Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002079

Physical Location & Seq

Genomic Coordinates Forward (+)

65241509 .. 65244497

Gene Structure 2989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG443700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGGAGTTGAAGTTTCTGATTCAAGGCCTATCTTAGAGAGAAGAGGAAGACCTCAGAAGGATCAAGCTTTGAATTGTCCAAGGTGCAACTCAACAACCACTAAATTCTGTTACTATAACAATTACAGTCTCTCTCAGCCAAGGTACTTCTGTAAGACTTGTAGAAGGTATTGGACTGAAGGTGGGTCTTTGAGAAATGTTCCAGTGGGTGGAGGCTCAAGGAAGAATAACAAGAGATCTTCAACTTCATCATCTTCGTCCCCATCAACTTCCAATTCATCTAAGAAGCTTGCTCATCATGATCTGGTGATGACCCAACAAAGTGCTGATTCTCAAAACCCTAAGATCCACCAAGGTCAAGATCTCAACCTAGCATACCCACCAACATCTGATCAGGACTATGATCATCATAGCATCTTTAACCCTAGCTCTTCTAGAATTAGTACTTCATCCCCTCATAATCTCTCAGCTATGGAGCTCCTCAAGAGTACTGGGATCAATGCATCAAGGGGATTAATGAACTCTTTCATGGCTCCCATATCTGTAGCAGATTCGAATACTATCACGATGTTCTCTACTGGTAATCATGGGTTTCCAAATTTGCAAGAATTTAAGCCAAGGCTCAGTTTTTCTCTTGATGGGTATGAGAGTGGCTATGGAAGTCTTCAAGGCGTTCAAGATGGTACTAGTCATCATCATGCAAGGCTCTTGTTTCCTACTGATCAGGATTTGAAGCAGATTCCAAGCAGTACTACTAATACTACTACAAGCACTGAATTTGAGCAAAATGGAGGGGAAGGAGATCATTCTGGTGTGTATTGGAATGGAATGTTAGGTGGAGGATCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

283

Amino Acids

31.08

Weight (kDa)

8.56

Isoelectric Point (pI)

49.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	21 - 78	6.3e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46590 AT2G46590 AT3G61850 AT3G61850 AT3G61850 AT3G61850 AT3G61850
fragaria_vesca	FvH4_7g17000 FvH4_7g17000 FvH4_7g17000 FvH4_7g32170 FvH4_7g32170 FvH4_7g32170
malus_domestica	MD01G1084700.v1.1 MD01G1224500.v1.1 MD07G1153300.v1.1 MD07G1295200.v1.1
prunus_persica	Prupe.2G192300_v2.0.a1 Prupe.2G192300_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1
pyrus_communis	pycom01g23320 pycom07g26780
rosa_chinensis	RchiOBHm_Chr1g0360381 RchiOBHm_Chr1g0381791
rosa_laevigata	RLG00000026205 RLG00000027812
rosa_multiflora	Rmu_sc0008418.1_g000008 Rmu_ssc0000368.1_g000076
rosa_roxburghii	Rroxscaffold_4G00278450 Rroxscaffold_4G00296170
rosa_rugosa	Rorug01G0276400 Rorug01G0276500 Rorug01G0431000
rosa_samantha	Rh1AG290500 Rh1AG454400 Rh1BG255600 Rh1CG273300 Rh1CG426000 Rh1DG285400 Rh1DG443700
rosa_wichuraiana	Rw1G025720 Rw1G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	209
AclWI	GGATC	4 cut(s)	69, 340, 503, 850
AcsI	RAATTY	4 cut(s)	104, 598, 608, 776
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	5 cut(s)	146, 445, 490, 685, 751
AfiI	CCNNNNNNNGG	1 cut(s)	209
AgsI	TTSAA	7 cut(s)	11, 24, 73, 243, 668, 677, 733
AhlI	ACTAGT	1 cut(s)	686
AluBI	AGCT	5 cut(s)	68, 289, 429, 470, 478
AluI	AGCT	5 cut(s)	68, 289, 429, 470, 478
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	4 cut(s)	69, 340, 503, 850
AoxI	GGCC	1 cut(s)	26
ApoI	RAATTY	4 cut(s)	104, 598, 608, 776
AseI	ATTAAT	1 cut(s)	515
Asp700I	GAANNNNTTC	1 cut(s)	524
AsuHPI	GGTGA	1 cut(s)	319
AsuII	TTCGAA	1 cut(s)	554
BaeI	ACNNNNGTAYC	2 cut(s)	136, 169
BanII	GRGCYC	1 cut(s)	480
BbsI	GAAGAC	2 cut(s)	55, 656
Bbv12I	GWGCWC	1 cut(s)	480
BccI	CCATC	3 cut(s)	271, 632, 674
BclI	TGATCA	3 cut(s)	391, 403, 721
BcoDI	GTCTC	1 cut(s)	134
BcuI	ACTAGT	1 cut(s)	686
BfaI	CTAG	4 cut(s)	371, 426, 435, 687
BfmI	CTRYAG	1 cut(s)	543
BglII	AGATCT	2 cut(s)	236, 361
BmcAI	AGTACT	3 cut(s)	445, 490, 751
BmiI	GGNNCC	1 cut(s)	534
BmrI	ACTGGG	1 cut(s)	501
BmsI	GCATC	2 cut(s)	423, 512
BmuI	ACTGGG	1 cut(s)	501
BpiI	GAAGAC	2 cut(s)	55, 656
Bpu14I	TTCGAA	1 cut(s)	554
BpuEI	CTTGAG	2 cut(s)	202, 467
BsaJI	CCNNGG	4 cut(s)	80, 140, 352, 617
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse1I	ACTGG	3 cut(s)	203, 496, 583
BseDI	CCNNGG	4 cut(s)	80, 140, 352, 617
BseGI	GGATG	1 cut(s)	449
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMII	CTCAG	4 cut(s)	68, 149, 480, 637
BseNI	ACTGG	3 cut(s)	203, 496, 583
BseRI	GAGGAG	1 cut(s)	470
BshFI	GGCC	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	480
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmAI	GTCTC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	244
BsnI	GGCC	1 cut(s)	28
Bsp119I	TTCGAA	1 cut(s)	554
Bsp1286I	GDGCHC	1 cut(s)	480
BspANI	GGCC	1 cut(s)	28
BspCNI	CTCAG	4 cut(s)	67, 148, 479, 636
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	1 cut(s)	534
BspPI	GGATC	4 cut(s)	69, 340, 503, 850
BspQI	GCTCTTC	1 cut(s)	436
BspT104I	TTCGAA	1 cut(s)	554
BsrI	ACTGG	3 cut(s)	203, 496, 583
BssECI	CCNNGG	4 cut(s)	80, 140, 352, 617
BssT1I	CCWWGG	4 cut(s)	80, 140, 352, 617
Bst4CI	ACNGT	1 cut(s)	128
Bst6I	CTCTTC	2 cut(s)	37, 436
BstBI	TTCGAA	1 cut(s)	554
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	7 cut(s)	34, 54, 135, 282, 342, 466, 623
BstF5I	GGATG	1 cut(s)	449
BstMAI	GTCTC	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	543
BstV2I	GAAGAC	2 cut(s)	55, 656
BstX2I	RGATCY	3 cut(s)	236, 345, 361
BstYI	RGATCY	3 cut(s)	236, 345, 361
BsuRI	GGCC	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	449
BtsIMutI	CAGTG	2 cut(s)	210, 771
Cac8I	GCNNGC	1 cut(s)	291
CciI	TCATGA	1 cut(s)	298
Csp6I	GTAC	5 cut(s)	145, 444, 489, 684, 750
CviAII	CATG	5 cut(s)	299, 529, 587, 698, 846
CviQI	GTAC	5 cut(s)	145, 444, 489, 684, 750
DdeI	CTNAG	7 cut(s)	34, 54, 135, 282, 342, 466, 623
Eam1104I	CTCTTC	2 cut(s)	37, 436
EarI	CTCTTC	2 cut(s)	37, 436
Ecl136II	GAGCTC	1 cut(s)	478
Eco130I	CCWWGG	4 cut(s)	80, 140, 352, 617
Eco147I	AGGCCT	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	480
Eco53kI	GAGCTC	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	478
EcoT14I	CCWWGG	4 cut(s)	80, 140, 352, 617
EcoT22I	ATGCAT	1 cut(s)	505
EcoT38I	GRGCYC	1 cut(s)	480
ErhI	CCWWGG	4 cut(s)	80, 140, 352, 617
FaeI	CATG	5 cut(s)	302, 532, 590, 701, 849
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	5 cut(s)	298, 528, 586, 697, 845
FbaI	TGATCA	3 cut(s)	391, 403, 721
FokI	GGATG	1 cut(s)	436
FriOI	GRGCYC	1 cut(s)	480
FspBI	CTAG	4 cut(s)	371, 426, 435, 687
HaeIII	GGCC	1 cut(s)	28
Hin1II	CATG	5 cut(s)	302, 532, 590, 701, 849
HindIII	AAGCTT	2 cut(s)	66, 287
HinfI	GANTC	4 cut(s)	20, 329, 551, 739
HphI	GGTGA	1 cut(s)	319
Hpy188I	TCNGA	3 cut(s)	19, 57, 391
Hpy188III	TCNNGA	9 cut(s)	299, 359, 395, 435, 484, 565, 635, 677, 725
HpyAV	CCTTC	4 cut(s)	52, 159, 173, 791
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4V	TGCA	4 cut(s)	87, 503, 604, 701
HpyF3I	CTNAG	7 cut(s)	34, 54, 135, 282, 342, 466, 623
Hsp92II	CATG	5 cut(s)	302, 532, 590, 701, 849
Ksp22I	TGATCA	3 cut(s)	391, 403, 721
LguI	GCTCTTC	1 cut(s)	436
LmnI	GCTCC	3 cut(s)	475, 483, 538
LpnPI	CCDG	7 cut(s)	216, 290, 380, 477, 564, 710, 795
LweI	GCATC	2 cut(s)	423, 512
MaeI	CTAG	4 cut(s)	371, 426, 435, 687
MaeIII	GTNAC	1 cut(s)	110
MboII	GAAGA	7 cut(s)	54, 60, 231, 235, 246, 423, 656
MflI	RGATCY	3 cut(s)	236, 345, 361
MhlI	GDGCHC	1 cut(s)	480
MluCI	AATT	8 cut(s)	73, 104, 121, 274, 438, 598, 608, 776
MnlI	CCTC	7 cut(s)	38, 63, 206, 465, 491, 785, 833
Mph1103I	ATGCAT	1 cut(s)	505
MroXI	GAANNNNTTC	1 cut(s)	524
MseI	TTAA	3 cut(s)	420, 515, 612
MslI	CAYNNNNRTG	2 cut(s)	696, 810
NlaIII	CATG	5 cut(s)	302, 532, 590, 701, 849
NlaIV	GGNNCC	1 cut(s)	534
NsiI	ATGCAT	1 cut(s)	505
NspV	TTCGAA	1 cut(s)	554
PagI	TCATGA	1 cut(s)	298
PceI	AGGCCT	1 cut(s)	28
PciSI	GCTCTTC	1 cut(s)	436
PdmI	GAANNNNTTC	1 cut(s)	524
PfeI	GAWTC	4 cut(s)	20, 329, 551, 739
PflMI	CCANNNNNTGG	1 cut(s)	209
PshBI	ATTAAT	1 cut(s)	515
Psp124BI	GAGCTC	1 cut(s)	480
PspN4I	GGNNCC	1 cut(s)	534
PsuI	RGATCY	3 cut(s)	236, 345, 361
RsaI	GTAC	5 cut(s)	146, 445, 490, 685, 751
RsaNI	GTAC	5 cut(s)	145, 444, 489, 684, 750
RseI	CAYNNNNRTG	2 cut(s)	696, 810
SacI	GAGCTC	1 cut(s)	480
SapI	GCTCTTC	1 cut(s)	436
SaqAI	TTAA	3 cut(s)	420, 515, 612
ScaI	AGTACT	3 cut(s)	445, 490, 751
SduI	GDGCHC	1 cut(s)	480
SfaNI	GCATC	2 cut(s)	423, 512
SfcI	CTRYAG	1 cut(s)	543
SfuI	TTCGAA	1 cut(s)	554
SmiMI	CAYNNNNRTG	2 cut(s)	696, 810
SmlI	CTYRAG	2 cut(s)	217, 482
SmoI	CTYRAG	2 cut(s)	217, 482
SpeI	ACTAGT	1 cut(s)	686
Sse9I	AATT	8 cut(s)	73, 104, 121, 274, 438, 598, 608, 776
SseBI	AGGCCT	1 cut(s)	28
SspMI	CTAG	4 cut(s)	371, 426, 435, 687
SstI	GAGCTC	1 cut(s)	480
StuI	AGGCCT	1 cut(s)	28
StyI	CCWWGG	4 cut(s)	80, 140, 352, 617
TaaI	ACNGT	1 cut(s)	128
TaqI	TCGA	1 cut(s)	554
TasI	AATT	8 cut(s)	73, 104, 121, 274, 438, 598, 608, 776
TatI	WGTACW	3 cut(s)	443, 488, 749
TfiI	GAWTC	4 cut(s)	20, 329, 551, 739
Tru1I	TTAA	3 cut(s)	420, 515, 612
Tru9I	TTAA	3 cut(s)	420, 515, 612
TscAI	CASTG	2 cut(s)	210, 778
TspDTI	ATGAA	5 cut(s)	237, 267, 438, 517, 533
TspRI	CASTG	2 cut(s)	210, 778
Van91I	CCANNNNNTGG	1 cut(s)	209
VspI	ATTAAT	1 cut(s)	515
XapI	RAATTY	4 cut(s)	104, 598, 608, 776
XbaI	TCTAGA	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	524
XspI	CTAG	4 cut(s)	371, 426, 435, 687
ZrmI	AGTACT	3 cut(s)	445, 490, 751
Zsp2I	ATGCAT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.