Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002079

Physical Location & Seq

Genomic Coordinates Forward (+)

29596512 .. 29598971

Gene Structure 2460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G314800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGACACAGCTCACTGGCCACAGGGGTTTGGAGTGGTTAAATCCATGGAAGATTCTTCTCCTTCAAGGCCCATCTTAGAGAGAAGGGCAAGGCCTCAAAAGGATCAAGCTTTGAATTGTCCAAGGTGCAATTCAACCACCACTAAATTCTGCTATTACAACAATTATAGTCTCTCTCAGCCAAGATATTTTTGCAAGACTTGTAGAAGGTATTGGACTGAAGGCGGCTCTCTAAGAAATGTTCCTGTGGGTGGAGGCTCAAGGAAGAATAATAAGAGATCGAATTCATCTTCACCGTCAACCTCTTCAGCAAAGAAGGTTGCTCATGATCATCATAATCATGTCACCACCAATACCCCACATGGCAATTTCCCTCAGCACCACGACTCTGCGTCTCAAAACCCTAAGATCCATTTCCAAGGCCAAGATCTCAACTTAGCATACCCACCAACTGATCAGGAATATGATCAGGTACTACCCTTTAGTATTGACAACAAAAGCCAGCACCAGCTGAACCCTAGCTCTTCTACCACGACTTCATCTCATCATCATCATTTGTCAGCTATGGAGCTGCTCAAGACTGGGATTGCATCAAGGGGGTTGGCCTCTTTCATGCCCATGGGTGTGCCTGATCATTCGAATAATAATAATAATAATAATATTACAATGTTTTCTACTGGGTTTCCCATGGGTGTGCAGGAATTCAAGCCAAGTCATGGGCTGAGTTTTTCTCTAGATGGGTTCGAGAGTAGCGGGTACGGATGTCTTCAAGGGGTGCAAGAGGCAAACAATAGTCATGCAAGGCTCTTGTTTCCTACAGATGAGGATTTGAAGCAGCAGATTCCAAGCACCACTACTATCACCACTGAATTTGATCAGCACACCAGAGGGGAAGGGGATTCTGGTGGGTATTGGAACGGAATGTTAGGTGGAGGTTCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

315

Amino Acids

34.78

Weight (kDa)

7.76

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46590 AT2G46590 AT3G61850 AT3G61850 AT3G61850 AT3G61850 AT3G61850
fragaria_vesca	FvH4_7g17000 FvH4_7g17000 FvH4_7g17000 FvH4_7g32170 FvH4_7g32170 FvH4_7g32170
malus_domestica	MD01G1084700.v1.1 MD01G1224500.v1.1 MD07G1153300.v1.1 MD07G1295200.v1.1
prunus_persica	Prupe.2G192300_v2.0.a1 Prupe.2G192300_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1
pyrus_communis	pycom01g23320 pycom07g26780
rosa_chinensis	RchiOBHm_Chr1g0360381 RchiOBHm_Chr1g0381791
rosa_laevigata	RLG00000026205 RLG00000027812
rosa_multiflora	Rmu_sc0008418.1_g000008 Rmu_ssc0000368.1_g000076
rosa_roxburghii	Rroxscaffold_4G00278450 Rroxscaffold_4G00296170
rosa_rugosa	Rorug01G0276400 Rorug01G0276500 Rorug01G0431000
rosa_samantha	Rh1AG290500 Rh1AG454400 Rh1BG255600 Rh1CG273300 Rh1CG426000 Rh1DG285400 Rh1DG443700
rosa_wichuraiana	Rw1G025720 Rw1G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	716
AciI	CCGC	2 cut(s)	225, 753
AclWI	GGATC	2 cut(s)	111, 403
AcoI	YGGCCR	1 cut(s)	17
AcsI	RAATTY	4 cut(s)	146, 283, 701, 869
AcuI	CTGAAG	2 cut(s)	240, 291
AfaI	GTAC	2 cut(s)	474, 758
AfiI	CCNNNNNNNGG	2 cut(s)	251, 716
AgsI	TTSAA	6 cut(s)	66, 115, 135, 706, 770, 832
AhdI	GACNNNNNGTC	1 cut(s)	391
AjuI	GAANNNNNNNTTGG	2 cut(s)	115, 147
AluBI	AGCT	6 cut(s)	11, 110, 511, 522, 563, 571
AluI	AGCT	6 cut(s)	11, 110, 511, 522, 563, 571
Alw26I	GTCTC	2 cut(s)	176, 399
AlwI	GGATC	2 cut(s)	111, 403
AoxI	GGCC	5 cut(s)	17, 68, 92, 421, 603
ApeKI	GCWGC	2 cut(s)	571, 835
ApoI	RAATTY	4 cut(s)	146, 283, 701, 869
AspS9I	GGNCC	1 cut(s)	69
AsuHPI	GGTGA	3 cut(s)	285, 337, 853
AsuII	TTCGAA	1 cut(s)	638
BaeI	ACNNNNGTAYC	2 cut(s)	748, 781
BalI	TGGCCA	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	758
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	2 cut(s)	558, 847
BccI	CCATC	2 cut(s)	80, 731
BclI	TGATCA	5 cut(s)	328, 454, 466, 631, 874
BcoDI	GTCTC	2 cut(s)	176, 399
BfaI	CTAG	2 cut(s)	519, 734
BfmI	CTRYAG	1 cut(s)	816
BglII	AGATCT	1 cut(s)	427
BisI	GCNGC	3 cut(s)	226, 572, 836
BlsI	GCNGC	3 cut(s)	227, 573, 837
BmeRI	GACNNNNNGTC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	69
BmrI	ACTGGG	2 cut(s)	591, 687
BmsI	GCATC	1 cut(s)	599
BmuI	ACTGGG	2 cut(s)	591, 687
BpiI	GAAGAC	1 cut(s)	758
BplI	GAGNNNNNCTC	2 cut(s)	715, 747
Bpu10I	CCTNAGC	1 cut(s)	375
Bpu14I	TTCGAA	1 cut(s)	638
BpuEI	CTTGAG	2 cut(s)	244, 560
BsaJI	CCNNGG	5 cut(s)	45, 122, 418, 618, 687
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 716
Bse1I	ACTGG	3 cut(s)	20, 586, 682
BseDI	CCNNGG	5 cut(s)	45, 122, 418, 618, 687
BseGI	GGATG	1 cut(s)	767
BseLI	CCNNNNNNNGG	2 cut(s)	251, 716
BseMII	CTCAG	3 cut(s)	191, 389, 713
BseNI	ACTGG	3 cut(s)	20, 586, 682
BseXI	GCAGC	2 cut(s)	558, 847
BsgI	GTGCAG	1 cut(s)	716
BshFI	GGCC	5 cut(s)	19, 70, 94, 423, 605
BslI	CCNNNNNNNGG	2 cut(s)	251, 716
BsmAI	GTCTC	2 cut(s)	176, 399
BsmBI	CGTCTC	1 cut(s)	399
BsnI	GGCC	5 cut(s)	19, 70, 94, 423, 605
Bsp119I	TTCGAA	1 cut(s)	638
Bsp143I	GATC	9 cut(s)	103, 278, 328, 408, 427, 454, 466, 631, 874
Bsp19I	CCATGG	3 cut(s)	45, 618, 687
BspACI	CCGC	2 cut(s)	225, 753
BspANI	GGCC	5 cut(s)	19, 70, 94, 423, 605
BspCNI	CTCAG	3 cut(s)	190, 388, 714
BspHI	TCATGA	1 cut(s)	325
BspPI	GGATC	2 cut(s)	111, 403
BspQI	GCTCTTC	1 cut(s)	529
BspT104I	TTCGAA	1 cut(s)	638
BsrI	ACTGG	3 cut(s)	20, 586, 682
BssECI	CCNNGG	5 cut(s)	45, 122, 418, 618, 687
BssMI	GATC	9 cut(s)	103, 278, 328, 408, 427, 454, 466, 631, 874
BssT1I	CCWWGG	5 cut(s)	45, 122, 418, 618, 687
Bst4CI	ACNGT	1 cut(s)	297
Bst6I	CTCTTC	2 cut(s)	310, 529
BstBI	TTCGAA	1 cut(s)	638
BstC8I	GCNNGC	1 cut(s)	503
BstDEI	CTNAG	7 cut(s)	76, 177, 233, 375, 405, 436, 722
BstDSI	CCRYGG	3 cut(s)	45, 618, 687
BstF5I	GGATG	1 cut(s)	767
BstKTI	GATC	9 cut(s)	106, 281, 331, 411, 430, 457, 469, 634, 877
BstMAI	GTCTC	2 cut(s)	176, 399
BstMBI	GATC	9 cut(s)	103, 278, 328, 408, 427, 454, 466, 631, 874
BstSFI	CTRYAG	1 cut(s)	816
BstV1I	GCAGC	2 cut(s)	558, 847
BstV2I	GAAGAC	1 cut(s)	758
BstX2I	RGATCY	2 cut(s)	408, 427
BstYI	RGATCY	2 cut(s)	408, 427
BsuRI	GGCC	5 cut(s)	19, 70, 94, 423, 605
BtgI	CCRYGG	3 cut(s)	45, 618, 687
BtsCI	GGATG	1 cut(s)	767
BtsIMutI	CAGTG	2 cut(s)	13, 864
Cac8I	GCNNGC	1 cut(s)	503
CciI	TCATGA	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	69
CseI	GACGC	1 cut(s)	381
Csp6I	GTAC	2 cut(s)	473, 757
CspCI	CAANNNNNGTGG	2 cut(s)	853, 888
CviQI	GTAC	2 cut(s)	473, 757
DdeI	CTNAG	7 cut(s)	76, 177, 233, 375, 405, 436, 722
DpnI	GATC	9 cut(s)	105, 280, 330, 410, 429, 456, 468, 633, 876
DpnII	GATC	9 cut(s)	103, 278, 328, 408, 427, 454, 466, 631, 874
DriI	GACNNNNNGTC	1 cut(s)	391
EaeI	YGGCCR	1 cut(s)	17
Eam1104I	CTCTTC	2 cut(s)	310, 529
Eam1105I	GACNNNNNGTC	1 cut(s)	391
EarI	CTCTTC	2 cut(s)	310, 529
Eco130I	CCWWGG	5 cut(s)	45, 122, 418, 618, 687
Eco147I	AGGCCT	1 cut(s)	94
Eco57I	CTGAAG	2 cut(s)	240, 291
EcoRI	GAATTC	2 cut(s)	283, 701
EcoT14I	CCWWGG	5 cut(s)	45, 122, 418, 618, 687
ErhI	CCWWGG	5 cut(s)	45, 122, 418, 618, 687
Esp3I	CGTCTC	1 cut(s)	399
FauI	CCCGC	1 cut(s)	746
FbaI	TGATCA	5 cut(s)	328, 454, 466, 631, 874
Fnu4HI	GCNGC	3 cut(s)	226, 572, 836
FokI	GGATG	1 cut(s)	774
Fsp4HI	GCNGC	3 cut(s)	226, 572, 836
FspBI	CTAG	2 cut(s)	519, 734
GluI	GCNGC	3 cut(s)	226, 572, 836
HaeIII	GGCC	5 cut(s)	19, 70, 94, 423, 605
HgaI	GACGC	1 cut(s)	381
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	4 cut(s)	53, 386, 841, 899
HphI	GGTGA	3 cut(s)	285, 337, 853
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188III	TCNNGA	5 cut(s)	326, 458, 577, 734, 745
Hpy8I	GTNNAC	1 cut(s)	300
HpyAV	CCTTC	6 cut(s)	72, 78, 201, 215, 310, 887
HpyCH4III	ACNGT	1 cut(s)	297
HpyCH4V	TGCA	6 cut(s)	129, 195, 590, 697, 778, 800
HpyF3I	CTNAG	7 cut(s)	76, 177, 233, 375, 405, 436, 722
Ksp22I	TGATCA	5 cut(s)	328, 454, 466, 631, 874
Kzo9I	GATC	9 cut(s)	103, 278, 328, 408, 427, 454, 466, 631, 874
LguI	GCTCTTC	1 cut(s)	529
LmnI	GCTCC	1 cut(s)	568
Lsp1109I	GCAGC	2 cut(s)	558, 847
LweI	GCATC	1 cut(s)	599
MaeI	CTAG	2 cut(s)	519, 734
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	9 cut(s)	105, 280, 330, 410, 429, 456, 468, 633, 876
MboI	GATC	9 cut(s)	103, 278, 328, 408, 427, 454, 466, 631, 874
MboII	GAAGA	7 cut(s)	48, 62, 277, 282, 297, 516, 758
MflI	RGATCY	2 cut(s)	408, 427
MlsI	TGGCCA	1 cut(s)	19
MluCI	AATT	8 cut(s)	115, 130, 146, 163, 283, 367, 701, 869
MluNI	TGGCCA	1 cut(s)	19
MlyI	GAGTC	1 cut(s)	380
MnlI	CCTC	9 cut(s)	105, 248, 313, 384, 616, 775, 817, 881, 926
Mox20I	TGGCCA	1 cut(s)	19
MscI	TGGCCA	1 cut(s)	19
MseI	TTAA	1 cut(s)	39
MslI	CAYNNNNRTG	4 cut(s)	339, 617, 623, 692
Msp20I	TGGCCA	1 cut(s)	19
MspA1I	CMGCKG	1 cut(s)	511
NcoI	CCATGG	3 cut(s)	45, 618, 687
NdeII	GATC	9 cut(s)	103, 278, 328, 408, 427, 454, 466, 631, 874
NmuCI	GTSAC	1 cut(s)	343
NspV	TTCGAA	1 cut(s)	638
PagI	TCATGA	1 cut(s)	325
PceI	AGGCCT	1 cut(s)	94
PciSI	GCTCTTC	1 cut(s)	529
PfeI	GAWTC	3 cut(s)	53, 841, 899
PflMI	CCANNNNNTGG	1 cut(s)	716
PkrI	GCNGC	3 cut(s)	227, 573, 837
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
PspPI	GGNCC	1 cut(s)	69
PsuI	RGATCY	2 cut(s)	408, 427
PvuII	CAGCTG	1 cut(s)	511
RsaI	GTAC	2 cut(s)	474, 758
RsaNI	GTAC	2 cut(s)	473, 757
RseI	CAYNNNNRTG	4 cut(s)	339, 617, 623, 692
SapI	GCTCTTC	1 cut(s)	529
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	3 cut(s)	226, 572, 836
Sau3AI	GATC	9 cut(s)	103, 278, 328, 408, 427, 454, 466, 631, 874
Sau96I	GGNCC	1 cut(s)	69
SchI	GAGTC	1 cut(s)	380
SfaNI	GCATC	1 cut(s)	599
SfcI	CTRYAG	1 cut(s)	816
SfuI	TTCGAA	1 cut(s)	638
SmiMI	CAYNNNNRTG	4 cut(s)	339, 617, 623, 692
SmlI	CTYRAG	2 cut(s)	259, 575
SmoI	CTYRAG	2 cut(s)	259, 575
Sse9I	AATT	8 cut(s)	115, 130, 146, 163, 283, 367, 701, 869
SseBI	AGGCCT	1 cut(s)	94
SsiI	CCGC	2 cut(s)	225, 753
SspI	AATATT	1 cut(s)	661
SspMI	CTAG	2 cut(s)	519, 734
StuI	AGGCCT	1 cut(s)	94
StyI	CCWWGG	5 cut(s)	45, 122, 418, 618, 687
TaaI	ACNGT	1 cut(s)	297
TaqI	TCGA	3 cut(s)	281, 638, 744
TasI	AATT	8 cut(s)	115, 130, 146, 163, 283, 367, 701, 869
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	3 cut(s)	53, 841, 899
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	2 cut(s)	20, 871
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	2 cut(s)	571, 835
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	4 cut(s)	276, 528, 601, 927
TspGWI	ACGGA	2 cut(s)	774, 933
TspRI	CASTG	2 cut(s)	20, 871
Van91I	CCANNNNNTGG	1 cut(s)	716
XapI	RAATTY	4 cut(s)	146, 283, 701, 869
XbaI	TCTAGA	1 cut(s)	733
XspI	CTAG	2 cut(s)	519, 734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.