Rroxscaffold_4G00295360

Two-component response regulator-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
15400685 .. 15400975
291 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00295360.1

Sequence Viewer

Length: 291 bp
ATGGTTCAAGATGAAGGTATCCAAGCAGAAATTTGTGAAGAAAAAGCTAAAACTGCTAGTGGAACTCACAGCTTCCAATATGAGGTTGAACCCTCAGTTGGGGTCAGGGACTTGCTTTGCACCTTTGACAATTGGCCCAACTGCAACGTTGGAAGTTCTAACAGAAAAGATGATGGTATGAAGCACTTTGGATTGGAACTGTCTTTAAGAAGTTCGGATGGTTCACACAAGGAAGTGACTGAGGAGAGGCCTGCACTGAAACATTCTGATGCCTCTGCCTTTTCACGGTGA

Protein Analysis

96

Amino Acids

10.63

Weight (kDa)

5.09

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 147
AcsI RAATTY 1 cut(s) 30
AfiI CCNNNNNNNGG 4 cut(s) 82, 98, 99, 285
AgsI TTSAA 2 cut(s) 8, 89
AjuI GAANNNNNNNTTGG 2 cut(s) 81, 113
AluBI AGCT 2 cut(s) 47, 72
AluI AGCT 2 cut(s) 47, 72
AoxI GGCC 2 cut(s) 134, 248
ApoI RAATTY 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 135
BccI CCATC 2 cut(s) 167, 212
BciVI GTATCC 1 cut(s) 29
BfaI CTAG 1 cut(s) 57
BfuI GTATCC 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 135
BmsI GCATC 1 cut(s) 259
Bsc4I CCNNNNNNNGG 4 cut(s) 82, 98, 99, 285
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 4 cut(s) 82, 98, 99, 285
BseMII CTCAG 2 cut(s) 108, 231
BseRI GAGGAG 1 cut(s) 257
BsgI GTGCAG 1 cut(s) 237
BshFI GGCC 2 cut(s) 136, 250
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 4 cut(s) 82, 98, 99, 285
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 2 cut(s) 136, 250
BspANI GGCC 2 cut(s) 136, 250
BspCNI CTCAG 2 cut(s) 107, 232
Bst4CI ACNGT 2 cut(s) 201, 288
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 2 cut(s) 94, 240
BstF5I GGATG 1 cut(s) 223
BstMWI GCNNNNNNNGC 1 cut(s) 53
BsuI GTATCC 1 cut(s) 29
BsuRI GGCC 2 cut(s) 136, 250
BtsCI GGATG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 254
Cac8I GCNNGC 1 cut(s) 252
Cfr13I GGNCC 1 cut(s) 135
CviJI RGCY 4 cut(s) 47, 72, 136, 250
CviKI_1 RGCY 4 cut(s) 47, 72, 136, 250
DdeI CTNAG 2 cut(s) 94, 240
Eco147I AGGCCT 1 cut(s) 250
FaiI YATR 2 cut(s) 81, 179
FaqI GGGAC 1 cut(s) 122
FokI GGATG 1 cut(s) 230
FspBI CTAG 1 cut(s) 57
HaeIII GGCC 2 cut(s) 136, 250
Hpy166II GTNNAC 1 cut(s) 224
Hpy188I TCNGA 2 cut(s) 217, 268
Hpy188III TCNNGA 1 cut(s) 8
Hpy8I GTNNAC 1 cut(s) 224
HpyAV CCTTC 1 cut(s) 8
HpyCH4III ACNGT 2 cut(s) 201, 288
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 3 cut(s) 120, 144, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 2 cut(s) 94, 240
HpySE526I ACGT 1 cut(s) 147
LpnPI CCDG 2 cut(s) 91, 264
LweI GCATC 1 cut(s) 259
MaeI CTAG 1 cut(s) 57
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 235
MboII GAAGA 1 cut(s) 50
MfeI CAATTG 1 cut(s) 130
MluCI AATT 2 cut(s) 30, 130
MmeI TCCRAC 1 cut(s) 130
MnlI CCTC 5 cut(s) 76, 103, 235, 240, 283
MseI TTAA 1 cut(s) 206
MslI CAYNNNNRTG 1 cut(s) 267
MunI CAATTG 1 cut(s) 130
MwoI GCNNNNNNNGC 1 cut(s) 53
NmuCI GTSAC 1 cut(s) 235
PceI AGGCCT 1 cut(s) 250
Psp1406I AACGTT 1 cut(s) 147
PspPI GGNCC 1 cut(s) 135
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 1 cut(s) 206
Sau96I GGNCC 1 cut(s) 135
SetI ASST 6 cut(s) 19, 49, 74, 87, 125, 150
SfaNI GCATC 1 cut(s) 259
SgeI CNNG 7 cut(s) 20, 35, 69, 118, 124, 241, 263
SmiMI CAYNNNNRTG 1 cut(s) 267
Sse9I AATT 2 cut(s) 30, 130
SseBI AGGCCT 1 cut(s) 250
SspMI CTAG 1 cut(s) 57
StuI AGGCCT 1 cut(s) 250
TaaI ACNGT 2 cut(s) 201, 288
TaiI ACGT 1 cut(s) 150
TasI AATT 2 cut(s) 30, 130
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TscAI CASTG 1 cut(s) 261
TseFI GTSAC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 27, 194
TspRI CASTG 1 cut(s) 261
XapI RAATTY 1 cut(s) 30
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.