Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000309.1

Orthogroup ID

OG0002067

Physical Location & Seq

Genomic Coordinates Reverse (-)

75637 .. 77080

Gene Structure 1444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000309.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgcagaagatgttgaagtgccattgttttgcattgaaacttgctctttcaactcagaaaatccagaaagaaagcatggactatctagcttcatttaggcaaagtgcgggctatctatctagtgaggttgaacagtcagttggggtcagggacttgctttgcacctttgacaattggcccaactgcaacgttggaagttctaacagaaaagatgatggtatgaagcactttggattggaactgtctttaagaagttcggatggttcacacaaggaagtgactgaggagaggcctgcactgaaacattctgatgcctctaccttttcacggattggaagaaatgttctcttaaaagaaaagcagttactcaaagctaagttgtgcataaacatagaagggcaaaggaggcatggtgaaaaagaaaaggagaggagagagggcaaagaaagacgggacgacagggattttaaccatgatggcagaagggacttcaacatgcagcgttttccacacaaatggaaatccactcgtagaagtgaagacgtacttagctgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048511 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

185

Amino Acids

21.53

Weight (kDa)

9.37

Isoelectric Point (pI)

61.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46670 AT2G46790 AT2G46790 AT2G46790 AT2G46790 AT2G46790
fragaria_vesca	FvH4_7g17760 FvH4_7g17760 FvH4_7g17760 FvH4_7g17760 FvH4_7g17760
malus_domestica	MD01G1088900.v1.1
prunus_persica	Prupe.2G198500_v2.0.a1 Prupe.2G198500_v2.0.a1
pyrus_communis	pycom01g11320
rosa_chinensis	RchiOBHm_Chr1g0361151
rosa_laevigata	RLG00000027745
rosa_multiflora	Rmu_co8346237.1_g000001 Rmu_sc0000309.1_g000018 Rmu_sc0000427.1_g000034 Rmu_sc0001816.1_g000014 Rmu_sc0002872.1_g000001 Rmu_sc0006147.1_g000005 Rmu_sc0035862.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295360 Rroxscaffold_6G00419120
rosa_rugosa	Rorug01G0286500 Rorug01G0286500 Rorug01G0286500 Rorug01G0286500
rosa_samantha	Rh1AG206100 Rh1AG297800 Rh1BG261800 Rh1CG191000 Rh1CG279200 Rh1DG291700 Rh2BG478900 Rh2DG487700 Rh2DG555300 Rh3AG290400 Rh4AG103700 Rh4AG103800 Rh4CG112000
rosa_wichuraiana	Rw1G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	107
AclI	AACGTT	1 cut(s)	189
AfaI	GTAC	1 cut(s)	546
AfiI	CCNNNNNNNGG	1 cut(s)	327
AgsI	TTSAA	5 cut(s)	16, 37, 51, 131, 493
AjuI	GAANNNNNNNTTGG	2 cut(s)	123, 155
AloI	GAACNNNNNNTCC	2 cut(s)	327, 359
AluBI	AGCT	3 cut(s)	89, 374, 552
AluI	AGCT	3 cut(s)	89, 374, 552
AoxI	GGCC	2 cut(s)	176, 290
ApeKI	GCWGC	2 cut(s)	499, 552
AspS9I	GGNCC	1 cut(s)	177
AsuHPI	GGTGA	1 cut(s)	425
BbsI	GAAGAC	1 cut(s)	546
BbvI	GCAGC	2 cut(s)	511, 539
BccI	CCATC	3 cut(s)	209, 254, 470
BfaI	CTAG	2 cut(s)	86, 120
BisI	GCNGC	2 cut(s)	500, 553
BlsI	GCNGC	2 cut(s)	501, 554
BmgT120I	GGNCC	1 cut(s)	177
BmsI	GCATC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	546
BsaXI	ACNNNNNCTCC	2 cut(s)	397, 427
Bsc4I	CCNNNNNNNGG	1 cut(s)	327
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	1 cut(s)	327
BseMII	CTCAG	2 cut(s)	68, 273
BseRI	GAGGAG	2 cut(s)	299, 445
BseXI	GCAGC	2 cut(s)	511, 539
BsgI	GTGCAG	1 cut(s)	279
BshFI	GGCC	2 cut(s)	178, 292
BslFI	GGGAC	3 cut(s)	164, 467, 500
BslI	CCNNNNNNNGG	1 cut(s)	327
BsmFI	GGGAC	3 cut(s)	164, 467, 500
BsnI	GGCC	2 cut(s)	178, 292
BspACI	CCGC	1 cut(s)	107
BspANI	GGCC	2 cut(s)	178, 292
BspCNI	CTCAG	2 cut(s)	67, 274
Bst4CI	ACNGT	2 cut(s)	135, 243
BstC8I	GCNNGC	2 cut(s)	109, 294
BstDEI	CTNAG	4 cut(s)	54, 282, 375, 548
BstF5I	GGATG	1 cut(s)	265
BstMWI	GCNNNNNNNGC	1 cut(s)	406
BstNSI	RCATGY	1 cut(s)	499
BstV1I	GCAGC	2 cut(s)	511, 539
BstV2I	GAAGAC	1 cut(s)	546
BstXI	CCANNNNNNTGG	1 cut(s)	516
BsuRI	GGCC	2 cut(s)	178, 292
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	296
Cac8I	GCNNGC	2 cut(s)	109, 294
Cfr13I	GGNCC	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	545
CviAII	CATG	4 cut(s)	76, 410, 473, 496
CviJI	RGCY	6 cut(s)	89, 111, 178, 292, 374, 552
CviKI_1	RGCY	6 cut(s)	89, 111, 178, 292, 374, 552
CviQI	GTAC	1 cut(s)	545
DdeI	CTNAG	4 cut(s)	54, 282, 375, 548
Eco147I	AGGCCT	1 cut(s)	292
FaeI	CATG	4 cut(s)	79, 413, 476, 499
FaiI	YATR	7 cut(s)	77, 221, 386, 392, 411, 474, 497
FalI	AAGNNNNNCTT	1 cut(s)	531
FaqI	GGGAC	3 cut(s)	164, 467, 500
FatI	CATG	4 cut(s)	75, 409, 472, 495
FauI	CCCGC	1 cut(s)	100
Fnu4HI	GCNGC	2 cut(s)	500, 553
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	2 cut(s)	500, 553
FspBI	CTAG	2 cut(s)	86, 120
GluI	GCNGC	2 cut(s)	500, 553
HaeIII	GGCC	2 cut(s)	178, 292
Hin1II	CATG	4 cut(s)	79, 413, 476, 499
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	1 cut(s)	266
Hpy188I	TCNGA	3 cut(s)	57, 259, 310
Hpy188III	TCNNGA	1 cut(s)	64
Hpy8I	GTNNAC	1 cut(s)	266
HpyAV	CCTTC	2 cut(s)	389, 477
HpyCH4III	ACNGT	2 cut(s)	135, 243
HpyCH4IV	ACGT	2 cut(s)	189, 543
HpyCH4V	TGCA	7 cut(s)	4, 32, 162, 186, 296, 384, 499
HpyF10VI	GCNNNNNNNGC	1 cut(s)	406
HpyF3I	CTNAG	4 cut(s)	54, 282, 375, 548
HpySE526I	ACGT	2 cut(s)	189, 543
Hsp92II	CATG	4 cut(s)	79, 413, 476, 499
LpnPI	CCDG	4 cut(s)	77, 133, 306, 445
Lsp1109I	GCAGC	2 cut(s)	511, 539
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	2 cut(s)	86, 120
MaeII	ACGT	2 cut(s)	189, 543
MaeIII	GTNAC	2 cut(s)	277, 363
MboII	GAAGA	3 cut(s)	19, 348, 551
MfeI	CAATTG	1 cut(s)	172
MluCI	AATT	1 cut(s)	172
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	7 cut(s)	118, 277, 282, 325, 399, 423, 430
MseI	TTAA	3 cut(s)	248, 350, 468
MslI	CAYNNNNRTG	2 cut(s)	309, 514
MunI	CAATTG	1 cut(s)	172
MwoI	GCNNNNNNNGC	1 cut(s)	406
NlaIII	CATG	4 cut(s)	79, 413, 476, 499
NmuCI	GTSAC	1 cut(s)	277
NspI	RCATGY	1 cut(s)	499
PceI	AGGCCT	1 cut(s)	292
PkrI	GCNGC	2 cut(s)	501, 554
Psp1406I	AACGTT	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	177
RsaI	GTAC	1 cut(s)	546
RsaNI	GTAC	1 cut(s)	545
RseI	CAYNNNNRTG	2 cut(s)	309, 514
SaqAI	TTAA	3 cut(s)	248, 350, 468
SatI	GCNGC	2 cut(s)	500, 553
Sau96I	GGNCC	1 cut(s)	177
SetI	ASST	8 cut(s)	91, 129, 167, 192, 323, 376, 546, 554
SfaNI	GCATC	1 cut(s)	301
SmiMI	CAYNNNNRTG	2 cut(s)	309, 514
Sse9I	AATT	1 cut(s)	172
SseBI	AGGCCT	1 cut(s)	292
SsiI	CCGC	1 cut(s)	107
SspMI	CTAG	2 cut(s)	86, 120
StuI	AGGCCT	1 cut(s)	292
TaaI	ACNGT	2 cut(s)	135, 243
TaiI	ACGT	2 cut(s)	192, 546
TasI	AATT	1 cut(s)	172
Tru1I	TTAA	3 cut(s)	248, 350, 468
Tru9I	TTAA	3 cut(s)	248, 350, 468
TscAI	CASTG	1 cut(s)	303
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	2 cut(s)	499, 552
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	2 cut(s)	81, 236
TspGWI	ACGGA	1 cut(s)	343
TspRI	CASTG	1 cut(s)	303
XceI	RCATGY	1 cut(s)	499
XspI	CTAG	2 cut(s)	86, 120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.