Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002079

Physical Location & Seq

Genomic Coordinates Forward (+)

67161540 .. 67162965

Gene Structure 1426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G039660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGACACAGCTCACTGGCCACAGGGGATTGGAGTGGTTAAATCCATGGGAGTTGAAGTTTCTGATTCAAGGCCTATCTTAGAGAGAAGAGGAAGACCTCAGAAGGATCAAGCTTTGAATTGTCCAAGGTGCAACTCAACAACCACTAAATTCTGTTACTATAACAATTACAGTCTCTCTCAGCCAAGGTACTTCTGTAAGACTTGTAGAAGGTATTGGACTGAAGGTGGGTCTTTGAGAAATGTTCCAGTGGGTGGAGGCTCAAGGAAGAATAACAAGAGATCTTCAACTTCATCATCTTCGTCCCCGTCAACTTCCAATTCATCTAAGAAGCTTGCTCATCATGATCTGGTGATGACCCAACAAAGTGCTGATTCTCAAAACCCTAAGATCCACCAAGGTCAAGATCTCAACCTAGCATACCCACCAACATCTGATCAGGACTATGATCATCATAGCATCTTTAACCCTAGCTCTTCTAGAATTAGTACTTCATCCCCTCATAATCTCTCGGCTATGGAGCTCCTCAAGAGTACTGGGATCAATGCATCAAGGGGATTAATGAACTCTTTCATGGCTCCCATATCTGTAGCAGATTCGAATACTATCACGATGTTCTCTACTGGTAATCATGGGTTTCCAAATTTGCAAGAATTTAAGCCAAGGCTCAGTTTCTCTCTTGATGGGTATGAGAGTGGCTATGGAAGTCTTCAAGGCGTTCAAGATGGTACTAGTCATCATCATGCAAGGCTCTTGTTTCCTACTGATCAGGATTTGAAGCAGATTCCAAGCGGTACTACTAATACTACTACAAGCACTGAATTTGAGCAAAATGGAGGGGAAGGAGACCATTCTGGGGTGTATTGGAATGGAATGTTAGGTGGAGGATCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

298

Amino Acids

32.65

Weight (kDa)

8.55

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	36 - 93	6.9e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46590 AT2G46590 AT3G61850 AT3G61850 AT3G61850 AT3G61850 AT3G61850
fragaria_vesca	FvH4_7g17000 FvH4_7g17000 FvH4_7g17000 FvH4_7g32170 FvH4_7g32170 FvH4_7g32170
malus_domestica	MD01G1084700.v1.1 MD01G1224500.v1.1 MD07G1153300.v1.1 MD07G1295200.v1.1
prunus_persica	Prupe.2G192300_v2.0.a1 Prupe.2G192300_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1
pyrus_communis	pycom01g23320 pycom07g26780
rosa_chinensis	RchiOBHm_Chr1g0360381 RchiOBHm_Chr1g0381791
rosa_laevigata	RLG00000026205 RLG00000027812
rosa_multiflora	Rmu_sc0008418.1_g000008 Rmu_ssc0000368.1_g000076
rosa_roxburghii	Rroxscaffold_4G00278450 Rroxscaffold_4G00296170
rosa_rugosa	Rorug01G0276400 Rorug01G0276500 Rorug01G0431000
rosa_samantha	Rh1AG290500 Rh1AG454400 Rh1BG255600 Rh1CG273300 Rh1CG426000 Rh1DG285400 Rh1DG443700
rosa_wichuraiana	Rw1G025720 Rw1G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	254
AciI	CCGC	1 cut(s)	792
AclWI	GGATC	4 cut(s)	114, 385, 548, 895
AcoI	YGGCCR	1 cut(s)	17
AcsI	RAATTY	4 cut(s)	149, 643, 653, 821
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	5 cut(s)	191, 490, 535, 730, 796
AfiI	CCNNNNNNNGG	2 cut(s)	254, 856
AgsI	TTSAA	7 cut(s)	56, 69, 118, 288, 713, 722, 778
AhlI	ACTAGT	1 cut(s)	731
AluBI	AGCT	5 cut(s)	11, 113, 334, 474, 523
AluI	AGCT	5 cut(s)	11, 113, 334, 474, 523
Alw21I	GWGCWC	1 cut(s)	525
Alw26I	GTCTC	2 cut(s)	179, 840
AlwI	GGATC	4 cut(s)	114, 385, 548, 895
AoxI	GGCC	2 cut(s)	17, 71
ApoI	RAATTY	4 cut(s)	149, 643, 653, 821
AseI	ATTAAT	1 cut(s)	560
Asp700I	GAANNNNTTC	1 cut(s)	569
AsuHPI	GGTGA	1 cut(s)	364
AsuII	TTCGAA	1 cut(s)	599
BaeI	ACNNNNGTAYC	2 cut(s)	181, 214
BalI	TGGCCA	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	525
BbsI	GAAGAC	2 cut(s)	100, 701
Bbv12I	GWGCWC	1 cut(s)	525
BccI	CCATC	2 cut(s)	677, 719
BclI	TGATCA	3 cut(s)	436, 448, 766
BcoDI	GTCTC	2 cut(s)	179, 840
BcuI	ACTAGT	1 cut(s)	731
BfaI	CTAG	4 cut(s)	416, 471, 480, 732
BfmI	CTRYAG	1 cut(s)	588
BglII	AGATCT	2 cut(s)	281, 406
BmcAI	AGTACT	2 cut(s)	490, 535
BmiI	GGNNCC	1 cut(s)	579
BmrI	ACTGGG	1 cut(s)	546
BmsI	GCATC	2 cut(s)	468, 557
BmuI	ACTGGG	1 cut(s)	546
BpiI	GAAGAC	2 cut(s)	100, 701
Bpu14I	TTCGAA	1 cut(s)	599
BpuEI	CTTGAG	2 cut(s)	247, 512
BsaI	GGTCTC	1 cut(s)	840
BsaJI	CCNNGG	5 cut(s)	45, 125, 185, 397, 662
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 856
Bse1I	ACTGG	4 cut(s)	20, 248, 541, 628
BseDI	CCNNGG	5 cut(s)	45, 125, 185, 397, 662
BseGI	GGATG	1 cut(s)	494
BseLI	CCNNNNNNNGG	2 cut(s)	254, 856
BseMII	CTCAG	3 cut(s)	113, 194, 682
BseNI	ACTGG	4 cut(s)	20, 248, 541, 628
BseRI	GAGGAG	1 cut(s)	515
BshFI	GGCC	2 cut(s)	19, 73
BsiHKAI	GWGCWC	1 cut(s)	525
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	2 cut(s)	254, 856
BsmAI	GTCTC	2 cut(s)	179, 840
BsmFI	GGGAC	1 cut(s)	289
BsnI	GGCC	2 cut(s)	19, 73
Bso31I	GGTCTC	1 cut(s)	840
Bsp119I	TTCGAA	1 cut(s)	599
Bsp1286I	GDGCHC	1 cut(s)	525
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	1 cut(s)	792
BspANI	GGCC	2 cut(s)	19, 73
BspCNI	CTCAG	3 cut(s)	112, 193, 681
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	579
BspPI	GGATC	4 cut(s)	114, 385, 548, 895
BspQI	GCTCTTC	1 cut(s)	481
BspT104I	TTCGAA	1 cut(s)	599
BspTNI	GGTCTC	1 cut(s)	840
BsrI	ACTGG	4 cut(s)	20, 248, 541, 628
BssECI	CCNNGG	5 cut(s)	45, 125, 185, 397, 662
BssT1I	CCWWGG	5 cut(s)	45, 125, 185, 397, 662
Bst4CI	ACNGT	1 cut(s)	173
Bst6I	CTCTTC	2 cut(s)	82, 481
BstBI	TTCGAA	1 cut(s)	599
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	6 cut(s)	79, 99, 180, 327, 387, 668
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	494
BstMAI	GTCTC	2 cut(s)	179, 840
BstSFI	CTRYAG	1 cut(s)	588
BstV2I	GAAGAC	2 cut(s)	100, 701
BstX2I	RGATCY	3 cut(s)	281, 390, 406
BstYI	RGATCY	3 cut(s)	281, 390, 406
BsuRI	GGCC	2 cut(s)	19, 73
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	494
BtsIMutI	CAGTG	3 cut(s)	13, 255, 816
Cac8I	GCNNGC	1 cut(s)	336
CciI	TCATGA	1 cut(s)	343
Csp6I	GTAC	5 cut(s)	190, 489, 534, 729, 795
CviAII	CATG	6 cut(s)	46, 344, 574, 632, 743, 891
CviQI	GTAC	5 cut(s)	190, 489, 534, 729, 795
DdeI	CTNAG	6 cut(s)	79, 99, 180, 327, 387, 668
EaeI	YGGCCR	1 cut(s)	17
Eam1104I	CTCTTC	2 cut(s)	82, 481
EarI	CTCTTC	2 cut(s)	82, 481
Ecl136II	GAGCTC	1 cut(s)	523
Eco130I	CCWWGG	5 cut(s)	45, 125, 185, 397, 662
Eco147I	AGGCCT	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	525
Eco31I	GGTCTC	1 cut(s)	840
Eco53kI	GAGCTC	1 cut(s)	523
Eco57I	CTGAAG	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	523
EcoT14I	CCWWGG	5 cut(s)	45, 125, 185, 397, 662
EcoT22I	ATGCAT	1 cut(s)	550
EcoT38I	GRGCYC	1 cut(s)	525
ErhI	CCWWGG	5 cut(s)	45, 125, 185, 397, 662
FaeI	CATG	6 cut(s)	49, 347, 577, 635, 746, 894
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	6 cut(s)	45, 343, 573, 631, 742, 890
FbaI	TGATCA	3 cut(s)	436, 448, 766
FokI	GGATG	1 cut(s)	481
FriOI	GRGCYC	1 cut(s)	525
FspBI	CTAG	4 cut(s)	416, 471, 480, 732
HaeIII	GGCC	2 cut(s)	19, 73
Hin1II	CATG	6 cut(s)	49, 347, 577, 635, 746, 894
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HindIII	AAGCTT	2 cut(s)	111, 332
HinfI	GANTC	4 cut(s)	65, 374, 596, 784
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	3 cut(s)	64, 102, 436
Hpy188III	TCNNGA	9 cut(s)	344, 404, 440, 480, 529, 610, 680, 722, 770
Hpy8I	GTNNAC	1 cut(s)	312
HpyAV	CCTTC	4 cut(s)	97, 204, 218, 836
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4V	TGCA	4 cut(s)	132, 548, 649, 746
HpyF3I	CTNAG	6 cut(s)	79, 99, 180, 327, 387, 668
Hsp92II	CATG	6 cut(s)	49, 347, 577, 635, 746, 894
Ksp22I	TGATCA	3 cut(s)	436, 448, 766
LguI	GCTCTTC	1 cut(s)	481
LmnI	GCTCC	3 cut(s)	520, 528, 583
LpnPI	CCDG	8 cut(s)	8, 261, 335, 425, 522, 609, 755, 840
LweI	GCATC	2 cut(s)	468, 557
MaeI	CTAG	4 cut(s)	416, 471, 480, 732
MaeIII	GTNAC	1 cut(s)	155
MboII	GAAGA	7 cut(s)	99, 105, 276, 280, 291, 468, 701
MflI	RGATCY	3 cut(s)	281, 390, 406
MhlI	GDGCHC	1 cut(s)	525
MlsI	TGGCCA	1 cut(s)	19
MluCI	AATT	8 cut(s)	118, 149, 166, 319, 483, 643, 653, 821
MluNI	TGGCCA	1 cut(s)	19
MnlI	CCTC	7 cut(s)	83, 108, 251, 510, 536, 830, 878
Mox20I	TGGCCA	1 cut(s)	19
Mph1103I	ATGCAT	1 cut(s)	550
MroXI	GAANNNNTTC	1 cut(s)	569
MscI	TGGCCA	1 cut(s)	19
MseI	TTAA	4 cut(s)	39, 465, 560, 657
MslI	CAYNNNNRTG	1 cut(s)	741
Msp20I	TGGCCA	1 cut(s)	19
NcoI	CCATGG	1 cut(s)	45
NlaIII	CATG	6 cut(s)	49, 347, 577, 635, 746, 894
NlaIV	GGNNCC	1 cut(s)	579
NmeAIII	GCCGAG	1 cut(s)	491
NsiI	ATGCAT	1 cut(s)	550
NspV	TTCGAA	1 cut(s)	599
PagI	TCATGA	1 cut(s)	343
PceI	AGGCCT	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	481
PdmI	GAANNNNTTC	1 cut(s)	569
PfeI	GAWTC	4 cut(s)	65, 374, 596, 784
PflMI	CCANNNNNTGG	1 cut(s)	254
PshBI	ATTAAT	1 cut(s)	560
Psp124BI	GAGCTC	1 cut(s)	525
PspN4I	GGNNCC	1 cut(s)	579
PsuI	RGATCY	3 cut(s)	281, 390, 406
RsaI	GTAC	5 cut(s)	191, 490, 535, 730, 796
RsaNI	GTAC	5 cut(s)	190, 489, 534, 729, 795
RseI	CAYNNNNRTG	1 cut(s)	741
SacI	GAGCTC	1 cut(s)	525
SapI	GCTCTTC	1 cut(s)	481
SaqAI	TTAA	4 cut(s)	39, 465, 560, 657
ScaI	AGTACT	2 cut(s)	490, 535
SduI	GDGCHC	1 cut(s)	525
SfaNI	GCATC	2 cut(s)	468, 557
SfcI	CTRYAG	1 cut(s)	588
SfuI	TTCGAA	1 cut(s)	599
SmiMI	CAYNNNNRTG	1 cut(s)	741
SmlI	CTYRAG	2 cut(s)	262, 527
SmoI	CTYRAG	2 cut(s)	262, 527
SpeI	ACTAGT	1 cut(s)	731
Sse9I	AATT	8 cut(s)	118, 149, 166, 319, 483, 643, 653, 821
SseBI	AGGCCT	1 cut(s)	73
SsiI	CCGC	1 cut(s)	792
SspMI	CTAG	4 cut(s)	416, 471, 480, 732
SstI	GAGCTC	1 cut(s)	525
StuI	AGGCCT	1 cut(s)	73
StyI	CCWWGG	5 cut(s)	45, 125, 185, 397, 662
TaaI	ACNGT	1 cut(s)	173
TaqI	TCGA	1 cut(s)	599
TasI	AATT	8 cut(s)	118, 149, 166, 319, 483, 643, 653, 821
TatI	WGTACW	2 cut(s)	488, 533
TfiI	GAWTC	4 cut(s)	65, 374, 596, 784
Tru1I	TTAA	4 cut(s)	39, 465, 560, 657
Tru9I	TTAA	4 cut(s)	39, 465, 560, 657
TscAI	CASTG	3 cut(s)	20, 255, 823
TspDTI	ATGAA	5 cut(s)	282, 312, 483, 562, 578
TspRI	CASTG	3 cut(s)	20, 255, 823
Van91I	CCANNNNNTGG	1 cut(s)	254
VspI	ATTAAT	1 cut(s)	560
XapI	RAATTY	4 cut(s)	149, 643, 653, 821
XbaI	TCTAGA	1 cut(s)	479
XmnI	GAANNNNTTC	1 cut(s)	569
XspI	CTAG	4 cut(s)	416, 471, 480, 732
ZrmI	AGTACT	2 cut(s)	490, 535
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.