Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002067

Physical Location & Seq

Genomic Coordinates Forward (+)

20183520 .. 20187776

Gene Structure 4257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1088900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2058 bp

ATGGGTGAAGTTGCTGTGAGTGGTGGTGAGGGTATGGAGACTGTGAAGCTGGATAAGAACGTGGAGGATGGCGGAGGAGGCAGTGGTGGTGGTGATTCTGGGGAGGTGGTGAGCTGGGAGAGCAACCTGCCAAAAATGGTGCTCCGGGTTCTGCTGGTTGAAGCCGATGATTCGACGCGGCAGATCATCGCTGCGCTTCTCCGAAAATGCAGTTACAAAGTTGTTGCAGTTGGGGATGGATTGAAGGCGTGGGAGGTCATAAAGAGGAAACATCATAAGATAAATCTTATATTAACAGAGACGGAGTTGCCGTCGATTTCCGGATTCGCGCTCCTTACGTTAGTCATGGAACACGACATGTGCAAGAACATACCTGTGATAATGATGTCCTCTGAGGATTCAACTAGCAGGGTCTTGAAATGCATGCTGAAAGGTGCAGCTGACTATCTCATTAAGCCTGTAAGGCGGAATGAGCTGCGTAACCTTTGGCAGCATGTTTGGAGAAGGCAAACTCATGGCGGTGCACCGGTTCCACAAAACGTTAATGTTACACAGAATAAAGTTGAAGCCACTTGCGAGAACAATATAGCAAGTAAACATTCAAATGGTTACGCAGCTTCTACGCAGGAAAATAAGGAATGCAGTGAGAAAGGAAGTGAAGCCCAAAGTTCTTGTACGACGCCTTACTTGGAAGCTGAGAGTGCGTACATGCAAAATATGCAGGATATTCCACAGCTAAAGTATGAGAGTGCTTCTAATTTAAGCAATACAGATATGAAAGGGCTCAAGGAATGTGCTAGACTGGACAACGAATCTGTTGTGCTTGAGAGTGAAGCAAAAGAGAAGTCAGGTACATTTGGATCATATGCTGTACCTTTGAAGGAAGGTCATACCTCAACTGGATTAAGACTCAGAGAGGACAATGTTCAAGGTGAAGGTATGCAACTGGAAAGTTACAAAGGAGATGCTAATATCACTTCTGAAACTCACATCAGCCATTATGGACTGGATGAACCCTCCGGTGGAGCTATTGACTTTATTGGAACCTTTGGGAATTGGCCAAAATGCACTGCCGGACCCCCTGACAATAGAGACGATGGTACAGAGCACATGGGATCCACTCCACAACTGGAACTTTCTTTGAGAAGTTCTCTGGATGGTTCAAACAAGCAAATGAACGATGAAAGGCCTGTGCTGAACCATTCTGATGCTTCTGCCTTTTCATGGTATAATAATAGCAAGACGTTGCAATCCTTTTTCCCAGCATTTCCCATCACTAAATCGGAGGTTGCAAGTAAATCCCATGATAGCCAGGAAAACAAGTCTACCTTGGTTTCCGGTCAAACTGAGGAAGCTGATTTATCGTTTCCAGGCTCTCAACTTGGGATGGTTCCTATCGCTGGGGCAATGTCTGATAATATTTGTGCTGCATACGGTCATTCTTTCCCATCCTTGTTTCATAGACAATCAGATTTAACCCCGACATGGAGTAGCAAATCGGCTTGCAATGGAGCACAATCCTCCTATCCTGTGAATTCCCCAAATCATTCCAATCCTGAAGTTTACCTCTCAGAAGAAGGTTGTCACCTGTCTGACAAGAGTACCTATAAATCTATTGGCCAGACCGTGCATGAGCAGAACAACCAGGAGCAAATGGAGGAACTGAGACCTGGTTCGCCTGCTACTGGGCAAAGTGGCTGTAGTAGTTTAGGCAATGCTGTTGGTAATGCTATTGGTCGCAGTGGACATGGAAGCAATTGTAGTAGCACTAATGGAAATGCCTCTCTGGCCGTGTCCGGTGAGATGGAGGCTTCTGAGAGTTTGAACGACAGTGGTCGTTCTGTTCATGAGGGATTTGGAGGAGCTGATCCTCTTCGTTCCAGCCAAAGGGAAGCAGCTCTGACCAAGTTCCGACTGAAGCGGAAAGATCGATGCTTTGAAAAAAAGGTCAGATACCAAAGCCGGAAAATACTAGCAGAGCAGCGGCCCCGGGTGAAAGGTCAGTTTGTGCACCGAGCACAAACTGATGCTCGAACTGCCAATGCTGTTGGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048511 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

686

Amino Acids

74.23

Weight (kDa)

5.85

Isoelectric Point (pI)

52.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	50 - 161	7.3e-19	Response regulator receiver domain
CCT	PF06203	630 - 671	6.1e-17	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46670 AT2G46790 AT2G46790 AT2G46790 AT2G46790 AT2G46790
fragaria_vesca	FvH4_7g17760 FvH4_7g17760 FvH4_7g17760 FvH4_7g17760 FvH4_7g17760
malus_domestica	MD01G1088900.v1.1
prunus_persica	Prupe.2G198500_v2.0.a1 Prupe.2G198500_v2.0.a1
pyrus_communis	pycom01g11320
rosa_chinensis	RchiOBHm_Chr1g0361151
rosa_laevigata	RLG00000027745
rosa_multiflora	Rmu_co8346237.1_g000001 Rmu_sc0000309.1_g000018 Rmu_sc0000427.1_g000034 Rmu_sc0001816.1_g000014 Rmu_sc0002872.1_g000001 Rmu_sc0006147.1_g000005 Rmu_sc0035862.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295360 Rroxscaffold_6G00419120
rosa_rugosa	Rorug01G0286500 Rorug01G0286500 Rorug01G0286500 Rorug01G0286500
rosa_samantha	Rh1AG206100 Rh1AG297800 Rh1BG261800 Rh1CG191000 Rh1CG279200 Rh1DG291700 Rh2BG478900 Rh2DG487700 Rh2DG555300 Rh3AG290400 Rh4AG103700 Rh4AG103800 Rh4CG112000
rosa_wichuraiana	Rw1G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	135
AccI	GTMKAC	1 cut(s)	1325
AccII	CGCG	2 cut(s)	178, 329
AccIII	TCCGGA	1 cut(s)	320
AciI	CCGC	6 cut(s)	72, 178, 466, 519, 1921, 1984
AclI	AACGTT	1 cut(s)	540
AclWI	GGATC	4 cut(s)	868, 1110, 1123, 1862
AcoI	YGGCCR	3 cut(s)	1058, 1618, 1788
AcsI	RAATTY	1 cut(s)	1534
AcuI	CTGAAG	2 cut(s)	1578, 1937
AcyI	GRCGYC	1 cut(s)	680
AfaI	GTAC	6 cut(s)	676, 707, 853, 873, 1102, 1603
AfiI	CCNNNNNNNGG	6 cut(s)	1022, 1224, 1400, 1485, 1685, 1887
AflIII	ACRYGT	1 cut(s)	357
AgeI	ACCGGT	1 cut(s)	526
AjnI	CCWGG	4 cut(s)	1311, 1369, 1644, 1669
Alw21I	GWGCWC	6 cut(s)	144, 526, 1110, 1516, 2013, 2020
Alw26I	GTCTC	4 cut(s)	32, 293, 1086, 1660
Alw44I	GTGCAC	2 cut(s)	522, 2009
AlwI	GGATC	4 cut(s)	868, 1110, 1123, 1862
Ama87I	CYCGRG	1 cut(s)	1989
Aor13HI	TCCGGA	1 cut(s)	320
AoxI	GGCC	5 cut(s)	1058, 1187, 1618, 1788, 1985
ApaLI	GTGCAC	2 cut(s)	522, 2009
ApeKI	GCWGC	8 cut(s)	191, 437, 475, 490, 614, 1427, 1895, 1981
ApoI	RAATTY	1 cut(s)	1534
ArsI	GACNNNNNNTTYG	2 cut(s)	830, 862
AsiGI	ACCGGT	1 cut(s)	526
AspLEI	GCGC	2 cut(s)	196, 331
AspS9I	GGNCC	2 cut(s)	1076, 1986
AsuC2I	CCSGG	3 cut(s)	146, 1990, 1991
AsuHPI	GGTGA	8 cut(s)	17, 38, 104, 121, 944, 1577, 1811, 2005
AvaI	CYCGRG	1 cut(s)	1989
AvaII	GGWCC	1 cut(s)	1076
BaeGI	GKGCMC	2 cut(s)	526, 2013
BaeI	ACNNNNGTAYC	2 cut(s)	1585, 1618
BalI	TGGCCA	2 cut(s)	1060, 1620
BamHI	GGATCC	1 cut(s)	1115
BanII	GRGCYC	1 cut(s)	786
Bbv12I	GWGCWC	6 cut(s)	144, 526, 1110, 1516, 2013, 2020
BbvI	GCAGC	8 cut(s)	178, 449, 462, 502, 626, 1414, 1907, 1993
BccI	CCATC	8 cut(s)	62, 230, 1091, 1151, 1280, 1381, 1456, 1798
BceAI	ACGGC	2 cut(s)	295, 1775
BciT130I	CCWGG	4 cut(s)	1313, 1371, 1646, 1671
BcnI	CCSGG	3 cut(s)	146, 1990, 1991
BcoDI	GTCTC	4 cut(s)	32, 293, 1086, 1660
BfaI	CTAG	3 cut(s)	405, 798, 1973
BfmI	CTRYAG	1 cut(s)	1699
BfuAI	ACCTGC	1 cut(s)	135
BglI	GCCNNNNNGGC	2 cut(s)	463, 1787
Bme1390I	CCNGG	7 cut(s)	146, 1313, 1371, 1646, 1671, 1990, 1991
Bme18I	GGWCC	1 cut(s)	1076
BmeT110I	CYCGRG	1 cut(s)	1989
BmgT120I	GGNCC	2 cut(s)	1076, 1986
BmiI	GGNNCC	6 cut(s)	531, 1045, 1078, 1117, 1392, 1988
BmrFI	CCNGG	7 cut(s)	146, 1313, 1371, 1646, 1671, 1990, 1991
BmrI	ACTGGG	1 cut(s)	1695
BmsI	GCATC	4 cut(s)	955, 1198, 1922, 2017
BmuI	ACTGGG	1 cut(s)	1695
BoxI	GACNNNNGTC	1 cut(s)	1833
BplI	GAGNNNNNCTC	2 cut(s)	1135, 1167
BpuEI	CTTGAG	2 cut(s)	770, 845
BpuMI	CCSGG	3 cut(s)	146, 1990, 1991
Bsa29I	ATCGAT	1 cut(s)	1930
BsaHI	GRCGYC	1 cut(s)	680
BsaI	GGTCTC	1 cut(s)	1660
BsaJI	CCNNGG	3 cut(s)	1329, 1988, 1989
BsaWI	WCCGGW	5 cut(s)	320, 526, 1019, 1337, 1796
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	6 cut(s)	1022, 1224, 1400, 1485, 1685, 1887
Bse118I	RCCGGY	1 cut(s)	526
Bse1I	ACTGG	6 cut(s)	807, 904, 951, 1011, 1134, 1690
Bse3DI	GCAATG	3 cut(s)	1413, 1513, 1720
BseAI	TCCGGA	1 cut(s)	320
BseBI	CCWGG	4 cut(s)	1313, 1371, 1646, 1671
BseCI	ATCGAT	1 cut(s)	1930
BseDI	CCNNGG	3 cut(s)	1329, 1988, 1989
BseGI	GGATG	6 cut(s)	73, 241, 1015, 1162, 1392, 1448
BseLI	CCNNNNNNNGG	6 cut(s)	1022, 1224, 1400, 1485, 1685, 1887
BseMI	GCAATG	3 cut(s)	1413, 1513, 1720
BseMII	CTCAG	7 cut(s)	384, 687, 925, 1338, 1584, 1655, 1806
BseNI	ACTGG	6 cut(s)	807, 904, 951, 1011, 1134, 1690
BseRI	GAGGAG	2 cut(s)	90, 1875
BseSI	GKGCMC	2 cut(s)	526, 2013
BseXI	GCAGC	8 cut(s)	178, 449, 462, 502, 626, 1414, 1907, 1993
BseYI	CCCAGC	3 cut(s)	114, 1261, 1400
BsgI	GTGCAG	1 cut(s)	456
Bsh1236I	CGCG	2 cut(s)	178, 329
BshFI	GGCC	5 cut(s)	1060, 1189, 1620, 1790, 1987
BshTI	ACCGGT	1 cut(s)	526
BshVI	ATCGAT	1 cut(s)	1930
BsiHKAI	GWGCWC	6 cut(s)	144, 526, 1110, 1516, 2013, 2020
BsiHKCI	CYCGRG	1 cut(s)	1989
BsiSI	CCGG	9 cut(s)	145, 321, 527, 1020, 1074, 1338, 1797, 1963, 1990
BslI	CCNNNNNNNGG	6 cut(s)	1022, 1224, 1400, 1485, 1685, 1887
BsmAI	GTCTC	4 cut(s)	32, 293, 1086, 1660
BsmBI	CGTCTC	2 cut(s)	293, 1086
BsmI	GAATGC	1 cut(s)	644
BsnI	GGCC	5 cut(s)	1060, 1189, 1620, 1790, 1987
Bso31I	GGTCTC	1 cut(s)	1660
BsoBI	CYCGRG	1 cut(s)	1989
Bsp1286I	GDGCHC	7 cut(s)	144, 526, 786, 1110, 1516, 2013, 2020
Bsp13I	TCCGGA	1 cut(s)	320
Bsp143I	GATC	5 cut(s)	183, 860, 1115, 1867, 1927
BspACI	CCGC	6 cut(s)	72, 178, 466, 519, 1921, 1984
BspANI	GGCC	5 cut(s)	1060, 1189, 1620, 1790, 1987
BspCNI	CTCAG	7 cut(s)	385, 688, 924, 1339, 1583, 1656, 1807
BspDI	ATCGAT	1 cut(s)	1930
BspEI	TCCGGA	1 cut(s)	320
BspFNI	CGCG	2 cut(s)	178, 329
BspHI	TCATGA	1 cut(s)	1846
BspLI	GGNNCC	6 cut(s)	531, 1045, 1078, 1117, 1392, 1988
BspMI	ACCTGC	1 cut(s)	135
BspPI	GGATC	4 cut(s)	868, 1110, 1123, 1862
BspTNI	GGTCTC	1 cut(s)	1660
BsrDI	GCAATG	3 cut(s)	1413, 1513, 1720
BsrFI	RCCGGY	1 cut(s)	526
BsrI	ACTGG	6 cut(s)	807, 904, 951, 1011, 1134, 1690
BssAI	RCCGGY	1 cut(s)	526
BssECI	CCNNGG	3 cut(s)	1329, 1988, 1989
BssMI	GATC	5 cut(s)	183, 860, 1115, 1867, 1927
BssNI	GRCGYC	1 cut(s)	680
BssT1I	CCWWGG	1 cut(s)	1329
Bst2UI	CCWGG	4 cut(s)	1313, 1371, 1646, 1671
Bst4CI	ACNGT	4 cut(s)	43, 1436, 1627, 1832
Bst6I	CTCTTC	1 cut(s)	1878
BstACI	GRCGYC	1 cut(s)	680
BstAPI	GCANNNNNTGC	1 cut(s)	718
BstC8I	GCNNGC	3 cut(s)	425, 1504, 1680
BstDEI	CTNAG	7 cut(s)	393, 696, 911, 1347, 1570, 1664, 1815
BstF5I	GGATG	6 cut(s)	73, 241, 1015, 1162, 1392, 1448
BstFNI	CGCG	2 cut(s)	178, 329
BstHHI	GCGC	2 cut(s)	196, 331
BstKTI	GATC	5 cut(s)	186, 863, 1118, 1870, 1930
BstMAI	GTCTC	4 cut(s)	32, 293, 1086, 1660
BstMBI	GATC	5 cut(s)	183, 860, 1115, 1867, 1927
BstMWI	GCNNNNNNNGC	8 cut(s)	78, 120, 463, 472, 701, 718, 1787, 2036
BstNI	CCWGG	4 cut(s)	1313, 1371, 1646, 1671
BstNSI	RCATGY	4 cut(s)	361, 427, 497, 712
BstPAI	GACNNNNGTC	1 cut(s)	1833
BstSCI	CCNGG	7 cut(s)	144, 1311, 1369, 1644, 1669, 1988, 1989
BstSFI	CTRYAG	1 cut(s)	1699
BstSLI	GKGCMC	2 cut(s)	526, 2013
BstUI	CGCG	2 cut(s)	178, 329
BstV1I	GCAGC	8 cut(s)	178, 449, 462, 502, 626, 1414, 1907, 1993
BstX2I	RGATCY	1 cut(s)	1115
BstYI	RGATCY	1 cut(s)	1115
Bsu15I	ATCGAT	1 cut(s)	1930
BsuRI	GGCC	5 cut(s)	1060, 1189, 1620, 1790, 1987
BsuTUI	ATCGAT	1 cut(s)	1930
BtgZI	GCGATG	1 cut(s)	172
BtsCI	GGATG	6 cut(s)	73, 241, 1015, 1162, 1392, 1448
BtsI	GCAGTG	4 cut(s)	88, 649, 1068, 1747
BtsIMutI	CAGTG	5 cut(s)	88, 649, 1068, 1747, 1837
BveI	ACCTGC	1 cut(s)	135
Cac8I	GCNNGC	3 cut(s)	425, 1504, 1680
CciI	TCATGA	1 cut(s)	1846
CfoI	GCGC	2 cut(s)	196, 331
Cfr10I	RCCGGY	1 cut(s)	526
Cfr13I	GGNCC	2 cut(s)	1076, 1986
Cfr9I	CCCGGG	1 cut(s)	1989
ClaI	ATCGAT	1 cut(s)	1930
CseI	GACGC	2 cut(s)	184, 688
CsiI	ACCWGGT	1 cut(s)	1669
Csp6I	GTAC	6 cut(s)	675, 706, 852, 872, 1101, 1602
CspAI	ACCGGT	1 cut(s)	526
CviQI	GTAC	6 cut(s)	675, 706, 852, 872, 1101, 1602
DdeI	CTNAG	7 cut(s)	393, 696, 911, 1347, 1570, 1664, 1815
DpnI	GATC	5 cut(s)	185, 862, 1117, 1869, 1929
DpnII	GATC	5 cut(s)	183, 860, 1115, 1867, 1927
EaeI	YGGCCR	3 cut(s)	1058, 1618, 1788
Eam1104I	CTCTTC	1 cut(s)	1878
EarI	CTCTTC	1 cut(s)	1878
EciI	GGCGGA	2 cut(s)	87, 481
Eco130I	CCWWGG	1 cut(s)	1329
Eco147I	AGGCCT	1 cut(s)	1189
Eco24I	GRGCYC	1 cut(s)	786
Eco31I	GGTCTC	1 cut(s)	1660
Eco47I	GGWCC	1 cut(s)	1076
Eco57I	CTGAAG	2 cut(s)	1578, 1937
Eco88I	CYCGRG	1 cut(s)	1989
EcoRI	GAATTC	1 cut(s)	1534
EcoRII	CCWGG	4 cut(s)	1311, 1369, 1644, 1669
EcoT14I	CCWWGG	1 cut(s)	1329
EcoT22I	ATGCAT	1 cut(s)	425
EcoT38I	GRGCYC	1 cut(s)	786
ErhI	CCWWGG	1 cut(s)	1329
Esp3I	CGTCTC	2 cut(s)	293, 1086
FalI	AAGNNNNNCTT	2 cut(s)	1313, 1345
FauNDI	CATATG	1 cut(s)	865
FblI	GTMKAC	1 cut(s)	1325
FokI	GGATG	6 cut(s)	80, 248, 1022, 1169, 1399, 1435
FriOI	GRGCYC	1 cut(s)	786
FspBI	CTAG	3 cut(s)	405, 798, 1973
GlaI	GCGC	2 cut(s)	195, 330
GsaI	CCCAGC	3 cut(s)	118, 1265, 1404
HaeIII	GGCC	5 cut(s)	1060, 1189, 1620, 1790, 1987
HapII	CCGG	9 cut(s)	145, 321, 527, 1020, 1074, 1338, 1797, 1963, 1990
HgaI	GACGC	2 cut(s)	184, 688
HhaI	GCGC	2 cut(s)	196, 331
Hin1I	GRCGYC	1 cut(s)	680
Hin6I	GCGC	2 cut(s)	194, 329
HinP1I	GCGC	2 cut(s)	194, 329
HinfI	GANTC	6 cut(s)	95, 170, 324, 398, 812, 909
HpaII	CCGG	9 cut(s)	145, 321, 527, 1020, 1074, 1338, 1797, 1963, 1990
HphI	GGTGA	8 cut(s)	17, 38, 104, 121, 944, 1577, 1811, 2005
Hpy166II	GTNNAC	6 cut(s)	524, 596, 1326, 1564, 1745, 2011
Hpy188III	TCNNGA	5 cut(s)	321, 415, 1154, 1556, 1847
Hpy8I	GTNNAC	6 cut(s)	524, 596, 1326, 1564, 1745, 2011
Hpy99I	CGWCG	3 cut(s)	178, 316, 682
HpyAV	CCTTC	6 cut(s)	238, 498, 874, 878, 929, 1571
HpyCH4III	ACNGT	4 cut(s)	43, 1436, 1627, 1832
HpyCH4IV	ACGT	4 cut(s)	60, 338, 540, 1244
HpyF10VI	GCNNNNNNNGC	8 cut(s)	78, 120, 463, 472, 701, 718, 1787, 2036
HpyF3I	CTNAG	7 cut(s)	393, 696, 911, 1347, 1570, 1664, 1815
HpySE526I	ACGT	4 cut(s)	60, 338, 540, 1244
Hsp92I	GRCGYC	1 cut(s)	680
HspAI	GCGC	2 cut(s)	194, 329
Kpn2I	TCCGGA	1 cut(s)	320
Kzo9I	GATC	5 cut(s)	183, 860, 1115, 1867, 1927
LmnI	GCTCC	6 cut(s)	147, 336, 1025, 1511, 1648, 1862
Lsp1109I	GCAGC	8 cut(s)	178, 449, 462, 502, 626, 1414, 1907, 1993
LweI	GCATC	4 cut(s)	955, 1198, 1922, 2017
MabI	ACCWGGT	1 cut(s)	1669
MaeI	CTAG	3 cut(s)	405, 798, 1973
MaeII	ACGT	4 cut(s)	60, 338, 540, 1244
MaeIII	GTNAC	6 cut(s)	212, 479, 547, 608, 953, 1583
MalI	GATC	5 cut(s)	185, 862, 1117, 1869, 1929
MboI	GATC	5 cut(s)	183, 860, 1115, 1867, 1927
MboII	GAAGA	2 cut(s)	1586, 1865
MfeI	CAATTG	1 cut(s)	1756
MflI	RGATCY	1 cut(s)	1115
MhlI	GDGCHC	7 cut(s)	144, 526, 786, 1110, 1516, 2013, 2020
MlsI	TGGCCA	2 cut(s)	1060, 1620
MluCI	AATT	4 cut(s)	757, 1054, 1534, 1756
MluNI	TGGCCA	2 cut(s)	1060, 1620
MlyI	GAGTC	1 cut(s)	903
MmeI	TCCRAC	1 cut(s)	1936
Mox20I	TGGCCA	2 cut(s)	1060, 1620
Mph1103I	ATGCAT	1 cut(s)	425
MroI	TCCGGA	1 cut(s)	320
MscI	TGGCCA	2 cut(s)	1060, 1620
MseI	TTAA	6 cut(s)	293, 453, 543, 761, 905, 1475
MslI	CAYNNNNRTG	4 cut(s)	374, 519, 603, 1206
Msp20I	TGGCCA	2 cut(s)	1060, 1620
MspA1I	CMGCKG	2 cut(s)	440, 1984
MspI	CCGG	9 cut(s)	145, 321, 527, 1020, 1074, 1338, 1797, 1963, 1990
MspR9I	CCNGG	7 cut(s)	146, 1313, 1371, 1646, 1671, 1990, 1991
MunI	CAATTG	1 cut(s)	1756
Mva1269I	GAATGC	1 cut(s)	644
MvaI	CCWGG	4 cut(s)	1313, 1371, 1646, 1671
MvnI	CGCG	2 cut(s)	178, 329
MwoI	GCNNNNNNNGC	8 cut(s)	78, 120, 463, 472, 701, 718, 1787, 2036
NciI	CCSGG	3 cut(s)	146, 1990, 1991
NdeI	CATATG	1 cut(s)	865
NdeII	GATC	5 cut(s)	183, 860, 1115, 1867, 1927
NlaIV	GGNNCC	6 cut(s)	531, 1045, 1078, 1117, 1392, 1988
NmuCI	GTSAC	1 cut(s)	1583
NsiI	ATGCAT	1 cut(s)	425
NspI	RCATGY	4 cut(s)	361, 427, 497, 712
PaeI	GCATGC	1 cut(s)	427
PagI	TCATGA	1 cut(s)	1846
PceI	AGGCCT	1 cut(s)	1189
PciI	ACATGT	1 cut(s)	357
PcsI	WCGNNNNNNNCGW	1 cut(s)	308
PctI	GAATGC	1 cut(s)	644
PfeI	GAWTC	5 cut(s)	95, 170, 324, 398, 812
PinAI	ACCGGT	1 cut(s)	526
PleI	GAGTC	1 cut(s)	903
PpsI	GAGTC	1 cut(s)	903
PscI	ACATGT	1 cut(s)	357
PshAI	GACNNNNGTC	1 cut(s)	1833
Psp1406I	AACGTT	1 cut(s)	540
Psp6I	CCWGG	4 cut(s)	1311, 1369, 1644, 1669
PspFI	CCCAGC	3 cut(s)	114, 1261, 1400
PspGI	CCWGG	4 cut(s)	1311, 1369, 1644, 1669
PspN4I	GGNNCC	6 cut(s)	531, 1045, 1078, 1117, 1392, 1988
PspPI	GGNCC	2 cut(s)	1076, 1986
PsuI	RGATCY	1 cut(s)	1115
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	6 cut(s)	676, 707, 853, 873, 1102, 1603
RsaNI	GTAC	6 cut(s)	675, 706, 852, 872, 1101, 1602
RseI	CAYNNNNRTG	4 cut(s)	374, 519, 603, 1206
SaqAI	TTAA	6 cut(s)	293, 453, 543, 761, 905, 1475
Sau3AI	GATC	5 cut(s)	183, 860, 1115, 1867, 1927
Sau96I	GGNCC	2 cut(s)	1076, 1986
SchI	GAGTC	1 cut(s)	903
ScrFI	CCNGG	7 cut(s)	146, 1313, 1371, 1646, 1671, 1990, 1991
SduI	GDGCHC	7 cut(s)	144, 526, 786, 1110, 1516, 2013, 2020
SexAI	ACCWGGT	1 cut(s)	1669
SfaNI	GCATC	4 cut(s)	955, 1198, 1922, 2017
SfcI	CTRYAG	1 cut(s)	1699
SinI	GGWCC	1 cut(s)	1076
SmaI	CCCGGG	1 cut(s)	1991
SmiMI	CAYNNNNRTG	4 cut(s)	374, 519, 603, 1206
SmlI	CTYRAG	2 cut(s)	785, 824
SmoI	CTYRAG	2 cut(s)	785, 824
SphI	GCATGC	1 cut(s)	427
Sse9I	AATT	4 cut(s)	757, 1054, 1534, 1756
SseBI	AGGCCT	1 cut(s)	1189
SsiI	CCGC	6 cut(s)	72, 178, 466, 519, 1921, 1984
SspI	AATATT	1 cut(s)	1420
SspMI	CTAG	3 cut(s)	405, 798, 1973
StuI	AGGCCT	1 cut(s)	1189
StyD4I	CCNGG	7 cut(s)	144, 1311, 1369, 1644, 1669, 1988, 1989
StyI	CCWWGG	1 cut(s)	1329
TaaI	ACNGT	4 cut(s)	43, 1436, 1627, 1832
TaiI	ACGT	4 cut(s)	63, 341, 543, 1247
TaqI	TCGA	4 cut(s)	173, 314, 1930, 2032
TasI	AATT	4 cut(s)	757, 1054, 1534, 1756
TauI	GCSGC	2 cut(s)	181, 1987
TfiI	GAWTC	5 cut(s)	95, 170, 324, 398, 812
Tru1I	TTAA	6 cut(s)	293, 453, 543, 761, 905, 1475
Tru9I	TTAA	6 cut(s)	293, 453, 543, 761, 905, 1475
TscAI	CASTG	5 cut(s)	88, 649, 1075, 1747, 1837
TseFI	GTSAC	1 cut(s)	1583
TseI	GCWGC	8 cut(s)	191, 437, 475, 490, 614, 1427, 1895, 1981
Tsp45I	GTSAC	1 cut(s)	1583
TspDTI	ATGAA	7 cut(s)	791, 1026, 1190, 1197, 1212, 1448, 1835
TspGWI	ACGGA	1 cut(s)	317
TspMI	CCCGGG	1 cut(s)	1989
TspRI	CASTG	5 cut(s)	88, 649, 1075, 1747, 1837
VneI	GTGCAC	2 cut(s)	522, 2009
VpaK11BI	GGWCC	1 cut(s)	1076
XapI	RAATTY	1 cut(s)	1534
XceI	RCATGY	4 cut(s)	361, 427, 497, 712
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1126
XmaI	CCCGGG	1 cut(s)	1989
XmiI	GTMKAC	1 cut(s)	1325
XspI	CTAG	3 cut(s)	405, 798, 1973
Zsp2I	ATGCAT	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.