Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002079

Physical Location & Seq

Genomic Coordinates Forward (+)

23150226 .. 23152526

Gene Structure 2301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32170.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGACACAGCTCACTGGCCACAGGGGATTGGAGTTAAATCCATGGGAGCTGAAGTTCCTGATTCAAGGCCTATCTTAGAAAGAAGAGGAAGACCCCAAAAGGATCAAGCTTTGAATTGTCCAAGGTGCAACTCAACAACCACTAAATTCTGTTACTATAACAATTACAGTCTCTCTCAGCCAAGGTACTTCTGCAAGACTTGTAAAAGGTATTGGACTGACGGTGGATCTTTGAGAAATGTTCCAGTGGGTGGAGGCTCTAGGAAGAACAAGAGATCTTCATCTTCCTCACCATCAACTTCCAATTCATCAAAGAAGCTTGCTCATCATGATCTGGTGATGACCCAACAAAGCGCTGATTCTCAAAACCCTAAGATCCACCAAGGTCAAGATCTCAACCTAGCATACCCACCAACATCGGATCACGAGTATGATCATCATAGCATCTTTAACCCTAGCTCTTCTAGAATTAGTACTTTATCCCCTCATAATCTCTCGGCTATGGAGCTGCTCAAAAGTACCGGGATCAATGCATCAAGGGGATTAATGAACTCTTTCATGGCTCCCATGTCTGTAGCAGATTCGAATACTATTACGATGTTCTCTACTGGTAATAATCATGGGTTTCCAAATTTGCAAGAGTTTAAGCCAAGTCTCAGTTTTTCTCTTGATGGGTACGAGAGTGGCTATGGAAGTCTTCAAGGTGTTGGTACTAGTCATCATCATGCAAGGCTGTTGTTTCCTACTGATCAGGATTTGAAGCAGATTCCAAGCACTACTACTGAAACTACTACTACAAGTACTGAGTTTGAGCAAAATAGAGGGGAAGGAGATCATTCTGGTGTGTATTGGAATGGAATGTTAGGTGGAGGATCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

294

Amino Acids

32.23

Weight (kDa)

8.54

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	21 - 78	2.3e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46590 AT2G46590 AT3G61850 AT3G61850 AT3G61850 AT3G61850 AT3G61850
fragaria_vesca	FvH4_7g17000 FvH4_7g17000 FvH4_7g17000 FvH4_7g32170 FvH4_7g32170 FvH4_7g32170
malus_domestica	MD01G1084700.v1.1 MD01G1224500.v1.1 MD07G1153300.v1.1 MD07G1295200.v1.1
prunus_persica	Prupe.2G192300_v2.0.a1 Prupe.2G192300_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1
pyrus_communis	pycom01g23320 pycom07g26780
rosa_chinensis	RchiOBHm_Chr1g0360381 RchiOBHm_Chr1g0381791
rosa_laevigata	RLG00000026205 RLG00000027812
rosa_multiflora	Rmu_sc0008418.1_g000008 Rmu_ssc0000368.1_g000076
rosa_roxburghii	Rroxscaffold_4G00278450 Rroxscaffold_4G00296170
rosa_rugosa	Rorug01G0276400 Rorug01G0276500 Rorug01G0431000
rosa_samantha	Rh1AG290500 Rh1AG454400 Rh1BG255600 Rh1CG273300 Rh1CG426000 Rh1DG285400 Rh1DG443700
rosa_wichuraiana	Rw1G025720 Rw1G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	251
AclWI	GGATC	6 cut(s)	111, 235, 370, 429, 533, 880
AcoI	YGGCCR	1 cut(s)	17
AcsI	RAATTY	2 cut(s)	146, 631
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	6 cut(s)	188, 475, 520, 677, 712, 802
AfeI	AGCGCT	1 cut(s)	355
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	4 cut(s)	66, 115, 701, 760
AhlI	ACTAGT	1 cut(s)	713
AloI	GAACNNNNNNTCC	2 cut(s)	39, 71
AluBI	AGCT	6 cut(s)	11, 50, 110, 319, 459, 508
AluI	AGCT	6 cut(s)	11, 50, 110, 319, 459, 508
Alw26I	GTCTC	2 cut(s)	176, 659
AlwI	GGATC	6 cut(s)	111, 235, 370, 429, 533, 880
Aor51HI	AGCGCT	1 cut(s)	355
AoxI	GGCC	2 cut(s)	17, 68
ApeKI	GCWGC	1 cut(s)	508
ApoI	RAATTY	2 cut(s)	146, 631
AseI	ATTAAT	1 cut(s)	545
Asp700I	GAANNNNTTC	1 cut(s)	554
AspLEI	GCGC	1 cut(s)	356
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	2 cut(s)	282, 349
AsuII	TTCGAA	1 cut(s)	584
BaeI	ACNNNNGTAYC	2 cut(s)	667, 700
BalI	TGGCCA	1 cut(s)	19
BauI	CACGAG	1 cut(s)	425
BbsI	GAAGAC	2 cut(s)	97, 689
BbvI	GCAGC	1 cut(s)	495
BccI	CCATC	2 cut(s)	301, 665
BclI	TGATCA	2 cut(s)	433, 748
BcnI	CCSGG	1 cut(s)	523
BcoDI	GTCTC	2 cut(s)	176, 659
BcuI	ACTAGT	1 cut(s)	713
BfaI	CTAG	5 cut(s)	261, 401, 456, 465, 714
BfmI	CTRYAG	1 cut(s)	573
BfoI	RGCGCY	1 cut(s)	357
BglII	AGATCT	2 cut(s)	275, 391
BisI	GCNGC	1 cut(s)	509
BlsI	GCNGC	1 cut(s)	510
BmcAI	AGTACT	2 cut(s)	475, 802
Bme1390I	CCNGG	1 cut(s)	523
BmiI	GGNNCC	1 cut(s)	564
BmrFI	CCNGG	1 cut(s)	523
BmsI	GCATC	2 cut(s)	453, 542
BpiI	GAAGAC	2 cut(s)	97, 689
Bpu14I	TTCGAA	1 cut(s)	584
BpuMI	CCSGG	1 cut(s)	523
BsaBI	GATNNNNATC	1 cut(s)	280
BsaJI	CCNNGG	4 cut(s)	42, 122, 182, 382
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	3 cut(s)	20, 245, 613
Bse8I	GATNNNNATC	1 cut(s)	280
BseDI	CCNNGG	4 cut(s)	42, 122, 182, 382
BseJI	GATNNNNATC	1 cut(s)	280
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMII	CTCAG	3 cut(s)	191, 670, 795
BseNI	ACTGG	3 cut(s)	20, 245, 613
BseXI	GCAGC	1 cut(s)	495
BshFI	GGCC	2 cut(s)	19, 70
BsiSI	CCGG	1 cut(s)	522
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	2 cut(s)	176, 659
BsnI	GGCC	2 cut(s)	19, 70
Bsp119I	TTCGAA	1 cut(s)	584
Bsp19I	CCATGG	1 cut(s)	42
BspANI	GGCC	2 cut(s)	19, 70
BspCNI	CTCAG	3 cut(s)	190, 669, 796
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	564
BspPI	GGATC	6 cut(s)	111, 235, 370, 429, 533, 880
BspQI	GCTCTTC	1 cut(s)	466
BspT104I	TTCGAA	1 cut(s)	584
BsrI	ACTGG	3 cut(s)	20, 245, 613
BssECI	CCNNGG	4 cut(s)	42, 122, 182, 382
BssSI	CACGAG	1 cut(s)	425
BssT1I	CCWWGG	4 cut(s)	42, 122, 182, 382
Bst2BI	CACGAG	1 cut(s)	425
Bst4CI	ACNGT	2 cut(s)	170, 224
Bst6I	CTCTTC	2 cut(s)	79, 466
BstBI	TTCGAA	1 cut(s)	584
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	5 cut(s)	76, 177, 372, 656, 804
BstDSI	CCRYGG	1 cut(s)	42
BstH2I	RGCGCY	1 cut(s)	357
BstHHI	GCGC	1 cut(s)	356
BstMAI	GTCTC	2 cut(s)	176, 659
BstSCI	CCNGG	1 cut(s)	521
BstSFI	CTRYAG	1 cut(s)	573
BstV1I	GCAGC	1 cut(s)	495
BstV2I	GAAGAC	2 cut(s)	97, 689
BstX2I	RGATCY	4 cut(s)	227, 275, 375, 391
BstYI	RGATCY	4 cut(s)	227, 275, 375, 391
BsuRI	GGCC	2 cut(s)	19, 70
BtgI	CCRYGG	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	13, 252
Cac8I	GCNNGC	1 cut(s)	321
CciI	TCATGA	1 cut(s)	328
CfoI	GCGC	1 cut(s)	356
Csp6I	GTAC	6 cut(s)	187, 474, 519, 676, 711, 801
CviAII	CATG	7 cut(s)	43, 329, 559, 568, 620, 725, 876
CviQI	GTAC	6 cut(s)	187, 474, 519, 676, 711, 801
DdeI	CTNAG	5 cut(s)	76, 177, 372, 656, 804
EaeI	YGGCCR	1 cut(s)	17
Eam1104I	CTCTTC	2 cut(s)	79, 466
EarI	CTCTTC	2 cut(s)	79, 466
Eco130I	CCWWGG	4 cut(s)	42, 122, 182, 382
Eco147I	AGGCCT	1 cut(s)	70
Eco47III	AGCGCT	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	72
EcoT14I	CCWWGG	4 cut(s)	42, 122, 182, 382
EcoT22I	ATGCAT	1 cut(s)	535
ErhI	CCWWGG	4 cut(s)	42, 122, 182, 382
FaeI	CATG	7 cut(s)	46, 332, 562, 571, 623, 728, 879
FatI	CATG	7 cut(s)	42, 328, 558, 567, 619, 724, 875
FbaI	TGATCA	2 cut(s)	433, 748
Fnu4HI	GCNGC	1 cut(s)	509
Fsp4HI	GCNGC	1 cut(s)	509
FspBI	CTAG	5 cut(s)	261, 401, 456, 465, 714
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	1 cut(s)	509
HaeII	RGCGCY	1 cut(s)	357
HaeIII	GGCC	2 cut(s)	19, 70
HapII	CCGG	1 cut(s)	522
HhaI	GCGC	1 cut(s)	356
Hin1II	CATG	7 cut(s)	46, 332, 562, 571, 623, 728, 879
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HindIII	AAGCTT	2 cut(s)	108, 317
HinfI	GANTC	4 cut(s)	62, 359, 581, 766
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	2 cut(s)	282, 349
Hpy188I	TCNGA	1 cut(s)	421
Hpy188III	TCNNGA	7 cut(s)	59, 329, 389, 425, 465, 668, 752
HpyAV	CCTTC	1 cut(s)	821
HpyCH4III	ACNGT	2 cut(s)	170, 224
HpyCH4V	TGCA	5 cut(s)	129, 195, 533, 637, 728
HpyF3I	CTNAG	5 cut(s)	76, 177, 372, 656, 804
Hsp92II	CATG	7 cut(s)	46, 332, 562, 571, 623, 728, 879
HspAI	GCGC	1 cut(s)	354
Ksp22I	TGATCA	2 cut(s)	433, 748
LguI	GCTCTTC	1 cut(s)	466
LmnI	GCTCC	3 cut(s)	47, 505, 568
LpnPI	CCDG	8 cut(s)	8, 72, 258, 320, 535, 594, 737, 825
Lsp1109I	GCAGC	1 cut(s)	495
LweI	GCATC	2 cut(s)	453, 542
MaeI	CTAG	5 cut(s)	261, 401, 456, 465, 714
MaeIII	GTNAC	1 cut(s)	152
MboII	GAAGA	7 cut(s)	96, 102, 270, 276, 277, 453, 689
MflI	RGATCY	4 cut(s)	227, 275, 375, 391
MlsI	TGGCCA	1 cut(s)	19
MluCI	AATT	6 cut(s)	115, 146, 163, 304, 468, 631
MluNI	TGGCCA	1 cut(s)	19
MnlI	CCTC	6 cut(s)	80, 248, 298, 495, 815, 863
Mox20I	TGGCCA	1 cut(s)	19
Mph1103I	ATGCAT	1 cut(s)	535
MroXI	GAANNNNTTC	1 cut(s)	554
MscI	TGGCCA	1 cut(s)	19
MseI	TTAA	4 cut(s)	36, 450, 545, 645
MslI	CAYNNNNRTG	3 cut(s)	429, 723, 840
Msp20I	TGGCCA	1 cut(s)	19
MspI	CCGG	1 cut(s)	522
MspR9I	CCNGG	1 cut(s)	523
NciI	CCSGG	1 cut(s)	523
NcoI	CCATGG	1 cut(s)	42
NlaIII	CATG	7 cut(s)	46, 332, 562, 571, 623, 728, 879
NlaIV	GGNNCC	1 cut(s)	564
NmeAIII	GCCGAG	1 cut(s)	476
NsiI	ATGCAT	1 cut(s)	535
NspV	TTCGAA	1 cut(s)	584
PagI	TCATGA	1 cut(s)	328
PceI	AGGCCT	1 cut(s)	70
PciSI	GCTCTTC	1 cut(s)	466
PdmI	GAANNNNTTC	1 cut(s)	554
PfeI	GAWTC	4 cut(s)	62, 359, 581, 766
PflMI	CCANNNNNTGG	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	510
PshBI	ATTAAT	1 cut(s)	545
PspN4I	GGNNCC	1 cut(s)	564
PsuI	RGATCY	4 cut(s)	227, 275, 375, 391
RsaI	GTAC	6 cut(s)	188, 475, 520, 677, 712, 802
RsaNI	GTAC	6 cut(s)	187, 474, 519, 676, 711, 801
RseI	CAYNNNNRTG	3 cut(s)	429, 723, 840
SapI	GCTCTTC	1 cut(s)	466
SaqAI	TTAA	4 cut(s)	36, 450, 545, 645
SatI	GCNGC	1 cut(s)	509
ScaI	AGTACT	2 cut(s)	475, 802
ScrFI	CCNGG	1 cut(s)	523
SfaNI	GCATC	2 cut(s)	453, 542
SfcI	CTRYAG	1 cut(s)	573
SfuI	TTCGAA	1 cut(s)	584
SmiMI	CAYNNNNRTG	3 cut(s)	429, 723, 840
SpeI	ACTAGT	1 cut(s)	713
Sse9I	AATT	6 cut(s)	115, 146, 163, 304, 468, 631
SseBI	AGGCCT	1 cut(s)	70
SspMI	CTAG	5 cut(s)	261, 401, 456, 465, 714
StuI	AGGCCT	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	521
StyI	CCWWGG	4 cut(s)	42, 122, 182, 382
TaaI	ACNGT	2 cut(s)	170, 224
TaqI	TCGA	1 cut(s)	584
TasI	AATT	6 cut(s)	115, 146, 163, 304, 468, 631
TatI	WGTACW	2 cut(s)	473, 800
TfiI	GAWTC	4 cut(s)	62, 359, 581, 766
Tru1I	TTAA	4 cut(s)	36, 450, 545, 645
Tru9I	TTAA	4 cut(s)	36, 450, 545, 645
TscAI	CASTG	2 cut(s)	20, 252
TseI	GCWGC	1 cut(s)	508
TspDTI	ATGAA	4 cut(s)	270, 297, 547, 563
TspRI	CASTG	2 cut(s)	20, 252
Van91I	CCANNNNNTGG	1 cut(s)	251
VspI	ATTAAT	1 cut(s)	545
XapI	RAATTY	2 cut(s)	146, 631
XbaI	TCTAGA	1 cut(s)	464
XmnI	GAANNNNTTC	1 cut(s)	554
XspI	CTAG	5 cut(s)	261, 401, 456, 465, 714
ZrmI	AGTACT	2 cut(s)	475, 802
Zsp2I	ATGCAT	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.