Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002079

Physical Location & Seq

Genomic Coordinates Forward (+)

22366665 .. 22367967

Gene Structure 1303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1153300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGATACTGCTCAATGGCTGCAGGGAAGTGGAGAACTTGAGAAGCCCATGGAAGATCATGAGATGGGATCCAATGGATGCACAAGGTCAGTGTTGGAGAAAAGGGCTAGACCTCAAGAGCAATTGAATTGTCCAAGGTGCAGTTCAACCAACACCAAGTTTTGTTACTACAACAACTACAGCCTCACTCAACCAAGGTACTTTTGCAAGACATGCAGAAGGTATTGGACTGAAGGTGGAACTCTCAGAAATGTCCCAGTTGGAGGAGGTTCAAGGAAGAACAAGAAATCCACATCCTCATCGGCTTCAGTATCGTCAAAGATTACTATTCCTGATCTTAACCCACCAACAACCCTTTCACACTTTTCATCATCTCACCAAAACCCTAGGGTTACCCATGAAGGCCAAGATCTTAACCTGACCTTTGATTCTATAGATGCACATTACCATGGTACTACAATGGAAAACAACAACAGTACCAATTCCTCATCAGCTCCTAATCTTTCAGCTATGGAGCTTCTTAGGACTGGCATTGCTTCTAGAGGTGTGAATTCATTCATGCCAACCCAGAATATGCCTGATCATCATTCAAATACAGTACTCTATCCACCATCATCAGTAGGGTTCTCGCTGCAAGAATTCAAACCAACAAGCCTTGGTTTTTGTGTTGATGGGCTTGGAAATAGGTATGGAGGGGATGATCATGAGAATGTTAATGGTGGAAGGATATTGTTTCCATTTGGGGATCATCACTTGAAACAGATTTCAAGCACTGCAGGTCATCATGAAGTACTTGATCATCATCAGAACAAGGGGCAAGGGAACCCAACAGGGTATTGGAATGGTTTATTAGGTGGAGGCTCGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009415 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010029 GO:0010030 GO:0010035 GO:0010114 GO:0010161 GO:0010371 GO:0010372 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0042221 GO:0043455 GO:0045828 GO:0045834 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0090351 GO:0104004 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

290

Amino Acids

31.81

Weight (kDa)

7.25

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	40 - 96	1e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46590 AT2G46590 AT3G61850 AT3G61850 AT3G61850 AT3G61850 AT3G61850
fragaria_vesca	FvH4_7g17000 FvH4_7g17000 FvH4_7g17000 FvH4_7g32170 FvH4_7g32170 FvH4_7g32170
malus_domestica	MD01G1084700.v1.1 MD01G1224500.v1.1 MD07G1153300.v1.1 MD07G1295200.v1.1
prunus_persica	Prupe.2G192300_v2.0.a1 Prupe.2G192300_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1
pyrus_communis	pycom01g23320 pycom07g26780
rosa_chinensis	RchiOBHm_Chr1g0360381 RchiOBHm_Chr1g0381791
rosa_laevigata	RLG00000026205 RLG00000027812
rosa_multiflora	Rmu_sc0008418.1_g000008 Rmu_ssc0000368.1_g000076
rosa_roxburghii	Rroxscaffold_4G00278450 Rroxscaffold_4G00296170
rosa_rugosa	Rorug01G0276400 Rorug01G0276500 Rorug01G0431000
rosa_samantha	Rh1AG290500 Rh1AG454400 Rh1BG255600 Rh1CG273300 Rh1CG426000 Rh1DG285400 Rh1DG443700
rosa_wichuraiana	Rw1G025720 Rw1G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	767
AclWI	GGATC	3 cut(s)	63, 76, 753
AcsI	RAATTY	2 cut(s)	550, 638
AcuI	CTGAAG	2 cut(s)	252, 291
AfaI	GTAC	5 cut(s)	200, 454, 478, 600, 792
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	7 cut(s)	127, 147, 273, 591, 643, 757, 768
AjuI	GAANNNNNNNTTGG	4 cut(s)	127, 159, 340, 372
AloI	GAACNNNNNNTCC	2 cut(s)	272, 304
AluBI	AGCT	3 cut(s)	494, 509, 517
AluI	AGCT	3 cut(s)	494, 509, 517
AlwI	GGATC	3 cut(s)	63, 76, 753
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	2 cut(s)	19, 631
ApoI	RAATTY	2 cut(s)	550, 638
Asp700I	GAANNNNTTC	1 cut(s)	554
AspA2I	CCTAGG	1 cut(s)	386
AsuHPI	GGTGA	1 cut(s)	368
AvrII	CCTAGG	1 cut(s)	386
BaeI	ACNNNNGTAYC	2 cut(s)	460, 493
BamHI	GGATCC	1 cut(s)	68
BauI	CACGAG	1 cut(s)	862
BbvI	GCAGC	2 cut(s)	6, 618
BccI	CCATC	3 cut(s)	58, 619, 665
BclI	TGATCA	3 cut(s)	580, 700, 796
BfaI	CTAG	3 cut(s)	108, 387, 540
BfmI	CTRYAG	4 cut(s)	20, 178, 432, 774
BfuAI	ACCTGC	1 cut(s)	767
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	2 cut(s)	20, 632
BlnI	CCTAGG	1 cut(s)	386
BlsI	GCNGC	2 cut(s)	21, 633
BmcAI	AGTACT	2 cut(s)	600, 792
BmiI	GGNNCC	2 cut(s)	70, 824
BmrI	ACTGGG	1 cut(s)	251
BmsI	GCATC	2 cut(s)	68, 427
BmuI	ACTGGG	1 cut(s)	251
BpuEI	CTTGAG	2 cut(s)	59, 99
BsaBI	GATNNNNATC	1 cut(s)	801
BsaJI	CCNNGG	6 cut(s)	48, 134, 194, 386, 448, 655
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	2 cut(s)	257, 532
Bse3DI	GCAATG	1 cut(s)	531
Bse8I	GATNNNNATC	1 cut(s)	801
BseDI	CCNNGG	6 cut(s)	48, 134, 194, 386, 448, 655
BseGI	GGATG	3 cut(s)	83, 293, 703
BseJI	GATNNNNATC	1 cut(s)	801
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	1 cut(s)	259
BseNI	ACTGG	2 cut(s)	257, 532
BseRI	GAGGAG	1 cut(s)	279
BseXI	GCAGC	2 cut(s)	6, 618
BsgI	GTGCAG	1 cut(s)	160
BshFI	GGCC	1 cut(s)	405
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	405
Bsp143I	GATC	8 cut(s)	55, 68, 334, 409, 580, 700, 745, 796
Bsp19I	CCATGG	2 cut(s)	48, 448
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	1 cut(s)	258
BspHI	TCATGA	3 cut(s)	58, 703, 784
BspLI	GGNNCC	2 cut(s)	70, 824
BspMAI	CTGCAG	2 cut(s)	24, 778
BspMI	ACCTGC	1 cut(s)	767
BspPI	GGATC	3 cut(s)	63, 76, 753
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	2 cut(s)	257, 532
BssECI	CCNNGG	6 cut(s)	48, 134, 194, 386, 448, 655
BssMI	GATC	8 cut(s)	55, 68, 334, 409, 580, 700, 745, 796
BssSI	CACGAG	1 cut(s)	862
BssT1I	CCWWGG	6 cut(s)	48, 134, 194, 386, 448, 655
Bst2BI	CACGAG	1 cut(s)	862
Bst4CI	ACNGT	2 cut(s)	476, 598
BstAPI	GCANNNNNTGC	1 cut(s)	213
BstDEI	CTNAG	2 cut(s)	245, 521
BstDSI	CCRYGG	2 cut(s)	48, 448
BstEII	GGTNACC	1 cut(s)	391
BstF5I	GGATG	3 cut(s)	83, 293, 703
BstKTI	GATC	8 cut(s)	58, 71, 337, 412, 583, 703, 748, 799
BstMBI	GATC	8 cut(s)	55, 68, 334, 409, 580, 700, 745, 796
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BstNSI	RCATGY	1 cut(s)	216
BstPI	GGTNACC	1 cut(s)	391
BstSFI	CTRYAG	4 cut(s)	20, 178, 432, 774
BstV1I	GCAGC	2 cut(s)	6, 618
BstX2I	RGATCY	2 cut(s)	68, 409
BstYI	RGATCY	2 cut(s)	68, 409
BsuRI	GGCC	1 cut(s)	405
BtgI	CCRYGG	2 cut(s)	48, 448
BtsCI	GGATG	3 cut(s)	83, 293, 703
BtsI	GCAGTG	1 cut(s)	771
BtsIMutI	CAGTG	2 cut(s)	96, 771
BveI	ACCTGC	1 cut(s)	767
CciI	TCATGA	3 cut(s)	58, 703, 784
Csp6I	GTAC	5 cut(s)	199, 453, 477, 599, 791
CviAII	CATG	8 cut(s)	49, 59, 213, 398, 449, 559, 704, 785
CviQI	GTAC	5 cut(s)	199, 453, 477, 599, 791
DdeI	CTNAG	2 cut(s)	245, 521
DpnI	GATC	8 cut(s)	57, 70, 336, 411, 582, 702, 747, 798
DpnII	GATC	8 cut(s)	55, 68, 334, 409, 580, 700, 745, 796
Eco130I	CCWWGG	6 cut(s)	48, 134, 194, 386, 448, 655
Eco57I	CTGAAG	2 cut(s)	252, 291
Eco91I	GGTNACC	1 cut(s)	391
EcoO65I	GGTNACC	1 cut(s)	391
EcoRI	GAATTC	2 cut(s)	550, 638
EcoT14I	CCWWGG	6 cut(s)	48, 134, 194, 386, 448, 655
ErhI	CCWWGG	6 cut(s)	48, 134, 194, 386, 448, 655
FaeI	CATG	8 cut(s)	52, 62, 216, 401, 452, 562, 707, 788
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	8 cut(s)	48, 58, 212, 397, 448, 558, 703, 784
FbaI	TGATCA	3 cut(s)	580, 700, 796
Fnu4HI	GCNGC	2 cut(s)	20, 632
FokI	GGATG	3 cut(s)	90, 280, 710
Fsp4HI	GCNGC	2 cut(s)	20, 632
FspBI	CTAG	3 cut(s)	108, 387, 540
GluI	GCNGC	2 cut(s)	20, 632
HaeIII	GGCC	1 cut(s)	405
Hin1II	CATG	8 cut(s)	52, 62, 216, 401, 452, 562, 707, 788
HinfI	GANTC	1 cut(s)	428
HphI	GGTGA	1 cut(s)	368
Hpy188I	TCNGA	2 cut(s)	248, 807
Hpy188III	TCNNGA	6 cut(s)	59, 116, 332, 540, 704, 785
HpyAV	CCTTC	4 cut(s)	213, 227, 395, 717
HpyCH4III	ACNGT	2 cut(s)	476, 598
HpyCH4V	TGCA	8 cut(s)	22, 81, 141, 207, 216, 440, 634, 776
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
HpyF3I	CTNAG	2 cut(s)	245, 521
Hsp92II	CATG	8 cut(s)	52, 62, 216, 401, 452, 562, 707, 788
Ksp22I	TGATCA	3 cut(s)	580, 700, 796
Kzo9I	GATC	8 cut(s)	55, 68, 334, 409, 580, 700, 745, 796
LmnI	GCTCC	2 cut(s)	499, 514
LpnPI	CCDG	9 cut(s)	8, 270, 345, 431, 513, 581, 591, 762, 816
Lsp1109I	GCAGC	2 cut(s)	6, 618
LweI	GCATC	2 cut(s)	68, 427
MaeI	CTAG	3 cut(s)	108, 387, 540
MaeIII	GTNAC	2 cut(s)	164, 391
MalI	GATC	8 cut(s)	57, 70, 336, 411, 582, 702, 747, 798
MboI	GATC	8 cut(s)	55, 68, 334, 409, 580, 700, 745, 796
MboII	GAAGA	2 cut(s)	65, 289
MfeI	CAATTG	1 cut(s)	122
MflI	RGATCY	2 cut(s)	68, 409
MluCI	AATT	5 cut(s)	122, 127, 481, 550, 638
MmeI	TCCRAC	2 cut(s)	75, 241
MnlI	CCTC	9 cut(s)	123, 194, 257, 260, 307, 496, 536, 686, 851
MroXI	GAANNNNTTC	1 cut(s)	554
MseI	TTAA	3 cut(s)	339, 414, 714
MslI	CAYNNNNRTG	2 cut(s)	447, 708
MunI	CAATTG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	213
NcoI	CCATGG	2 cut(s)	48, 448
NdeII	GATC	8 cut(s)	55, 68, 334, 409, 580, 700, 745, 796
NlaIII	CATG	8 cut(s)	52, 62, 216, 401, 452, 562, 707, 788
NlaIV	GGNNCC	2 cut(s)	70, 824
NspI	RCATGY	1 cut(s)	216
PagI	TCATGA	3 cut(s)	58, 703, 784
PdmI	GAANNNNTTC	1 cut(s)	554
PfeI	GAWTC	1 cut(s)	428
PkrI	GCNGC	2 cut(s)	21, 633
PspEI	GGTNACC	1 cut(s)	391
PspN4I	GGNNCC	2 cut(s)	70, 824
PstI	CTGCAG	2 cut(s)	24, 778
PsuI	RGATCY	2 cut(s)	68, 409
RsaI	GTAC	5 cut(s)	200, 454, 478, 600, 792
RsaNI	GTAC	5 cut(s)	199, 453, 477, 599, 791
RseI	CAYNNNNRTG	2 cut(s)	447, 708
SaqAI	TTAA	3 cut(s)	339, 414, 714
SatI	GCNGC	2 cut(s)	20, 632
Sau3AI	GATC	8 cut(s)	55, 68, 334, 409, 580, 700, 745, 796
ScaI	AGTACT	2 cut(s)	600, 792
SfaNI	GCATC	2 cut(s)	68, 427
SfcI	CTRYAG	4 cut(s)	20, 178, 432, 774
SmiMI	CAYNNNNRTG	2 cut(s)	447, 708
SmlI	CTYRAG	2 cut(s)	38, 114
SmoI	CTYRAG	2 cut(s)	38, 114
Sse9I	AATT	5 cut(s)	122, 127, 481, 550, 638
SspMI	CTAG	3 cut(s)	108, 387, 540
StyI	CCWWGG	6 cut(s)	48, 134, 194, 386, 448, 655
TaaI	ACNGT	2 cut(s)	476, 598
TasI	AATT	5 cut(s)	122, 127, 481, 550, 638
TatI	WGTACW	2 cut(s)	598, 790
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	3 cut(s)	339, 414, 714
Tru9I	TTAA	3 cut(s)	339, 414, 714
TscAI	CASTG	2 cut(s)	96, 778
TseI	GCWGC	2 cut(s)	19, 631
TspDTI	ATGAA	5 cut(s)	357, 414, 543, 547, 801
TspRI	CASTG	2 cut(s)	96, 778
XapI	RAATTY	2 cut(s)	550, 638
XbaI	TCTAGA	1 cut(s)	539
XceI	RCATGY	1 cut(s)	216
XcmI	CCANNNNNNNNNTGG	1 cut(s)	834
XmaJI	CCTAGG	1 cut(s)	386
XmnI	GAANNNNTTC	1 cut(s)	554
XspI	CTAG	3 cut(s)	108, 387, 540
ZrmI	AGTACT	2 cut(s)	600, 792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.