Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002067

Physical Location & Seq

Genomic Coordinates Reverse (-)

19164357 .. 19165233

Gene Structure 877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G46670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTATTTAACTTGCAGATTTGAGGAAAGCAAGTCAGCAGAAAAAGCCGTCGTTGCTTTAGAGGAGAGTACTTCAGGTGAGCCAAAGACACCAACCGAATCACATGAAAAGTTGAGAAAAGTAAGATCTGATCAAGGAAGCTCCACAACGAGCAGCAACCAGGAGAATATCGGATCATCAAGCGTAAGCTTCCGTAACCAAGTTCTTCAGTCCACAGTAACGAATCAGAAGCAAGATTCACCCATACCGGTAGAATCAAATCGCGAGAAAGCAGCTAGCAAGGAAGTAGAAGCTGGTTCTCAAAGCACCAATGAGGGGATTGCTGGACAAAGCAGTAGCACAGAGAAACCAAAGGAAGAAGAAAGTGCGAAACAACGTTGGAGTAGAAGCCAGAGAGAAGCTGCATTGATGAAGTTCCGGTTGAAGAGGAAAGATCGATGCTTTGACAAAAAGGTTCGGTACCAGAGCAGGAAGAAGCTAGCAGAACAACGTCCTCGAGTGAAAGGCCAGTTCGTGCGAACCGTGAATTCAGACGCGTCTACAAAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048511 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

183

Amino Acids

20.54

Weight (kDa)

9.77

Isoelectric Point (pI)

64.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	132 - 173	1.4e-18	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46670 AT2G46790 AT2G46790 AT2G46790 AT2G46790 AT2G46790
fragaria_vesca	FvH4_7g17760 FvH4_7g17760 FvH4_7g17760 FvH4_7g17760 FvH4_7g17760
malus_domestica	MD01G1088900.v1.1
prunus_persica	Prupe.2G198500_v2.0.a1 Prupe.2G198500_v2.0.a1
pyrus_communis	pycom01g11320
rosa_chinensis	RchiOBHm_Chr1g0361151
rosa_laevigata	RLG00000027745
rosa_multiflora	Rmu_co8346237.1_g000001 Rmu_sc0000309.1_g000018 Rmu_sc0000427.1_g000034 Rmu_sc0001816.1_g000014 Rmu_sc0002872.1_g000001 Rmu_sc0006147.1_g000005 Rmu_sc0035862.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295360 Rroxscaffold_6G00419120
rosa_rugosa	Rorug01G0286500 Rorug01G0286500 Rorug01G0286500 Rorug01G0286500
rosa_samantha	Rh1AG206100 Rh1AG297800 Rh1BG261800 Rh1CG191000 Rh1CG279200 Rh1DG291700 Rh2BG478900 Rh2DG487700 Rh2DG555300 Rh3AG290400 Rh4AG103700 Rh4AG103800 Rh4CG112000
rosa_wichuraiana	Rw1G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	459
AccB1I	GGYRCC	1 cut(s)	459
AccI	GTMKAC	1 cut(s)	539
AccII	CGCG	2 cut(s)	264, 536
AclI	AACGTT	1 cut(s)	376
AclWI	GGATC	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	526
AcuI	CTGAAG	2 cut(s)	57, 191
AfaI	GTAC	2 cut(s)	70, 461
AfiI	CCNNNNNNNGG	1 cut(s)	315
AflIII	ACRYGT	1 cut(s)	534
AgeI	ACCGGT	1 cut(s)	247
AgsI	TTSAA	1 cut(s)	424
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	6 cut(s)	141, 189, 275, 293, 401, 478
AluI	AGCT	6 cut(s)	141, 189, 275, 293, 401, 478
AlwI	GGATC	1 cut(s)	181
Ama87I	CYCGRG	1 cut(s)	495
AoxI	GGCC	1 cut(s)	505
ApeKI	GCWGC	3 cut(s)	153, 272, 401
ApoI	RAATTY	1 cut(s)	526
AsiGI	ACCGGT	1 cut(s)	247
Asp718I	GGTACC	1 cut(s)	459
AsuHPI	GGTGA	2 cut(s)	89, 231
AsuNHI	GCTAGC	2 cut(s)	275, 478
AvaI	CYCGRG	1 cut(s)	495
BanI	GGYRCC	1 cut(s)	459
BbvI	GCAGC	3 cut(s)	165, 284, 388
BceAI	ACGGC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	161
BclI	TGATCA	1 cut(s)	130
BfaI	CTAG	2 cut(s)	276, 479
BglII	AGATCT	1 cut(s)	125
BisI	GCNGC	3 cut(s)	154, 273, 402
BlsI	GCNGC	3 cut(s)	155, 274, 403
BmcAI	AGTACT	1 cut(s)	70
Bme1390I	CCNGG	1 cut(s)	161
BmeT110I	CYCGRG	1 cut(s)	495
BmiI	GGNNCC	1 cut(s)	461
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	1 cut(s)	428
BmtI	GCTAGC	2 cut(s)	279, 482
Bsa29I	ATCGAT	1 cut(s)	436
BsaWI	WCCGGW	2 cut(s)	247, 417
Bsc4I	CCNNNNNNNGG	1 cut(s)	315
Bse118I	RCCGGY	1 cut(s)	247
Bse1I	ACTGG	1 cut(s)	508
BseBI	CCWGG	1 cut(s)	161
BseCI	ATCGAT	1 cut(s)	436
BseLI	CCNNNNNNNGG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	508
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	3 cut(s)	165, 284, 388
Bsh1236I	CGCG	2 cut(s)	264, 536
BshFI	GGCC	1 cut(s)	507
BshNI	GGYRCC	1 cut(s)	459
BshTI	ACCGGT	1 cut(s)	247
BshVI	ATCGAT	1 cut(s)	436
BsiHKCI	CYCGRG	1 cut(s)	495
BsiSI	CCGG	2 cut(s)	248, 418
BslI	CCNNNNNNNGG	1 cut(s)	315
BsnI	GGCC	1 cut(s)	507
BsoBI	CYCGRG	1 cut(s)	495
Bsp143I	GATC	4 cut(s)	125, 130, 173, 433
Bsp68I	TCGCGA	1 cut(s)	264
BspANI	GGCC	1 cut(s)	507
BspDI	ATCGAT	1 cut(s)	436
BspFNI	CGCG	2 cut(s)	264, 536
BspHI	TCATGA	1 cut(s)	548
BspLI	GGNNCC	1 cut(s)	461
BspOI	GCTAGC	2 cut(s)	279, 482
BspPI	GGATC	1 cut(s)	181
BspT107I	GGYRCC	1 cut(s)	459
BsrFI	RCCGGY	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	508
BssAI	RCCGGY	1 cut(s)	247
BssMI	GATC	4 cut(s)	125, 130, 173, 433
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	2 cut(s)	217, 523
Bst6I	CTCTTC	1 cut(s)	419
BstC8I	GCNNGC	2 cut(s)	277, 480
BstFNI	CGCG	2 cut(s)	264, 536
BstKTI	GATC	4 cut(s)	128, 133, 176, 436
BstMBI	GATC	4 cut(s)	125, 130, 173, 433
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 53
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	159
BstUI	CGCG	2 cut(s)	264, 536
BstV1I	GCAGC	3 cut(s)	165, 284, 388
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
Bsu15I	ATCGAT	1 cut(s)	436
BsuRI	GGCC	1 cut(s)	507
BsuTUI	ATCGAT	1 cut(s)	436
BtuMI	TCGCGA	1 cut(s)	264
Cac8I	GCNNGC	2 cut(s)	277, 480
CciI	TCATGA	1 cut(s)	548
Cfr10I	RCCGGY	1 cut(s)	247
ClaI	ATCGAT	1 cut(s)	436
CseI	GACGC	2 cut(s)	525, 542
Csp6I	GTAC	2 cut(s)	69, 460
CspAI	ACCGGT	1 cut(s)	247
CviAII	CATG	2 cut(s)	104, 549
CviQI	GTAC	2 cut(s)	69, 460
DpnI	GATC	4 cut(s)	127, 132, 175, 435
DpnII	GATC	4 cut(s)	125, 130, 173, 433
Eam1104I	CTCTTC	1 cut(s)	419
EarI	CTCTTC	1 cut(s)	419
Eco57I	CTGAAG	2 cut(s)	57, 191
Eco88I	CYCGRG	1 cut(s)	495
EcoRI	GAATTC	1 cut(s)	526
EcoRII	CCWGG	1 cut(s)	159
FaeI	CATG	2 cut(s)	107, 552
FaiI	YATR	3 cut(s)	105, 245, 550
FatI	CATG	2 cut(s)	103, 548
FbaI	TGATCA	1 cut(s)	130
FblI	GTMKAC	1 cut(s)	539
Fnu4HI	GCNGC	3 cut(s)	154, 273, 402
Fsp4HI	GCNGC	3 cut(s)	154, 273, 402
FspBI	CTAG	2 cut(s)	276, 479
GluI	GCNGC	3 cut(s)	154, 273, 402
HaeIII	GGCC	1 cut(s)	507
HapII	CCGG	2 cut(s)	248, 418
HgaI	GACGC	2 cut(s)	525, 542
Hin1II	CATG	2 cut(s)	107, 552
HindIII	AAGCTT	1 cut(s)	187
HinfI	GANTC	4 cut(s)	98, 223, 236, 254
HpaII	CCGG	2 cut(s)	248, 418
HphI	GGTGA	2 cut(s)	89, 231
Hpy166II	GTNNAC	2 cut(s)	213, 540
Hpy188I	TCNGA	4 cut(s)	130, 173, 228, 532
Hpy188III	TCNNGA	2 cut(s)	263, 549
Hpy8I	GTNNAC	2 cut(s)	213, 540
Hpy99I	CGWCG	1 cut(s)	53
HpyCH4III	ACNGT	2 cut(s)	217, 523
HpyCH4IV	ACGT	2 cut(s)	376, 490
HpyCH4V	TGCA	2 cut(s)	15, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 53
HpySE526I	ACGT	2 cut(s)	376, 490
Hsp92II	CATG	2 cut(s)	107, 552
KpnI	GGTACC	1 cut(s)	463
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	4 cut(s)	125, 130, 173, 433
LmnI	GCTCC	1 cut(s)	146
Lsp1109I	GCAGC	3 cut(s)	165, 284, 388
LweI	GCATC	1 cut(s)	428
MaeI	CTAG	2 cut(s)	276, 479
MaeII	ACGT	2 cut(s)	376, 490
MaeIII	GTNAC	2 cut(s)	194, 217
MalI	GATC	4 cut(s)	127, 132, 175, 435
MboI	GATC	4 cut(s)	125, 130, 173, 433
MboII	GAAGA	5 cut(s)	197, 368, 371, 436, 484
MflI	RGATCY	1 cut(s)	125
MluCI	AATT	1 cut(s)	526
MluI	ACGCGT	1 cut(s)	534
MmeI	TCCRAC	1 cut(s)	359
MnlI	CCTC	5 cut(s)	16, 55, 307, 420, 504
MseI	TTAA	1 cut(s)	8
MspI	CCGG	2 cut(s)	248, 418
MspR9I	CCNGG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	161
MvnI	CGCG	2 cut(s)	264, 536
MwoI	GCNNNNNNNGC	2 cut(s)	44, 53
NdeII	GATC	4 cut(s)	125, 130, 173, 433
NheI	GCTAGC	2 cut(s)	275, 478
NlaIII	CATG	2 cut(s)	107, 552
NlaIV	GGNNCC	1 cut(s)	461
NruI	TCGCGA	1 cut(s)	264
PaeR7I	CTCGAG	1 cut(s)	495
PagI	TCATGA	1 cut(s)	548
PcsI	WCGNNNNNNNCGW	1 cut(s)	519
PfeI	GAWTC	4 cut(s)	98, 223, 236, 254
PinAI	ACCGGT	1 cut(s)	247
PkrI	GCNGC	3 cut(s)	155, 274, 403
Psp1406I	AACGTT	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	461
PspXI	VCTCGAGB	1 cut(s)	495
PsuI	RGATCY	1 cut(s)	125
RruI	TCGCGA	1 cut(s)	264
RsaI	GTAC	2 cut(s)	70, 461
RsaNI	GTAC	2 cut(s)	69, 460
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	3 cut(s)	154, 273, 402
Sau3AI	GATC	4 cut(s)	125, 130, 173, 433
ScaI	AGTACT	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	161
SfaNI	GCATC	1 cut(s)	428
Sfr274I	CTCGAG	1 cut(s)	495
SlaI	CTCGAG	1 cut(s)	495
SmlI	CTYRAG	1 cut(s)	495
SmoI	CTYRAG	1 cut(s)	495
Sse9I	AATT	1 cut(s)	526
SspMI	CTAG	2 cut(s)	276, 479
StyD4I	CCNGG	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	217, 523
TaiI	ACGT	2 cut(s)	379, 493
TaqI	TCGA	2 cut(s)	436, 496
TasI	AATT	1 cut(s)	526
TatI	WGTACW	1 cut(s)	68
TfiI	GAWTC	4 cut(s)	98, 223, 236, 254
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TseI	GCWGC	3 cut(s)	153, 272, 401
TspDTI	ATGAA	2 cut(s)	120, 425
TspGWI	ACGGA	1 cut(s)	182
XapI	RAATTY	1 cut(s)	526
XhoI	CTCGAG	1 cut(s)	495
XmiI	GTMKAC	1 cut(s)	539
XspI	CTAG	2 cut(s)	276, 479
ZrmI	AGTACT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.