorug01G0276500 Rorug01G0431000
rosa_samantha	Rh1AG290500 Rh1AG454400 Rh1BG255600 Rh1CG273300 Rh1CG426000 Rh1DG285400 Rh1DG443700
rosa_wichuraiana	Rw1G025720 Rw1G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	470, 571, 641
AciI	CCGC	1 cut(s)	20
AcoI	YGGCCR	1 cut(s)	17
AcsI	RAATTY	2 cut(s)	547, 626
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	2 cut(s)	200, 452
AfiI	CCNNNNNNNGG	4 cut(s)	263, 470, 571, 641
AgsI	TTSAA	8 cut(s)	127, 147, 273, 436, 585, 631, 727, 738
AjnI	CCWGG	1 cut(s)	607
AjuI	GAANNNNNNNTTGG	4 cut(s)	127, 159, 800, 832
AloI	GAACNNNNNNTCC	2 cut(s)	272, 304
AluBI	AGCT	8 cut(s)	92, 317, 383, 470, 476, 494, 514, 741
AluI	AGCT	8 cut(s)	92, 317, 383, 470, 476, 494, 514, 741
Alw21I	GWGCWC	1 cut(s)	404
AlwNI	CAGNNNCTG	1 cut(s)	470
AoxI	GGCC	4 cut(s)	17, 45, 110, 412
ApeKI	GCWGC	2 cut(s)	467, 514
ApoI	RAATTY	2 cut(s)	547, 626
AseI	ATTAAT	1 cut(s)	690
AspA2I	CCTAGG	1 cut(s)	395
AsuHPI	GGTGA	1 cut(s)	597
AsuNHI	GCTAGC	1 cut(s)	476
AvrII	CCTAGG	1 cut(s)	395
BaeGI	GKGCMC	1 cut(s)	83
BauI	CACGAG	1 cut(s)	829
Bbv12I	GWGCWC	1 cut(s)	404
BbvI	GCAGC	2 cut(s)	479, 501
BccI	CCATC	3 cut(s)	58, 650, 759
BciT130I	CCWGG	1 cut(s)	609
BclI	TGATCA	2 cut(s)	577, 763
BfaI	CTAG	2 cut(s)	396, 477
BfmI	CTRYAG	2 cut(s)	178, 744
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	3 cut(s)	20, 468, 515
BlnI	CCTAGG	1 cut(s)	395
BlsI	GCNGC	3 cut(s)	21, 469, 516
Bme1390I	CCNGG	1 cut(s)	609
BmrFI	CCNGG	1 cut(s)	609
BmrI	ACTGGG	1 cut(s)	251
BmsI	GCATC	2 cut(s)	314, 608
BmtI	GCTAGC	1 cut(s)	480
BmuI	ACTGGG	1 cut(s)	251
BpmI	CTGGAG	1 cut(s)	492
Bpu10I	CCTNAGC	1 cut(s)	518
BpuEI	CTTGAG	1 cut(s)	99
BsaBI	GATNNNNATC	2 cut(s)	423, 768
BsaJI	CCNNGG	9 cut(s)	48, 83, 134, 194, 395, 441, 507, 608, 640
Bsc4I	CCNNNNNNNGG	4 cut(s)	263, 470, 571, 641
Bse1I	ACTGG	4 cut(s)	42, 257, 529, 802
Bse3DI	GCAATG	1 cut(s)	528
Bse8I	GATNNNNATC	2 cut(s)	423, 768
BseBI	CCWGG	1 cut(s)	609
BseDI	CCNNGG	9 cut(s)	48, 83, 134, 194, 395, 441, 507, 608, 640
BseJI	GATNNNNATC	2 cut(s)	423, 768
BseLI	CCNNNNNNNGG	4 cut(s)	263, 470, 571, 641
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	1 cut(s)	259
BseNI	ACTGG	4 cut(s)	42, 257, 529, 802
BseRI	GAGGAG	2 cut(s)	279, 486
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	2 cut(s)	479, 501
BseYI	CCCAGC	1 cut(s)	463
BshFI	GGCC	4 cut(s)	19, 47, 112, 414
BsiHKAI	GWGCWC	1 cut(s)	404
BslFI	GGGAC	2 cut(s)	239, 734
BslI	CCNNNNNNNGG	4 cut(s)	263, 470, 571, 641
BsmFI	GGGAC	2 cut(s)	239, 734
BsnI	GGCC	4 cut(s)	19, 47, 112, 414
Bsp1286I	GDGCHC	2 cut(s)	83, 404
Bsp143I	GATC	6 cut(s)	55, 346, 418, 577, 679, 763
Bsp19I	CCATGG	3 cut(s)	48, 441, 507
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	4 cut(s)	19, 47, 112, 414
BspCNI	CTCAG	1 cut(s)	258
BspHI	TCATGA	3 cut(s)	58, 682, 754
BspOI	GCTAGC	1 cut(s)	480
BsrDI	GCAATG	1 cut(s)	528
BsrI	ACTGG	4 cut(s)	42, 257, 529, 802
BssECI	CCNNGG	9 cut(s)	48, 83, 134, 194, 395, 441, 507, 608, 640
BssMI	GATC	6 cut(s)	55, 346, 418, 577, 679, 763
BssSI	CACGAG	1 cut(s)	829
BssT1I	CCWWGG	8 cut(s)	48, 83, 134, 194, 395, 441, 507, 640
Bst2BI	CACGAG	1 cut(s)	829
Bst2UI	CCWGG	1 cut(s)	609
BstAPI	GCANNNNNTGC	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	79, 478
BstDEI	CTNAG	2 cut(s)	245, 518
BstDSI	CCRYGG	3 cut(s)	48, 441, 507
BstKTI	GATC	6 cut(s)	58, 349, 421, 580, 682, 766
BstMBI	GATC	6 cut(s)	55, 346, 418, 577, 679, 763
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 213, 437, 473
BstNI	CCWGG	1 cut(s)	609
BstNSI	RCATGY	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	607
BstSFI	CTRYAG	2 cut(s)	178, 744
BstSLI	GKGCMC	1 cut(s)	83
BstV1I	GCAGC	2 cut(s)	479, 501
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BsuRI	GGCC	4 cut(s)	19, 47, 112, 414
BtgI	CCRYGG	3 cut(s)	48, 441, 507
BtsI	GCAGTG	1 cut(s)	6
BtsIMutI	CAGTG	1 cut(s)	6
Cac8I	GCNNGC	2 cut(s)	79, 478
CaiI	CAGNNNCTG	1 cut(s)	470
CciI	TCATGA	3 cut(s)	58, 682, 754
Csp6I	GTAC	2 cut(s)	199, 451
CviAII	CATG	8 cut(s)	49, 59, 213, 407, 442, 508, 683, 755
CviQI	GTAC	2 cut(s)	199, 451
DdeI	CTNAG	2 cut(s)	245, 518
DpnI	GATC	6 cut(s)	57, 348, 420, 579, 681, 765
DpnII	GATC	6 cut(s)	55, 346, 418, 577, 679, 763
EaeI	YGGCCR	1 cut(s)	17
Eco130I	CCWWGG	8 cut(s)	48, 83, 134, 194, 395, 441, 507, 640
Eco147I	AGGCCT	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	252
EcoRI	GAATTC	2 cut(s)	547, 626
EcoRII	CCWGG	1 cut(s)	607
EcoT14I	CCWWGG	8 cut(s)	48, 83, 134, 194, 395, 441, 507, 640
EcoT22I	ATGCAT	1 cut(s)	601
ErhI	CCWWGG	8 cut(s)	48, 83, 134, 194, 395, 441, 507, 640
FaeI	CATG	8 cut(s)	52, 62, 216, 410, 445, 511, 686, 758
FalI	AAGNNNNNCTT	2 cut(s)	76, 108
FaqI	GGGAC	2 cut(s)	239, 734
FatI	CATG	8 cut(s)	48, 58, 212, 406, 441, 507, 682, 754
FbaI	TGATCA	2 cut(s)	577, 763
Fnu4HI	GCNGC	3 cut(s)	20, 468, 515
Fsp4HI	GCNGC	3 cut(s)	20, 468, 515
FspBI	CTAG	2 cut(s)	396, 477
GluI	GCNGC	3 cut(s)	20, 468, 515
GsaI	CCCAGC	1 cut(s)	467
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	4 cut(s)	19, 47, 112, 414
Hin1II	CATG	8 cut(s)	52, 62, 216, 410, 445, 511, 686, 758
HphI	GGTGA	1 cut(s)	597
Hpy188I	TCNGA	2 cut(s)	248, 774
Hpy188III	TCNNGA	7 cut(s)	59, 116, 273, 344, 537, 683, 755
HpyAV	CCTTC	4 cut(s)	213, 227, 404, 693
HpyCH4V	TGCA	6 cut(s)	141, 207, 216, 305, 599, 622
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 213, 437, 473
HpyF3I	CTNAG	2 cut(s)	245, 518
Hsp92II	CATG	8 cut(s)	52, 62, 216, 410, 445, 511, 686, 758
Ksp22I	TGATCA	2 cut(s)	577, 763
Kzo9I	GATC	6 cut(s)	55, 346, 418, 577, 679, 763
LmnI	GCTCC	5 cut(s)	399, 445, 473, 499, 511
Lsp1109I	GCAGC	2 cut(s)	479, 501
LweI	GCATC	2 cut(s)	314, 608
MaeI	CTAG	2 cut(s)	396, 477
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	6 cut(s)	57, 348, 420, 579, 681, 765
MboI	GATC	6 cut(s)	55, 346, 418, 577, 679, 763
MboII	GAAGA	1 cut(s)	65
MfeI	CAATTG	1 cut(s)	122
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	2 cut(s)	83, 404
MluCI	AATT	5 cut(s)	122, 127, 142, 547, 626
MmeI	TCCRAC	2 cut(s)	241, 818
MnlI	CCTC	9 cut(s)	123, 194, 257, 260, 377, 496, 507, 533, 818
Mph1103I	ATGCAT	1 cut(s)	601
MseI	TTAA	2 cut(s)	423, 690
MspA1I	CMGCKG	1 cut(s)	470
MspR9I	CCNGG	1 cut(s)	609
MunI	CAATTG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	609
MwoI	GCNNNNNNNGC	4 cut(s)	118, 213, 437, 473
NcoI	CCATGG	3 cut(s)	48, 441, 507
NdeII	GATC	6 cut(s)	55, 346, 418, 577, 679, 763
NheI	GCTAGC	1 cut(s)	476
NlaIII	CATG	8 cut(s)	52, 62, 216, 410, 445, 511, 686, 758
NsiI	ATGCAT	1 cut(s)	601
NspI	RCATGY	1 cut(s)	216
PagI	TCATGA	3 cut(s)	58, 682, 754
PceI	AGGCCT	1 cut(s)	112
PflMI	CCANNNNNTGG	3 cut(s)	470, 571, 641
PkrI	GCNGC	3 cut(s)	21, 469, 516
PshBI	ATTAAT	1 cut(s)	690
Psp6I	CCWGG	1 cut(s)	607
PspFI	CCCAGC	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	607
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	1 cut(s)	418
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	2 cut(s)	200, 452
RsaNI	GTAC	2 cut(s)	199, 451
SaqAI	TTAA	2 cut(s)	423, 690
SatI	GCNGC	3 cut(s)	20, 468, 515
Sau3AI	GATC	6 cut(s)	55, 346, 418, 577, 679, 763
ScrFI	CCNGG	1 cut(s)	609
SduI	GDGCHC	2 cut(s)	83, 404
SfaNI	GCATC	2 cut(s)	314, 608
SfcI	CTRYAG	2 cut(s)	178, 744
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
Sse9I	AATT	5 cut(s)	122, 127, 142, 547, 626
SseBI	AGGCCT	1 cut(s)	112
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	2 cut(s)	396, 477
StuI	AGGCCT	1 cut(s)	112
StyD4I	CCNGG	1 cut(s)	607
StyI	CCWWGG	8 cut(s)	48, 83, 134, 194, 395, 441, 507, 640
TasI	AATT	5 cut(s)	122, 127, 142, 547, 626
TauI	GCSGC	1 cut(s)	22
Tru1I	TTAA	2 cut(s)	423, 690
Tru9I	TTAA	2 cut(s)	423, 690
TscAI	CASTG	1 cut(s)	13
TseI	GCWGC	2 cut(s)	467, 514
TspDTI	ATGAA	3 cut(s)	423, 540, 771
TspRI	CASTG	1 cut(s)	13
Van91I	CCANNNNNTGG	3 cut(s)	470, 571, 641
VspI	ATTAAT	1 cut(s)	690
XapI	RAATTY	2 cut(s)	547, 626
XceI	RCATGY	1 cut(s)	216
XcmI	CCANNNNNNNNNTGG	1 cut(s)	801
XmaJI	CCTAGG	1 cut(s)	395
XspI	CTAG	2 cut(s)	396, 477
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.