Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002067

Physical Location & Seq

Genomic Coordinates Forward (+)

41523719 .. 41532503

Gene Structure 8785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG191000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGACAAACGAGGGCAGAATCATTCTGTCTATTCTTGCTCTGATACCAGACGGTGTTTGGAAGAGGTTGGCTGCAGTGCTTGGTATTCGAGCGTTGAGTGGTGGTGGTCCTATGCGGGCGAAGCTTTCTAGTGGATGTGTTGGGTACAATTTTGGTCTTCTGGAGCAGTCAAGGCTGCTGGTGTCGTTGAAACTTTCATGGTTCAGTGATGCCCAAGATATATCGCAGCTAAAGTATGGCAGTGCTTCTAATTTGAGCAATACAGATATTGAAATGCTTGAAGATTGTGATAGATTGGACAATGAATCTGTTGTGCATGAGAGTGAAACTAAAGAGAATTCAAGTACATTTGGGTCAGATATTGTACCTTTGGATGAAGCCCTTAACTTAGTTGCCTCAAGACTGAGAGAGGAAAATGTTTCTGCTAAAACAATGGTTCAAGATGAAGGTATCCAAGCAGAAATTTGTGAAGAAAAAGCTAAAACTGCTAGTGGAACTCACAGCTTCCAATATGAGGTTGAACCGTCAGTTGGGGTTAGGGACTTGCTTTGCACCTTTGACAATTGGCCCAACTGCAACGTTGGAAGTTCTAACAGAAAAGATGATGGAGGCAAGAGCTGTCGAGAAGAGAAAAGAAAAAGAGTATACAGGACATATAAGGACAATGAGTTGGTTCGGTTGAAGCGTGAAGCAAGGCTGAAAGGAGGATTCTATGTCAAGCCAGAGTCTAAACTTTCGTTTATCATTCGTATCCATGGTATCAATGCCATTGATCCAAAGACAAAGAAGATCTTGCAACTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048511 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

268

Amino Acids

29.83

Weight (kDa)

6.85

Isoelectric Point (pI)

35.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46670 AT2G46790 AT2G46790 AT2G46790 AT2G46790 AT2G46790
fragaria_vesca	FvH4_7g17760 FvH4_7g17760 FvH4_7g17760 FvH4_7g17760 FvH4_7g17760
malus_domestica	MD01G1088900.v1.1
prunus_persica	Prupe.2G198500_v2.0.a1 Prupe.2G198500_v2.0.a1
pyrus_communis	pycom01g11320
rosa_chinensis	RchiOBHm_Chr1g0361151
rosa_laevigata	RLG00000027745
rosa_multiflora	Rmu_co8346237.1_g000001 Rmu_sc0000309.1_g000018 Rmu_sc0000427.1_g000034 Rmu_sc0001816.1_g000014 Rmu_sc0002872.1_g000001 Rmu_sc0006147.1_g000005 Rmu_sc0035862.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295360 Rroxscaffold_6G00419120
rosa_rugosa	Rorug01G0286500 Rorug01G0286500 Rorug01G0286500 Rorug01G0286500
rosa_samantha	Rh1AG206100 Rh1AG297800 Rh1BG261800 Rh1CG191000 Rh1CG279200 Rh1DG291700 Rh2BG478900 Rh2DG487700 Rh2DG555300 Rh3AG290400 Rh4AG103700 Rh4AG103800 Rh4CG112000
rosa_wichuraiana	Rw1G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	645
AciI	CCGC	1 cut(s)	115
AclI	AACGTT	1 cut(s)	579
AclWI	GGATC	1 cut(s)	767
AcsI	RAATTY	2 cut(s)	337, 462
AfaI	GTAC	3 cut(s)	146, 346, 366
AfiI	CCNNNNNNNGG	2 cut(s)	514, 530
AgsI	TTSAA	7 cut(s)	190, 272, 281, 342, 440, 521, 682
AjuI	GAANNNNNNNTTGG	2 cut(s)	513, 545
AluBI	AGCT	5 cut(s)	124, 229, 479, 504, 618
AluI	AGCT	5 cut(s)	124, 229, 479, 504, 618
AlwI	GGATC	1 cut(s)	767
AoxI	GGCC	1 cut(s)	566
ApeKI	GCWGC	3 cut(s)	71, 175, 226
ApoI	RAATTY	2 cut(s)	337, 462
AspS9I	GGNCC	2 cut(s)	107, 567
AvaII	GGWCC	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	149
BbvI	GCAGC	3 cut(s)	58, 162, 238
BccI	CCATC	1 cut(s)	599
BciVI	GTATCC	2 cut(s)	461, 761
BfaI	CTAG	2 cut(s)	129, 489
BfmI	CTRYAG	1 cut(s)	72
BfuI	GTATCC	2 cut(s)	461, 761
BglII	AGATCT	1 cut(s)	789
BisI	GCNGC	3 cut(s)	72, 176, 227
BlsI	GCNGC	3 cut(s)	73, 177, 228
Bme18I	GGWCC	1 cut(s)	107
BmgT120I	GGNCC	2 cut(s)	107, 567
BmsI	GCATC	1 cut(s)	199
BpiI	GAAGAC	1 cut(s)	149
BpmI	CTGGAG	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	382
BsaJI	CCNNGG	1 cut(s)	754
Bsc4I	CCNNNNNNNGG	2 cut(s)	514, 530
BseDI	CCNNGG	1 cut(s)	754
BseGI	GGATG	2 cut(s)	140, 379
BseLI	CCNNNNNNNGG	2 cut(s)	514, 530
BseMII	CTCAG	1 cut(s)	395
BseXI	GCAGC	3 cut(s)	58, 162, 238
BshFI	GGCC	1 cut(s)	568
BslFI	GGGAC	1 cut(s)	554
BslI	CCNNNNNNNGG	2 cut(s)	514, 530
BsmFI	GGGAC	1 cut(s)	554
BsnI	GGCC	1 cut(s)	568
Bsp143I	GATC	2 cut(s)	772, 789
Bsp19I	CCATGG	1 cut(s)	754
BspACI	CCGC	1 cut(s)	115
BspANI	GGCC	1 cut(s)	568
BspCNI	CTCAG	1 cut(s)	396
BspMAI	CTGCAG	1 cut(s)	76
BspPI	GGATC	1 cut(s)	767
BssECI	CCNNGG	1 cut(s)	754
BssMI	GATC	2 cut(s)	772, 789
BssNAI	GTATAC	1 cut(s)	646
BssT1I	CCWWGG	1 cut(s)	754
Bst1107I	GTATAC	1 cut(s)	646
Bst4CI	ACNGT	2 cut(s)	53, 525
Bst6I	CTCTTC	2 cut(s)	56, 621
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	2 cut(s)	388, 404
BstDSI	CCRYGG	1 cut(s)	754
BstF5I	GGATG	2 cut(s)	140, 379
BstKTI	GATC	2 cut(s)	775, 792
BstMBI	GATC	2 cut(s)	772, 789
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 172, 485
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	3 cut(s)	58, 162, 238
BstV2I	GAAGAC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	789
BstYI	RGATCY	1 cut(s)	789
BstZ17I	GTATAC	1 cut(s)	646
BsuI	GTATCC	2 cut(s)	461, 761
BsuRI	GGCC	1 cut(s)	568
BtgI	CCRYGG	1 cut(s)	754
BtsCI	GGATG	2 cut(s)	140, 379
BtsI	GCAGTG	2 cut(s)	81, 247
BtsIMutI	CAGTG	3 cut(s)	81, 211, 247
Cac8I	GCNNGC	1 cut(s)	117
Cfr13I	GGNCC	2 cut(s)	107, 567
Csp6I	GTAC	3 cut(s)	145, 345, 365
CviAII	CATG	3 cut(s)	198, 317, 755
CviQI	GTAC	3 cut(s)	145, 345, 365
DdeI	CTNAG	2 cut(s)	388, 404
DpnI	GATC	2 cut(s)	774, 791
DpnII	GATC	2 cut(s)	772, 789
Eam1104I	CTCTTC	2 cut(s)	56, 621
EarI	CTCTTC	2 cut(s)	56, 621
Eco130I	CCWWGG	1 cut(s)	754
Eco47I	GGWCC	1 cut(s)	107
EcoRI	GAATTC	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	754
ErhI	CCWWGG	1 cut(s)	754
FaeI	CATG	3 cut(s)	201, 320, 758
FalI	AAGNNNNNCTT	1 cut(s)	776
FaqI	GGGAC	1 cut(s)	554
FatI	CATG	3 cut(s)	197, 316, 754
FauI	CCCGC	1 cut(s)	108
FblI	GTMKAC	1 cut(s)	645
Fnu4HI	GCNGC	3 cut(s)	72, 176, 227
FokI	GGATG	2 cut(s)	147, 386
Fsp4HI	GCNGC	3 cut(s)	72, 176, 227
FspBI	CTAG	2 cut(s)	129, 489
GluI	GCNGC	3 cut(s)	72, 176, 227
GsuI	CTGGAG	1 cut(s)	182
HaeIII	GGCC	1 cut(s)	568
Hin1II	CATG	3 cut(s)	201, 320, 758
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	4 cut(s)	18, 305, 708, 725
Hpy166II	GTNNAC	1 cut(s)	646
Hpy188I	TCNGA	2 cut(s)	42, 358
Hpy188III	TCNNGA	4 cut(s)	161, 399, 440, 623
Hpy8I	GTNNAC	1 cut(s)	646
HpyAV	CCTTC	1 cut(s)	440
HpyCH4III	ACNGT	2 cut(s)	53, 525
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	5 cut(s)	74, 316, 552, 576, 796
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 172, 485
HpyF3I	CTNAG	2 cut(s)	388, 404
HpySE526I	ACGT	1 cut(s)	579
Hsp92II	CATG	3 cut(s)	201, 320, 758
Kzo9I	GATC	2 cut(s)	772, 789
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	5 cut(s)	60, 146, 164, 634, 735
Lsp1109I	GCAGC	3 cut(s)	58, 162, 238
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	2 cut(s)	129, 489
MaeII	ACGT	1 cut(s)	579
MalI	GATC	2 cut(s)	774, 791
MboI	GATC	2 cut(s)	772, 789
MboII	GAAGA	6 cut(s)	73, 149, 293, 482, 638, 799
MfeI	CAATTG	1 cut(s)	562
MflI	RGATCY	1 cut(s)	789
MluCI	AATT	5 cut(s)	148, 250, 337, 462, 562
MlyI	GAGTC	1 cut(s)	734
MmeI	TCCRAC	1 cut(s)	562
MnlI	CCTC	7 cut(s)	4, 57, 403, 406, 508, 602, 698
MseI	TTAA	1 cut(s)	384
MslI	CAYNNNNRTG	1 cut(s)	321
MunI	CAATTG	1 cut(s)	562
MwoI	GCNNNNNNNGC	3 cut(s)	121, 172, 485
NcoI	CCATGG	1 cut(s)	754
NdeII	GATC	2 cut(s)	772, 789
NlaIII	CATG	3 cut(s)	201, 320, 758
PcsI	WCGNNNNNNNCGW	1 cut(s)	682
PfeI	GAWTC	3 cut(s)	18, 305, 708
PkrI	GCNGC	3 cut(s)	73, 177, 228
PleI	GAGTC	1 cut(s)	733
PpsI	GAGTC	1 cut(s)	733
Psp1406I	AACGTT	1 cut(s)	579
PspPI	GGNCC	2 cut(s)	107, 567
PstI	CTGCAG	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	789
RsaI	GTAC	3 cut(s)	146, 346, 366
RsaNI	GTAC	3 cut(s)	145, 345, 365
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	3 cut(s)	72, 176, 227
Sau3AI	GATC	2 cut(s)	772, 789
Sau96I	GGNCC	2 cut(s)	107, 567
SchI	GAGTC	1 cut(s)	734
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	72
SinI	GGWCC	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	397
SmoI	CTYRAG	1 cut(s)	397
Sse9I	AATT	5 cut(s)	148, 250, 337, 462, 562
SsiI	CCGC	1 cut(s)	115
SspMI	CTAG	2 cut(s)	129, 489
StyI	CCWWGG	1 cut(s)	754
TaaI	ACNGT	2 cut(s)	53, 525
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	2 cut(s)	88, 622
TasI	AATT	5 cut(s)	148, 250, 337, 462, 562
TatI	WGTACW	1 cut(s)	344
TfiI	GAWTC	3 cut(s)	18, 305, 708
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	3 cut(s)	81, 211, 247
TseI	GCWGC	3 cut(s)	71, 175, 226
TspDTI	ATGAA	4 cut(s)	186, 318, 390, 459
TspRI	CASTG	3 cut(s)	81, 211, 247
VpaK11BI	GGWCC	1 cut(s)	107
XapI	RAATTY	2 cut(s)	337, 462
XcmI	CCANNNNNNNNNTGG	1 cut(s)	54
XmiI	GTMKAC	1 cut(s)	645
XspI	CTAG	2 cut(s)	129, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.