AT2G46790

Two-component response regulator-like APRR9 isoform X1

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
19232607 .. 19235179
2573 bp
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UTR
Exon/CDS
Intron
AT2G46790.5

Sequence Viewer

Length: 1407 bp
ATGGGGGAGATTGTGGTTTTAAGTAGTGATGATGGTATGGAGACTATAAAGAACAGAGTAAAGTCATCGGAAGTTGTTCAGTGGGAGAAGTATTTGCCTAAAACTGTACTTAGGGTTTTGTTAGTTGAATCTGATTACTCAACTCGTCAAATCATCACTGCCCTTCTTCGTAAATGCTGTTACAAAGTTGTAGCTGTTTCTGATGGTTTAGCTGCGTGGGAGGTTCTAAAGGAGAAGTCACATAACATTGATCTTATACTAACAGAGCTGGATTTGCCATCTATATCTGGTTTTGCTCTGCTTGCTTTGGTAATGGAGCATGAAGCTTGCAAGAACATTCCTGTCATAATGATGTCTTCTCAAGATTCGATAAAAATGGTGTTGAAGTGTATGCTGAGAGGTGCTGCTGATTATCTAATCAAACCAATGAGGAAAAACGAGTTGAAAAATCTATGGCAACATGTTTGGAGAAGACTGACTTTGCGTGATGATCCTACTGCTCATGCTCAAAGCTTACCAGCTTCACAGCACAACCTTGAAGATACTGATGAAACTTGTGAAGATTCCAGATATCATTCAGATCAAGGAAGTGGTGCTCAGGCTATCAATTACAATGGTCACAATAAGCTGATGGAGAATGGCAAATCAGTGGATGAAAGAGACGAGTTTAAGGAAACTTTTGATGTGACAATGGATTTGATTGGTGGAATTGACAAGCGTCCTGATAGTATTTATAAAGACAAGAGTCGAGATGAGTGTGTTGGTCCTGAGCTTGGACTTTCTCTGAAAAGATCTTGCTCTGTAAGTTTTGAGAACCAAGATGAAAGCAAGCATCAAAAGCTTAGCCTCTCTGATGCGTCGGCCTTCTCAAGATTTGAGGAAAGCAAGTCAGCAGAAAAAGCCGTCGTTGCTTTAGAGGAGAGTACTTCAGGTGAGCCAAAGACACCAACCGAATCACATGAAAAGTTAAGAAAAGTAACATCTGATCAAGGAAGCGCCACAACGAGCAGCAACCAGGAGAATATCGGATCATCAAGCGTAAGCTTCCGTAACCAAGTTCTTCAGTCCACAGTAACGAATCAGAAGCAAGATTCACCCATACCGGTAGAATCAAATCGCGAGAAAGCAGCTAGCAAGGAAGTAGAAGCTGGTTCTCAAAGCACCAATGAGGGGATTGCTGGACAAAGCAGTAGCACAGAGAAACCAAAGGAAGAAGAAAGTGCGAAACAACGTTGGAGTAGAAGCCAGAGAGAAGCTGCATTGATGAAGTTCCGGTTGAAGAGGAAAGATCGATGCTTTGACAAAAAGGTTCGGTACCAGAGCAGGAAGAAGCTAGCAGAACAACGTCCTCGAGTGAAAGGCCAGTTCGTGCGAACCGTGAATTCAGACGCGTCTACAAAATCATGA

Protein Analysis

468

Amino Acids

52.56

Weight (kDa)

7.57

Isoelectric Point (pI)

50.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 260 - 301 3.3e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 735
Acc65I GGTACC 1 cut(s) 1314
AccB1I GGYRCC 1 cut(s) 1314
AccI GTMKAC 1 cut(s) 1394
AccII CGCG 2 cut(s) 1119, 1391
AclI AACGTT 1 cut(s) 1231
AclWI GGATC 2 cut(s) 485, 1036
AcsI RAATTY 1 cut(s) 1381
AcuI CTGAAG 2 cut(s) 912, 1046
AfaI GTAC 3 cut(s) 108, 925, 1316
AfiI CCNNNNNNNGG 2 cut(s) 773, 1170
AflIII ACRYGT 2 cut(s) 460, 1389
AgeI ACCGGT 1 cut(s) 1102
AgsI TTSAA 5 cut(s) 128, 385, 445, 539, 1279
AjnI CCWGG 1 cut(s) 1014
Alw21I GWGCWC 1 cut(s) 598
Alw26I GTCTC 2 cut(s) 35, 654
AlwI GGATC 2 cut(s) 485, 1036
Ama87I CYCGRG 1 cut(s) 1350
AoxI GGCC 2 cut(s) 861, 1360
ApeKI GCWGC 5 cut(s) 212, 404, 1008, 1127, 1256
ApoI RAATTY 1 cut(s) 1381
ArsI GACNNNNNNTTYG 2 cut(s) 679, 711
AsiGI ACCGGT 1 cut(s) 1102
Asp700I GAANNNNTTC 1 cut(s) 75
Asp718I GGTACC 1 cut(s) 1314
AspLEI GCGC 1 cut(s) 998
AspS9I GGNCC 1 cut(s) 764
AsuHPI GGTGA 2 cut(s) 944, 1086
AsuNHI GCTAGC 2 cut(s) 1130, 1333
AvaI CYCGRG 1 cut(s) 1350
AvaII GGWCC 1 cut(s) 764
BanI GGYRCC 1 cut(s) 1314
BbsI GAAGAC 2 cut(s) 348, 478
Bbv12I GWGCWC 1 cut(s) 598
BbvI GCAGC 5 cut(s) 199, 391, 1020, 1139, 1243
BccI CCATC 4 cut(s) 26, 197, 286, 625
BceAI ACGGC 1 cut(s) 887
BciT130I CCWGG 1 cut(s) 1016
BclI TGATCA 1 cut(s) 985
BcoDI GTCTC 2 cut(s) 35, 654
BfaI CTAG 2 cut(s) 1131, 1334
BfoI RGCGCY 1 cut(s) 999
BglII AGATCT 1 cut(s) 791
BisI GCNGC 5 cut(s) 213, 405, 1009, 1128, 1257
BlpI GCTNAGC 1 cut(s) 842
BlsI GCNGC 5 cut(s) 214, 406, 1010, 1129, 1258
BmcAI AGTACT 1 cut(s) 925
Bme1390I CCNGG 1 cut(s) 1016
Bme18I GGWCC 1 cut(s) 764
BmeT110I CYCGRG 1 cut(s) 1350
BmgT120I GGNCC 1 cut(s) 764
BmiI GGNNCC 1 cut(s) 1316
BmrFI CCNGG 1 cut(s) 1016
BmsI GCATC 3 cut(s) 841, 844, 1283
BmtI GCTAGC 2 cut(s) 1134, 1337
BoxI GACNNNNGTC 2 cut(s) 717, 744
BpiI GAAGAC 2 cut(s) 348, 478
Bpu10I CCTNAGC 2 cut(s) 597, 768
Bpu1102I GCTNAGC 1 cut(s) 842
BpuEI CTTGAG 2 cut(s) 345, 853
Bsa29I ATCGAT 1 cut(s) 1291
BsaWI WCCGGW 2 cut(s) 1102, 1272
Bsc4I CCNNNNNNNGG 2 cut(s) 773, 1170
Bse118I RCCGGY 1 cut(s) 1102
Bse1I ACTGG 1 cut(s) 1363
BseBI CCWGG 1 cut(s) 1016
BseCI ATCGAT 1 cut(s) 1291
BseGI GGATG 1 cut(s) 658
BseLI CCNNNNNNNGG 2 cut(s) 773, 1170
BseMII CTCAG 3 cut(s) 386, 611, 759
BseNI ACTGG 1 cut(s) 1363
BseRI GAGGAG 1 cut(s) 932
BseXI GCAGC 5 cut(s) 199, 391, 1020, 1139, 1243
Bsh1236I CGCG 2 cut(s) 1119, 1391
BshFI GGCC 2 cut(s) 863, 1362
BshNI GGYRCC 1 cut(s) 1314
BshTI ACCGGT 1 cut(s) 1102
BshVI ATCGAT 1 cut(s) 1291
BsiHKAI GWGCWC 1 cut(s) 598
BsiHKCI CYCGRG 1 cut(s) 1350
BsiSI CCGG 2 cut(s) 1103, 1273
BslI CCNNNNNNNGG 2 cut(s) 773, 1170
BsmAI GTCTC 2 cut(s) 35, 654
BsmBI CGTCTC 1 cut(s) 654
BsnI GGCC 2 cut(s) 863, 1362
BsoBI CYCGRG 1 cut(s) 1350
Bsp1286I GDGCHC 1 cut(s) 598
Bsp143I GATC 7 cut(s) 250, 490, 580, 791, 985, 1028, 1288
Bsp1720I GCTNAGC 1 cut(s) 842
Bsp68I TCGCGA 1 cut(s) 1119
BspANI GGCC 2 cut(s) 863, 1362
BspCNI CTCAG 3 cut(s) 387, 610, 760
BspDI ATCGAT 1 cut(s) 1291
BspFNI CGCG 2 cut(s) 1119, 1391
BspHI TCATGA 1 cut(s) 1403
BspLI GGNNCC 1 cut(s) 1316
BspOI GCTAGC 2 cut(s) 1134, 1337
BspPI GGATC 2 cut(s) 485, 1036
BspT107I GGYRCC 1 cut(s) 1314
BsrFI RCCGGY 1 cut(s) 1102
BsrI ACTGG 1 cut(s) 1363
BssAI RCCGGY 1 cut(s) 1102
BssMI GATC 7 cut(s) 250, 490, 580, 791, 985, 1028, 1288
Bst2UI CCWGG 1 cut(s) 1016
Bst4CI ACNGT 3 cut(s) 106, 1072, 1378
Bst6I CTCTTC 1 cut(s) 1274
BstC8I GCNNGC 5 cut(s) 303, 328, 830, 1132, 1335
BstDEI CTNAG 5 cut(s) 110, 395, 597, 768, 842
BstF5I GGATG 1 cut(s) 658
BstFNI CGCG 2 cut(s) 1119, 1391
BstH2I RGCGCY 1 cut(s) 999
BstHHI GCGC 1 cut(s) 998
BstKTI GATC 7 cut(s) 253, 493, 583, 794, 988, 1031, 1291
BstMAI GTCTC 2 cut(s) 35, 654
BstMBI GATC 7 cut(s) 250, 490, 580, 791, 985, 1028, 1288
BstMWI GCNNNNNNNGC 5 cut(s) 274, 302, 838, 899, 908
BstNI CCWGG 1 cut(s) 1016
BstNSI RCATGY 1 cut(s) 464
BstPAI GACNNNNGTC 2 cut(s) 717, 744
BstSCI CCNGG 1 cut(s) 1014
BstUI CGCG 2 cut(s) 1119, 1391
BstV1I GCAGC 5 cut(s) 199, 391, 1020, 1139, 1243
BstV2I GAAGAC 2 cut(s) 348, 478
BstX2I RGATCY 1 cut(s) 791
BstYI RGATCY 1 cut(s) 791
Bsu15I ATCGAT 1 cut(s) 1291
BsuRI GGCC 2 cut(s) 863, 1362
BsuTUI ATCGAT 1 cut(s) 1291
BtsCI GGATG 1 cut(s) 658
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 3 cut(s) 86, 156, 654
BtuMI TCGCGA 1 cut(s) 1119
Cac8I GCNNGC 5 cut(s) 303, 328, 830, 1132, 1335
CciI TCATGA 1 cut(s) 1403
CfoI GCGC 1 cut(s) 998
Cfr10I RCCGGY 1 cut(s) 1102
Cfr13I GGNCC 1 cut(s) 764
ClaI ATCGAT 1 cut(s) 1291
CseI GACGC 4 cut(s) 707, 846, 1380, 1397
Csp6I GTAC 3 cut(s) 107, 924, 1315
CspAI ACCGGT 1 cut(s) 1102
CviAII CATG 5 cut(s) 320, 461, 503, 959, 1404
CviQI GTAC 3 cut(s) 107, 924, 1315
DdeI CTNAG 5 cut(s) 110, 395, 597, 768, 842
DpnI GATC 7 cut(s) 252, 492, 582, 793, 987, 1030, 1290
DpnII GATC 7 cut(s) 250, 490, 580, 791, 985, 1028, 1288
Eam1104I CTCTTC 1 cut(s) 1274
EarI CTCTTC 1 cut(s) 1274
Eco32I GATATC 1 cut(s) 572
Eco47I GGWCC 1 cut(s) 764
Eco57I CTGAAG 2 cut(s) 912, 1046
Eco88I CYCGRG 1 cut(s) 1350
EcoRI GAATTC 1 cut(s) 1381
EcoRII CCWGG 1 cut(s) 1014
EcoRV GATATC 1 cut(s) 572
Esp3I CGTCTC 1 cut(s) 654
FaeI CATG 5 cut(s) 323, 464, 506, 962, 1407
FalI AAGNNNNNCTT 2 cut(s) 463, 495
FatI CATG 5 cut(s) 319, 460, 502, 958, 1403
FbaI TGATCA 1 cut(s) 985
FblI GTMKAC 1 cut(s) 1394
Fnu4HI GCNGC 5 cut(s) 213, 405, 1009, 1128, 1257
FokI GGATG 1 cut(s) 665
Fsp4HI GCNGC 5 cut(s) 213, 405, 1009, 1128, 1257
FspBI CTAG 2 cut(s) 1131, 1334
GlaI GCGC 1 cut(s) 997
GluI GCNGC 5 cut(s) 213, 405, 1009, 1128, 1257
HaeII RGCGCY 1 cut(s) 999
HaeIII GGCC 2 cut(s) 863, 1362
HapII CCGG 2 cut(s) 1103, 1273
HgaI GACGC 4 cut(s) 707, 846, 1380, 1397
HhaI GCGC 1 cut(s) 998
Hin1II CATG 5 cut(s) 323, 464, 506, 962, 1407
Hin6I GCGC 1 cut(s) 996
HinP1I GCGC 1 cut(s) 996
HindIII AAGCTT 4 cut(s) 324, 511, 839, 1042
HinfI GANTC 8 cut(s) 128, 365, 563, 745, 953, 1078, 1091, 1109
HpaII CCGG 2 cut(s) 1103, 1273
HphI GGTGA 2 cut(s) 944, 1086
Hpy166II GTNNAC 2 cut(s) 1068, 1395
Hpy188III TCNNGA 8 cut(s) 362, 567, 722, 749, 767, 870, 1118, 1404
Hpy8I GTNNAC 2 cut(s) 1068, 1395
Hpy99I CGWCG 2 cut(s) 862, 908
HpyAV CCTTC 2 cut(s) 173, 874
HpyCH4III ACNGT 3 cut(s) 106, 1072, 1378
HpyCH4IV ACGT 2 cut(s) 1231, 1345
HpyCH4V TGCA 2 cut(s) 330, 1259
HpyF10VI GCNNNNNNNGC 5 cut(s) 274, 302, 838, 899, 908
HpyF3I CTNAG 5 cut(s) 110, 395, 597, 768, 842
HpySE526I ACGT 2 cut(s) 1231, 1345
Hsp92II CATG 5 cut(s) 323, 464, 506, 962, 1407
HspAI GCGC 1 cut(s) 996
KpnI GGTACC 1 cut(s) 1318
Ksp22I TGATCA 1 cut(s) 985
Kzo9I GATC 7 cut(s) 250, 490, 580, 791, 985, 1028, 1288
LmnI GCTCC 1 cut(s) 316
Lsp1109I GCAGC 5 cut(s) 199, 391, 1020, 1139, 1243
LweI GCATC 3 cut(s) 841, 844, 1283
MaeI CTAG 2 cut(s) 1131, 1334
MaeII ACGT 2 cut(s) 1231, 1345
MaeIII GTNAC 7 cut(s) 179, 237, 617, 685, 976, 1049, 1072
MalI GATC 7 cut(s) 252, 492, 582, 793, 987, 1030, 1290
MboI GATC 7 cut(s) 250, 490, 580, 791, 985, 1028, 1288
MflI RGATCY 1 cut(s) 791
MhlI GDGCHC 1 cut(s) 598
MluCI AATT 3 cut(s) 607, 708, 1381
MluI ACGCGT 1 cut(s) 1389
MlyI GAGTC 1 cut(s) 754
MmeI TCCRAC 1 cut(s) 1214
MnlI CCTC 9 cut(s) 214, 392, 423, 857, 871, 910, 1162, 1275, 1359
MroXI GAANNNNTTC 1 cut(s) 75
MseI TTAA 3 cut(s) 20, 669, 968
MslI CAYNNNNRTG 1 cut(s) 350
MspI CCGG 2 cut(s) 1103, 1273
MspR9I CCNGG 1 cut(s) 1016
MvaI CCWGG 1 cut(s) 1016
MvnI CGCG 2 cut(s) 1119, 1391
MwoI GCNNNNNNNGC 5 cut(s) 274, 302, 838, 899, 908
NdeII GATC 7 cut(s) 250, 490, 580, 791, 985, 1028, 1288
NheI GCTAGC 2 cut(s) 1130, 1333
NlaIII CATG 5 cut(s) 323, 464, 506, 962, 1407
NlaIV GGNNCC 1 cut(s) 1316
NmuCI GTSAC 3 cut(s) 237, 617, 685
NruI TCGCGA 1 cut(s) 1119
NspI RCATGY 1 cut(s) 464
PaeR7I CTCGAG 1 cut(s) 1350
PagI TCATGA 1 cut(s) 1403
PciI ACATGT 1 cut(s) 460
PcsI WCGNNNNNNNCGW 1 cut(s) 1374
PdmI GAANNNNTTC 1 cut(s) 75
PfeI GAWTC 7 cut(s) 128, 365, 563, 953, 1078, 1091, 1109
PinAI ACCGGT 1 cut(s) 1102
PkrI GCNGC 5 cut(s) 214, 406, 1010, 1129, 1258
PleI GAGTC 1 cut(s) 753
PpsI GAGTC 1 cut(s) 753
PscI ACATGT 1 cut(s) 460
PshAI GACNNNNGTC 2 cut(s) 717, 744
PsiI TTATAA 1 cut(s) 735
Psp1406I AACGTT 1 cut(s) 1231
Psp6I CCWGG 1 cut(s) 1014
PspGI CCWGG 1 cut(s) 1014
PspN4I GGNNCC 1 cut(s) 1316
PspPI GGNCC 1 cut(s) 764
PspXI VCTCGAGB 1 cut(s) 1350
PsuI RGATCY 1 cut(s) 791
RruI TCGCGA 1 cut(s) 1119
RsaI GTAC 3 cut(s) 108, 925, 1316
RsaNI GTAC 3 cut(s) 107, 924, 1315
RseI CAYNNNNRTG 1 cut(s) 350
SaqAI TTAA 3 cut(s) 20, 669, 968
SatI GCNGC 5 cut(s) 213, 405, 1009, 1128, 1257
Sau3AI GATC 7 cut(s) 250, 490, 580, 791, 985, 1028, 1288
Sau96I GGNCC 1 cut(s) 764
ScaI AGTACT 1 cut(s) 925
SchI GAGTC 1 cut(s) 754
ScrFI CCNGG 1 cut(s) 1016
SduI GDGCHC 1 cut(s) 598
SfaNI GCATC 3 cut(s) 841, 844, 1283
Sfr274I CTCGAG 1 cut(s) 1350
SinI GGWCC 1 cut(s) 764
SlaI CTCGAG 1 cut(s) 1350
SmiMI CAYNNNNRTG 1 cut(s) 350
SmlI CTYRAG 3 cut(s) 360, 868, 1350
SmoI CTYRAG 3 cut(s) 360, 868, 1350
Sse9I AATT 3 cut(s) 607, 708, 1381
SspMI CTAG 2 cut(s) 1131, 1334
StyD4I CCNGG 1 cut(s) 1014
TaaI ACNGT 3 cut(s) 106, 1072, 1378
TaiI ACGT 2 cut(s) 1234, 1348
TaqI TCGA 4 cut(s) 368, 748, 1291, 1351
TasI AATT 3 cut(s) 607, 708, 1381
TatI WGTACW 2 cut(s) 106, 923
TfiI GAWTC 7 cut(s) 128, 365, 563, 953, 1078, 1091, 1109
Tru1I TTAA 3 cut(s) 20, 669, 968
Tru9I TTAA 3 cut(s) 20, 669, 968
TscAI CASTG 3 cut(s) 86, 163, 654
TseFI GTSAC 3 cut(s) 237, 617, 685
TseI GCWGC 5 cut(s) 212, 404, 1008, 1127, 1256
Tsp45I GTSAC 3 cut(s) 237, 617, 685
TspDTI ATGAA 6 cut(s) 336, 564, 669, 837, 975, 1280
TspGWI ACGGA 1 cut(s) 1037
TspRI CASTG 3 cut(s) 86, 163, 654
VpaK11BI GGWCC 1 cut(s) 764
XapI RAATTY 1 cut(s) 1381
XceI RCATGY 1 cut(s) 464
XhoI CTCGAG 1 cut(s) 1350
XmiI GTMKAC 1 cut(s) 1394
XmnI GAANNNNTTC 1 cut(s) 75
XspI CTAG 2 cut(s) 1131, 1334
ZrmI AGTACT 1 cut(s) 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.