Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006147.1

Orthogroup ID

OG0002067

Physical Location & Seq

Genomic Coordinates Reverse (-)

17109 .. 17399

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006147.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atggttcaagatgaaggtatccaagcagaaatttgtgaagaaaaagctaaaactgctagtggaactcacagcttccaatatgaggttgaaccgtcagttggggttagggacttgctttgcacctttgacaattggcccaactgcaacgttggaagttctaacagaaaagatgatggtatgaagcactttggattggaactgtctttaagaagttcgaatggttcacacaaggaagtgactgaggagaggcctgcaccgaaacattctgatgcctctaccttttcacagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048511 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

96

Amino Acids

10.62

Weight (kDa)

5.08

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46670 AT2G46790 AT2G46790 AT2G46790 AT2G46790 AT2G46790
fragaria_vesca	FvH4_7g17760 FvH4_7g17760 FvH4_7g17760 FvH4_7g17760 FvH4_7g17760
malus_domestica	MD01G1088900.v1.1
prunus_persica	Prupe.2G198500_v2.0.a1 Prupe.2G198500_v2.0.a1
pyrus_communis	pycom01g11320
rosa_chinensis	RchiOBHm_Chr1g0361151
rosa_laevigata	RLG00000027745
rosa_multiflora	Rmu_co8346237.1_g000001 Rmu_sc0000309.1_g000018 Rmu_sc0000427.1_g000034 Rmu_sc0001816.1_g000014 Rmu_sc0002872.1_g000001 Rmu_sc0006147.1_g000005 Rmu_sc0035862.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295360 Rroxscaffold_6G00419120
rosa_rugosa	Rorug01G0286500 Rorug01G0286500 Rorug01G0286500 Rorug01G0286500
rosa_samantha	Rh1AG206100 Rh1AG297800 Rh1BG261800 Rh1CG191000 Rh1CG279200 Rh1DG291700 Rh2BG478900 Rh2DG487700 Rh2DG555300 Rh3AG290400 Rh4AG103700 Rh4AG103800 Rh4CG112000
rosa_wichuraiana	Rw1G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	30
AfiI	CCNNNNNNNGG	2 cut(s)	82, 98
AgsI	TTSAA	2 cut(s)	8, 89
AjuI	GAANNNNNNNTTGG	2 cut(s)	81, 113
AluBI	AGCT	2 cut(s)	47, 72
AluI	AGCT	2 cut(s)	47, 72
AoxI	GGCC	2 cut(s)	134, 248
ApoI	RAATTY	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	135
AsuII	TTCGAA	1 cut(s)	215
BccI	CCATC	1 cut(s)	167
BciVI	GTATCC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	57
BfuI	GTATCC	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	135
BmsI	GCATC	1 cut(s)	259
Bpu14I	TTCGAA	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 98
BseLI	CCNNNNNNNGG	2 cut(s)	82, 98
BseMII	CTCAG	1 cut(s)	231
BseRI	GAGGAG	1 cut(s)	257
BsgI	GTGCAG	1 cut(s)	237
BshFI	GGCC	2 cut(s)	136, 250
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	2 cut(s)	82, 98
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	2 cut(s)	136, 250
Bsp119I	TTCGAA	1 cut(s)	215
BspANI	GGCC	2 cut(s)	136, 250
BspCNI	CTCAG	1 cut(s)	232
BspT104I	TTCGAA	1 cut(s)	215
Bst4CI	ACNGT	3 cut(s)	93, 201, 288
BstBI	TTCGAA	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BsuI	GTATCC	1 cut(s)	29
BsuRI	GGCC	2 cut(s)	136, 250
Cac8I	GCNNGC	1 cut(s)	252
Cfr13I	GGNCC	1 cut(s)	135
CviJI	RGCY	4 cut(s)	47, 72, 136, 250
CviKI_1	RGCY	4 cut(s)	47, 72, 136, 250
DdeI	CTNAG	1 cut(s)	240
Eco147I	AGGCCT	1 cut(s)	250
FaiI	YATR	2 cut(s)	81, 179
FaqI	GGGAC	1 cut(s)	122
FspBI	CTAG	1 cut(s)	57
HaeIII	GGCC	2 cut(s)	136, 250
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	1 cut(s)	8
Hpy8I	GTNNAC	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	8
HpyCH4III	ACNGT	3 cut(s)	93, 201, 288
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	3 cut(s)	120, 144, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	1 cut(s)	147
LpnPI	CCDG	1 cut(s)	264
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	235
MboII	GAAGA	1 cut(s)	50
MfeI	CAATTG	1 cut(s)	130
MluCI	AATT	2 cut(s)	30, 130
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	4 cut(s)	76, 235, 240, 283
MseI	TTAA	1 cut(s)	206
MslI	CAYNNNNRTG	1 cut(s)	267
MunI	CAATTG	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	53
NmuCI	GTSAC	1 cut(s)	235
NspV	TTCGAA	1 cut(s)	215
PceI	AGGCCT	1 cut(s)	250
Psp1406I	AACGTT	1 cut(s)	147
PspPI	GGNCC	1 cut(s)	135
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	206
Sau96I	GGNCC	1 cut(s)	135
SetI	ASST	7 cut(s)	19, 49, 74, 87, 125, 150, 281
SfaNI	GCATC	1 cut(s)	259
SfuI	TTCGAA	1 cut(s)	215
SgeI	CNNG	6 cut(s)	20, 35, 69, 124, 241, 263
SmiMI	CAYNNNNRTG	1 cut(s)	267
Sse9I	AATT	2 cut(s)	30, 130
SseBI	AGGCCT	1 cut(s)	250
SspMI	CTAG	1 cut(s)	57
StuI	AGGCCT	1 cut(s)	250
TaaI	ACNGT	3 cut(s)	93, 201, 288
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	215
TasI	AATT	2 cut(s)	30, 130
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TseFI	GTSAC	1 cut(s)	235
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	2 cut(s)	27, 194
XapI	RAATTY	1 cut(s)	30
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.