Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002067

Physical Location & Seq

Genomic Coordinates Reverse (-)

22126872 .. 22128617

Gene Structure 1746 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG103800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCAGGATATATCGCAGCTAAAGTATGGCAGTGCTTCTAATTTGAGCAATACAGATATTGAAATGCTTGAAGATTGTGATAGATTGGACAATGAATCTGTTGTGCATGAGAGTGAAACTAAAGATGAAGGTATCCAAGCAGAAATTTGTGAAGAAAAAGCTAAAACTGCTAGTGGAACTCACAGCTTCCAATATGAGGTTGAACCGTCAGTTGGGGTTAGGGACTTGCTTTGCACCTTTGACAATTGGCCCAACTGCAACGTTGGAAGTTCTAACAGAAAAGATGATGGTATGAAGCACTTTGGATTGGAACTGTCTTTAAGAAGTTCGAATGGTTCACACAAGGAAGTGACTGAGGAGAGGCCTGCACCGAAACATTCTGATGCCTCTACCTTTTCACGTTTGCCGTGTCTACTATGCCTAAGATGTATGCGAGACACATGTATACCTGATAAGAAGATGCTTAAAGATCCAAGGAGGCTGTATGCACCTGGTCGTCTCTATCATATTGTTGAGAGAAAGCCTTGCAAGTGTTGTTCATTTGAAATAAACGTTGGCAAATATCTGCTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048511 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

191

Amino Acids

21.63

Weight (kDa)

5.57

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46670 AT2G46790 AT2G46790 AT2G46790 AT2G46790 AT2G46790
fragaria_vesca	FvH4_7g17760 FvH4_7g17760 FvH4_7g17760 FvH4_7g17760 FvH4_7g17760
malus_domestica	MD01G1088900.v1.1
prunus_persica	Prupe.2G198500_v2.0.a1 Prupe.2G198500_v2.0.a1
pyrus_communis	pycom01g11320
rosa_chinensis	RchiOBHm_Chr1g0361151
rosa_laevigata	RLG00000027745
rosa_multiflora	Rmu_co8346237.1_g000001 Rmu_sc0000309.1_g000018 Rmu_sc0000427.1_g000034 Rmu_sc0001816.1_g000014 Rmu_sc0002872.1_g000001 Rmu_sc0006147.1_g000005 Rmu_sc0035862.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295360 Rroxscaffold_6G00419120
rosa_rugosa	Rorug01G0286500 Rorug01G0286500 Rorug01G0286500 Rorug01G0286500
rosa_samantha	Rh1AG206100 Rh1AG297800 Rh1BG261800 Rh1CG191000 Rh1CG279200 Rh1DG291700 Rh2BG478900 Rh2DG487700 Rh2DG555300 Rh3AG290400 Rh4AG103700 Rh4AG103800 Rh4CG112000
rosa_wichuraiana	Rw1G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	412, 445
AclI	AACGTT	2 cut(s)	261, 552
AclWI	GGATC	1 cut(s)	464
AcsI	RAATTY	1 cut(s)	144
AfiI	CCNNNNNNNGG	2 cut(s)	196, 212
AflIII	ACRYGT	1 cut(s)	440
AgsI	TTSAA	4 cut(s)	62, 71, 203, 545
AjnI	CCWGG	1 cut(s)	490
AjuI	GAANNNNNNNTTGG	4 cut(s)	195, 227, 537, 569
AluBI	AGCT	3 cut(s)	19, 161, 186
AluI	AGCT	3 cut(s)	19, 161, 186
Alw26I	GTCTC	2 cut(s)	429, 503
AlwI	GGATC	1 cut(s)	464
AoxI	GGCC	2 cut(s)	248, 362
ApeKI	GCWGC	1 cut(s)	16
ApoI	RAATTY	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	249
AsuII	TTCGAA	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	1 cut(s)	281
BceAI	ACGGC	1 cut(s)	391
BciT130I	CCWGG	1 cut(s)	492
BciVI	GTATCC	1 cut(s)	143
BcoDI	GTCTC	2 cut(s)	429, 503
BfaI	CTAG	1 cut(s)	171
BfuI	GTATCC	1 cut(s)	143
BisI	GCNGC	1 cut(s)	17
BlsI	GCNGC	1 cut(s)	18
Bme1390I	CCNGG	1 cut(s)	492
BmgT120I	GGNCC	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	492
BmsI	GCATC	2 cut(s)	373, 450
Bpu14I	TTCGAA	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	473
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 212
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	1 cut(s)	473
BseLI	CCNNNNNNNGG	2 cut(s)	196, 212
BseMII	CTCAG	1 cut(s)	345
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	1 cut(s)	28
BsgI	GTGCAG	1 cut(s)	351
BshFI	GGCC	2 cut(s)	250, 364
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	2 cut(s)	196, 212
BsmAI	GTCTC	2 cut(s)	429, 503
BsmBI	CGTCTC	1 cut(s)	503
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	2 cut(s)	250, 364
Bsp119I	TTCGAA	1 cut(s)	329
Bsp143I	GATC	1 cut(s)	469
BspANI	GGCC	2 cut(s)	250, 364
BspCNI	CTCAG	1 cut(s)	346
BspPI	GGATC	1 cut(s)	464
BspT104I	TTCGAA	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	473
BssMI	GATC	1 cut(s)	469
BssNAI	GTATAC	1 cut(s)	446
BssT1I	CCWWGG	1 cut(s)	473
Bst1107I	GTATAC	1 cut(s)	446
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	2 cut(s)	207, 315
BstBI	TTCGAA	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	2 cut(s)	354, 422
BstKTI	GATC	1 cut(s)	472
BstMAI	GTCTC	2 cut(s)	429, 503
BstMBI	GATC	1 cut(s)	469
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	490
BstV1I	GCAGC	1 cut(s)	28
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
BstZ17I	GTATAC	1 cut(s)	446
BsuI	GTATCC	1 cut(s)	143
BsuRI	GGCC	2 cut(s)	250, 364
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	366
Cfr13I	GGNCC	1 cut(s)	249
CsiI	ACCWGGT	1 cut(s)	490
CviAII	CATG	2 cut(s)	107, 441
CviJI	RGCY	7 cut(s)	19, 161, 186, 250, 364, 481, 523
CviKI_1	RGCY	7 cut(s)	19, 161, 186, 250, 364, 481, 523
DdeI	CTNAG	2 cut(s)	354, 422
DpnI	GATC	1 cut(s)	471
DpnII	GATC	1 cut(s)	469
Eco130I	CCWWGG	1 cut(s)	473
Eco147I	AGGCCT	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	473
Esp3I	CGTCTC	1 cut(s)	503
FaeI	CATG	2 cut(s)	110, 444
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	2 cut(s)	106, 440
FblI	GTMKAC	2 cut(s)	412, 445
Fnu4HI	GCNGC	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	17
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	1 cut(s)	17
HaeIII	GGCC	2 cut(s)	250, 364
Hin1II	CATG	2 cut(s)	110, 444
HinfI	GANTC	1 cut(s)	95
Hpy166II	GTNNAC	3 cut(s)	338, 413, 446
Hpy188I	TCNGA	1 cut(s)	382
Hpy8I	GTNNAC	3 cut(s)	338, 413, 446
HpyAV	CCTTC	1 cut(s)	122
HpyCH4III	ACNGT	2 cut(s)	207, 315
HpyCH4IV	ACGT	3 cut(s)	261, 400, 552
HpyCH4V	TGCA	7 cut(s)	4, 106, 234, 258, 368, 488, 528
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	2 cut(s)	354, 422
HpySE526I	ACGT	3 cut(s)	261, 400, 552
Hsp92II	CATG	2 cut(s)	110, 444
Kzo9I	GATC	1 cut(s)	469
LpnPI	CCDG	4 cut(s)	378, 462, 477, 504
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	2 cut(s)	373, 450
MabI	ACCWGGT	1 cut(s)	490
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	3 cut(s)	261, 400, 552
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	1 cut(s)	471
MboI	GATC	1 cut(s)	469
MboII	GAAGA	3 cut(s)	83, 164, 469
MfeI	CAATTG	1 cut(s)	244
MflI	RGATCY	1 cut(s)	469
MluCI	AATT	3 cut(s)	40, 144, 244
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	5 cut(s)	190, 349, 354, 397, 471
MseI	TTAA	2 cut(s)	320, 465
MslI	CAYNNNNRTG	2 cut(s)	111, 381
MspR9I	CCNGG	1 cut(s)	492
MunI	CAATTG	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	492
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeII	GATC	1 cut(s)	469
NlaIII	CATG	2 cut(s)	110, 444
NmuCI	GTSAC	1 cut(s)	349
NspI	RCATGY	1 cut(s)	444
NspV	TTCGAA	1 cut(s)	329
PceI	AGGCCT	1 cut(s)	364
PciI	ACATGT	1 cut(s)	440
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	18
PscI	ACATGT	1 cut(s)	440
Psp1406I	AACGTT	2 cut(s)	261, 552
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PspPI	GGNCC	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	469
RseI	CAYNNNNRTG	2 cut(s)	111, 381
SaqAI	TTAA	2 cut(s)	320, 465
SatI	GCNGC	1 cut(s)	17
Sau3AI	GATC	1 cut(s)	469
Sau96I	GGNCC	1 cut(s)	249
ScrFI	CCNGG	1 cut(s)	492
SexAI	ACCWGGT	1 cut(s)	490
SfaNI	GCATC	2 cut(s)	373, 450
SfuI	TTCGAA	1 cut(s)	329
SmiMI	CAYNNNNRTG	2 cut(s)	111, 381
Sse9I	AATT	3 cut(s)	40, 144, 244
SseBI	AGGCCT	1 cut(s)	364
SspMI	CTAG	1 cut(s)	171
StuI	AGGCCT	1 cut(s)	364
StyD4I	CCNGG	1 cut(s)	490
StyI	CCWWGG	1 cut(s)	473
TaaI	ACNGT	2 cut(s)	207, 315
TaiI	ACGT	3 cut(s)	264, 403, 555
TaqI	TCGA	1 cut(s)	329
TasI	AATT	3 cut(s)	40, 144, 244
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	2 cut(s)	320, 465
Tru9I	TTAA	2 cut(s)	320, 465
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	4 cut(s)	108, 141, 308, 528
TspRI	CASTG	1 cut(s)	37
XapI	RAATTY	1 cut(s)	144
XceI	RCATGY	1 cut(s)	444
XmiI	GTMKAC	2 cut(s)	412, 445
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.