Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002079

Physical Location & Seq

Genomic Coordinates Forward (+)

19126080 .. 19127626

Gene Structure 1547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1084700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGATACTGCTCAATGGCTGCAGGGAAGTGGAGAACCGGAGAAGCCCATGGAAGATCATGATATGGGATCCAATGGATGCACAAGGTCAGTGTTGGAGAAAAGGGCAAGACCTCAAGAGCAATTGAATTGTCCAAGGTGCAATTCAACCAACACCAAGTTTTGTTACTACAACAACTACAGCCTCACTCAACCAAGGTACTTTTGCAAGACATGCAGAAGGTATTGGACTGAAGGTGGAACTCTCAGAAATGTCCCAGTTGGAGGAGGTTCAAGGAAGAACAAGAAATCCACATCCTCATCGGTATCGTCAAAGATTACTATTCCTGATCTTAACCCACCAACAACTCTTTCACACTTTTCATCATCTCACCAAAACCCTAGGGTTACCCATGAAGGCCAAGATCTTAACCTAGGTTTTAATGCTATAGATGCACATTACCATGGTACTACAATGGAAAACAACAATAGTACTAATTCCTCATCAACTCCTAATCTTTCAGCTATGGAGCTTCTTAGGACTGGCATTGCTTCTAGAGGTGTGAATTCATACATACCAACCCAGAATATGCCTGATCATCATTCAAACACACTCTATCCACCATCATCAGCTGGGTTCTCACTACAAGAATACAAACCAACAAACCTTGGTTTTTGTGTTGATGGGCTTGGAAATAGGTATGGGGGGGATGATCATGGGACTGTTAATGGTGGAAGGATCTTGTTTCCATTTGGGGATCATCATTTGAAACAGATTTCAAGCACTGCAGCTCATCATGAAGTACTTGATCATCATCAGAACAAGGGGCAAGGGAATCCAACTGGGTATTGGAATGGTTTATTAGGTGGAGGCTCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009415 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010029 GO:0010030 GO:0010035 GO:0010114 GO:0010161 GO:0010371 GO:0010372 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0042221 GO:0043455 GO:0045828 GO:0045834 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0090351 GO:0104004 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

287

Amino Acids

31.46

Weight (kDa)

8.15

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	40 - 96	6.6e-34	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46590 AT2G46590 AT3G61850 AT3G61850 AT3G61850 AT3G61850 AT3G61850
fragaria_vesca	FvH4_7g17000 FvH4_7g17000 FvH4_7g17000 FvH4_7g32170 FvH4_7g32170 FvH4_7g32170
malus_domestica	MD01G1084700.v1.1 MD01G1224500.v1.1 MD07G1153300.v1.1 MD07G1295200.v1.1
prunus_persica	Prupe.2G192300_v2.0.a1 Prupe.2G192300_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1
pyrus_communis	pycom01g23320 pycom07g26780
rosa_chinensis	RchiOBHm_Chr1g0360381 RchiOBHm_Chr1g0381791
rosa_laevigata	RLG00000026205 RLG00000027812
rosa_multiflora	Rmu_sc0008418.1_g000008 Rmu_ssc0000368.1_g000076
rosa_roxburghii	Rroxscaffold_4G00278450 Rroxscaffold_4G00296170
rosa_rugosa	Rorug01G0276400 Rorug01G0276500 Rorug01G0431000
rosa_samantha	Rh1AG290500 Rh1AG454400 Rh1BG255600 Rh1CG273300 Rh1CG426000 Rh1DG285400 Rh1DG443700
rosa_wichuraiana	Rw1G025720 Rw1G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	63, 76, 725, 744
AcsI	RAATTY	1 cut(s)	544
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	4 cut(s)	200, 448, 472, 783
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	6 cut(s)	127, 147, 273, 585, 748, 759
AjuI	GAANNNNNNNTTGG	4 cut(s)	127, 159, 334, 366
AloI	GAACNNNNNNTCC	2 cut(s)	272, 304
AluBI	AGCT	4 cut(s)	503, 511, 611, 770
AluI	AGCT	4 cut(s)	503, 511, 611, 770
AlwI	GGATC	4 cut(s)	63, 76, 725, 744
AoxI	GGCC	1 cut(s)	397
ApeKI	GCWGC	2 cut(s)	19, 767
ApoI	RAATTY	1 cut(s)	544
AspA2I	CCTAGG	2 cut(s)	380, 412
AsuHPI	GGTGA	1 cut(s)	362
AvrII	CCTAGG	2 cut(s)	380, 412
BamHI	GGATCC	1 cut(s)	68
BbvI	GCAGC	2 cut(s)	6, 779
BccI	CCATC	2 cut(s)	610, 656
BclI	TGATCA	3 cut(s)	574, 691, 787
BfaI	CTAG	3 cut(s)	381, 413, 534
BfmI	CTRYAG	4 cut(s)	20, 178, 426, 765
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	2 cut(s)	20, 768
BlnI	CCTAGG	2 cut(s)	380, 412
BlsI	GCNGC	2 cut(s)	21, 769
BmcAI	AGTACT	2 cut(s)	472, 783
BmiI	GGNNCC	1 cut(s)	70
BmrI	ACTGGG	2 cut(s)	251, 831
BmsI	GCATC	2 cut(s)	68, 421
BmuI	ACTGGG	2 cut(s)	251, 831
BpuEI	CTTGAG	1 cut(s)	99
BsaBI	GATNNNNATC	1 cut(s)	792
BsaJI	CCNNGG	7 cut(s)	48, 134, 194, 380, 412, 442, 646
BsaWI	WCCGGW	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	3 cut(s)	257, 526, 826
Bse3DI	GCAATG	1 cut(s)	525
Bse8I	GATNNNNATC	1 cut(s)	792
BseDI	CCNNGG	7 cut(s)	48, 134, 194, 380, 412, 442, 646
BseGI	GGATG	3 cut(s)	83, 293, 694
BseJI	GATNNNNATC	1 cut(s)	792
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	525
BseMII	CTCAG	1 cut(s)	259
BseNI	ACTGG	3 cut(s)	257, 526, 826
BseRI	GAGGAG	1 cut(s)	279
BseXI	GCAGC	2 cut(s)	6, 779
BseYI	CCCAGC	1 cut(s)	611
BshFI	GGCC	1 cut(s)	399
BsiSI	CCGG	1 cut(s)	38
BslFI	GGGAC	2 cut(s)	239, 712
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmFI	GGGAC	2 cut(s)	239, 712
BsnI	GGCC	1 cut(s)	399
Bsp143I	GATC	9 cut(s)	55, 68, 328, 403, 574, 691, 717, 736, 787
Bsp19I	CCATGG	2 cut(s)	48, 442
BspANI	GGCC	1 cut(s)	399
BspCNI	CTCAG	1 cut(s)	258
BspHI	TCATGA	2 cut(s)	58, 775
BspLI	GGNNCC	1 cut(s)	70
BspMAI	CTGCAG	2 cut(s)	24, 769
BspPI	GGATC	4 cut(s)	63, 76, 725, 744
BsrDI	GCAATG	1 cut(s)	525
BsrI	ACTGG	3 cut(s)	257, 526, 826
BssECI	CCNNGG	7 cut(s)	48, 134, 194, 380, 412, 442, 646
BssMI	GATC	9 cut(s)	55, 68, 328, 403, 574, 691, 717, 736, 787
BssT1I	CCWWGG	7 cut(s)	48, 134, 194, 380, 412, 442, 646
Bst4CI	ACNGT	1 cut(s)	703
BstAPI	GCANNNNNTGC	1 cut(s)	213
BstDEI	CTNAG	2 cut(s)	245, 515
BstDSI	CCRYGG	2 cut(s)	48, 442
BstEII	GGTNACC	1 cut(s)	385
BstF5I	GGATG	3 cut(s)	83, 293, 694
BstKTI	GATC	9 cut(s)	58, 71, 331, 406, 577, 694, 720, 739, 790
BstMBI	GATC	9 cut(s)	55, 68, 328, 403, 574, 691, 717, 736, 787
BstMWI	GCNNNNNNNGC	2 cut(s)	213, 431
BstNSI	RCATGY	1 cut(s)	216
BstPI	GGTNACC	1 cut(s)	385
BstSFI	CTRYAG	4 cut(s)	20, 178, 426, 765
BstV1I	GCAGC	2 cut(s)	6, 779
BstX2I	RGATCY	3 cut(s)	68, 403, 717
BstYI	RGATCY	3 cut(s)	68, 403, 717
BsuRI	GGCC	1 cut(s)	399
BtgI	CCRYGG	2 cut(s)	48, 442
BtsCI	GGATG	3 cut(s)	83, 293, 694
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	2 cut(s)	96, 762
CciI	TCATGA	2 cut(s)	58, 775
Csp6I	GTAC	4 cut(s)	199, 447, 471, 782
CviAII	CATG	8 cut(s)	49, 59, 213, 392, 443, 695, 776, 855
CviQI	GTAC	4 cut(s)	199, 447, 471, 782
DdeI	CTNAG	2 cut(s)	245, 515
DpnI	GATC	9 cut(s)	57, 70, 330, 405, 576, 693, 719, 738, 789
DpnII	GATC	9 cut(s)	55, 68, 328, 403, 574, 691, 717, 736, 787
Eco130I	CCWWGG	7 cut(s)	48, 134, 194, 380, 412, 442, 646
Eco57I	CTGAAG	1 cut(s)	252
Eco91I	GGTNACC	1 cut(s)	385
EcoO65I	GGTNACC	1 cut(s)	385
EcoRI	GAATTC	1 cut(s)	544
EcoT14I	CCWWGG	7 cut(s)	48, 134, 194, 380, 412, 442, 646
ErhI	CCWWGG	7 cut(s)	48, 134, 194, 380, 412, 442, 646
FaeI	CATG	8 cut(s)	52, 62, 216, 395, 446, 698, 779, 858
FaqI	GGGAC	2 cut(s)	239, 712
FatI	CATG	8 cut(s)	48, 58, 212, 391, 442, 694, 775, 854
FbaI	TGATCA	3 cut(s)	574, 691, 787
Fnu4HI	GCNGC	2 cut(s)	20, 768
FokI	GGATG	3 cut(s)	90, 280, 701
Fsp4HI	GCNGC	2 cut(s)	20, 768
FspBI	CTAG	3 cut(s)	381, 413, 534
GluI	GCNGC	2 cut(s)	20, 768
GsaI	CCCAGC	1 cut(s)	615
HaeIII	GGCC	1 cut(s)	399
HapII	CCGG	1 cut(s)	38
Hin1II	CATG	8 cut(s)	52, 62, 216, 395, 446, 698, 779, 858
HinfI	GANTC	1 cut(s)	814
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	1 cut(s)	362
Hpy188I	TCNGA	2 cut(s)	248, 798
Hpy188III	TCNNGA	5 cut(s)	59, 116, 326, 534, 776
HpyAV	CCTTC	4 cut(s)	213, 227, 389, 708
HpyCH4III	ACNGT	1 cut(s)	703
HpyCH4V	TGCA	7 cut(s)	22, 81, 141, 207, 216, 434, 767
HpyF10VI	GCNNNNNNNGC	2 cut(s)	213, 431
HpyF3I	CTNAG	2 cut(s)	245, 515
Hsp92II	CATG	8 cut(s)	52, 62, 216, 395, 446, 698, 779, 858
Ksp22I	TGATCA	3 cut(s)	574, 691, 787
Kzo9I	GATC	9 cut(s)	55, 68, 328, 403, 574, 691, 717, 736, 787
LmnI	GCTCC	1 cut(s)	508
LpnPI	CCDG	9 cut(s)	8, 51, 270, 339, 507, 575, 585, 597, 807
Lsp1109I	GCAGC	2 cut(s)	6, 779
LweI	GCATC	2 cut(s)	68, 421
MaeI	CTAG	3 cut(s)	381, 413, 534
MaeIII	GTNAC	2 cut(s)	164, 385
MalI	GATC	9 cut(s)	57, 70, 330, 405, 576, 693, 719, 738, 789
MboI	GATC	9 cut(s)	55, 68, 328, 403, 574, 691, 717, 736, 787
MboII	GAAGA	2 cut(s)	65, 289
MfeI	CAATTG	1 cut(s)	122
MflI	RGATCY	3 cut(s)	68, 403, 717
MluCI	AATT	5 cut(s)	122, 127, 142, 475, 544
MmeI	TCCRAC	3 cut(s)	75, 241, 842
MnlI	CCTC	8 cut(s)	123, 194, 257, 260, 307, 490, 530, 842
MseI	TTAA	4 cut(s)	333, 408, 420, 705
MslI	CAYNNNNRTG	1 cut(s)	441
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	1 cut(s)	38
MunI	CAATTG	1 cut(s)	122
MwoI	GCNNNNNNNGC	2 cut(s)	213, 431
NcoI	CCATGG	2 cut(s)	48, 442
NdeII	GATC	9 cut(s)	55, 68, 328, 403, 574, 691, 717, 736, 787
NlaIII	CATG	8 cut(s)	52, 62, 216, 395, 446, 698, 779, 858
NlaIV	GGNNCC	1 cut(s)	70
NspI	RCATGY	1 cut(s)	216
PagI	TCATGA	2 cut(s)	58, 775
PfeI	GAWTC	1 cut(s)	814
PkrI	GCNGC	2 cut(s)	21, 769
PspEI	GGTNACC	1 cut(s)	385
PspFI	CCCAGC	1 cut(s)	611
PspN4I	GGNNCC	1 cut(s)	70
PstI	CTGCAG	2 cut(s)	24, 769
PsuI	RGATCY	3 cut(s)	68, 403, 717
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	4 cut(s)	200, 448, 472, 783
RsaNI	GTAC	4 cut(s)	199, 447, 471, 782
RseI	CAYNNNNRTG	1 cut(s)	441
SaqAI	TTAA	4 cut(s)	333, 408, 420, 705
SatI	GCNGC	2 cut(s)	20, 768
Sau3AI	GATC	9 cut(s)	55, 68, 328, 403, 574, 691, 717, 736, 787
ScaI	AGTACT	2 cut(s)	472, 783
SfaNI	GCATC	2 cut(s)	68, 421
SfcI	CTRYAG	4 cut(s)	20, 178, 426, 765
SmiMI	CAYNNNNRTG	1 cut(s)	441
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
Sse9I	AATT	5 cut(s)	122, 127, 142, 475, 544
SspMI	CTAG	3 cut(s)	381, 413, 534
StyI	CCWWGG	7 cut(s)	48, 134, 194, 380, 412, 442, 646
TaaI	ACNGT	1 cut(s)	703
TasI	AATT	5 cut(s)	122, 127, 142, 475, 544
TatI	WGTACW	2 cut(s)	470, 781
TfiI	GAWTC	1 cut(s)	814
Tru1I	TTAA	4 cut(s)	333, 408, 420, 705
Tru9I	TTAA	4 cut(s)	333, 408, 420, 705
TscAI	CASTG	2 cut(s)	96, 769
TseI	GCWGC	2 cut(s)	19, 767
TspDTI	ATGAA	4 cut(s)	351, 408, 537, 792
TspRI	CASTG	2 cut(s)	96, 769
XapI	RAATTY	1 cut(s)	544
XbaI	TCTAGA	1 cut(s)	533
XceI	RCATGY	1 cut(s)	216
XcmI	CCANNNNNNNNNTGG	1 cut(s)	825
XmaJI	CCTAGG	2 cut(s)	380, 412
XspI	CTAG	3 cut(s)	381, 413, 534
ZrmI	AGTACT	2 cut(s)	472, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.