Rh1CG279200

Two-component response regulator-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
54976655 .. 54980803
4149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG279200.1

Sequence Viewer

Length: 1581 bp
ATGTCGTCTCAAGACTCTGTGAATATGGTTTTGAAGTGCATGCAAAAAGGGGCCGCCGACTATCTGATTAAGCCGGTCAGGAGGAATGAGCTGAGAAACCTTTGGCAGCATGTGTGGAGAAGGCACACTCTAGCTAGTGGACAAGCTCCTCAGAACTTAACAGTTTCACAACAAAAAGTTGAAGCCACTTCGGAAAATAATGCAGCAAGTAATCATTCAAATGACTATGCTGCTTGTACGCGCAAAACTAAGGGATTCAGTCAGAAAGCAAGTGATGCCCAAGATATATCGCAGCTAAAGTATGGCAGTGCTTCTAATTTGAGCAATACAGATATTGAAATGCTTGAAGATTGTGATAGATTGGACAATGAATCTGTTGTGCATGAGAGTGAAACTAAAGAATATTCAGGTACATTTGGGTCAGATATTGTACCTTTGGATGAAGCACTTAACTCAGTTGCCTCAAGACTCAGAGAGGAAAATGTTTCTGCTAAAACAATGGTTCAAGATGAAGGTATCCAAGCAGAAATTTTTGAAGAAAAAGCTAAAACTGCTAGTGGCACTCACAGCCTCCAATATGAGGTTGAACCCTCAGTTGGGGTCAGGGACTTGCTTTGCACCTTTGACAATTGGCCCAACTGCAACATTGGAAGTTCTAACAGAAAAAATGATGGTATGAAGCACTTTGGATTGGAACTGTCTTTAAGAAGTTCGGATGGTTCACACAAGGAAGTGACTGAGGAGAGGTCTGCACTGAAACAATCTGATGCCTCTGCCTTTTCACGGTATAATAATAGCAAGGGACTGCAACCCCTTTTCCCGACATTTCCCAGTACAAAATCGGAGGATGCAAGCAATTCACATGATAGACAGGACAATATGGTAAACTTTGTTGATGGTCAAACTGAGCAAGCTGATTCATCCATCCGAGGCCCTCAACTTGGGGCGTTTCCTGTCACTAGTGTAAGGTCTGAGAATATGTGTGCTGGATACAGTCATTATTTCCCATCCTTGTTTCTTGGACAATCGGATTTGACCCCTTTGTTCAGTATCAAATCAGTTGGCCAGAGCACACAATCCACCTTTCACTCAGAACAAGGTTATGACGAGTCTGATAAAACTACTGATAAATCTATTGACCAAACCCTGCATGAGCAGAACAAACTGGAGAATGTGGAGCATTTGAAACCTGGTTCTCCTGCAGCTTCTCAGAGTGGTTGTAGTAGTTTAGGCAATGGTACTGTTGATAATCATATTAGTGGCGGCGCATATGGAAGCATTTGCAGTAGCAATGATGGAAAGGCCAGTTTGGCTGTAGCAGGTGAGATGGCCACAGCTTCTGAGAGTTTGAATGACAATGGTCGCTATGTTCGTGAGGGATCTGGAGTGGATTCTCTTCGTTCCAGCCAAAGGGAAGCAGCTCTGACCAAGTTCCGACTGAAGCGGAAAGATAGATGCTTTGAGAAGAAGGTTAGATACCAAAGCCGGAAAATACTGGCAGAGAAGCGGCCAAGAGTGAAAGGTCAATTCGTGCATAGAGCTCATACTGATCCTCCAACTGCCAATGCTGTTGGTTCATGA

Protein Analysis

526

Amino Acids

57.71

Weight (kDa)

6.05

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 471 - 512 5.9e-17 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1310
Acc36I ACCTGC 1 cut(s) 1310
AccII CGCG 1 cut(s) 241
AciI CCGC 4 cut(s) 54, 1263, 1444, 1507
AclWI GGATC 2 cut(s) 1387, 1544
AcoI YGGCCR 3 cut(s) 1063, 1329, 1508
AcsI RAATTY 1 cut(s) 528
AcuI CTGAAG 1 cut(s) 1460
AfaI GTAC 5 cut(s) 238, 412, 432, 835, 1240
AfiI CCNNNNNNNGG 6 cut(s) 580, 596, 597, 783, 941, 1410
AhlI ACTAGT 1 cut(s) 959
AjnI CCWGG 1 cut(s) 1189
AjuI GAANNNNNNNTTGG 2 cut(s) 579, 611
Alw21I GWGCWC 2 cut(s) 1073, 1543
Alw26I GTCTC 1 cut(s) 12
AlwI GGATC 2 cut(s) 1387, 1544
AlwNI CAGNNNCTG 1 cut(s) 1340
AoxI GGCC 7 cut(s) 51, 632, 931, 1063, 1302, 1329, 1508
ApeKI GCWGC 6 cut(s) 106, 203, 230, 292, 1202, 1418
ApoI RAATTY 1 cut(s) 528
AspLEI GCGC 2 cut(s) 243, 1268
AspS9I GGNCC 3 cut(s) 51, 633, 932
AsuHPI GGTGA 1 cut(s) 1334
BalI TGGCCA 2 cut(s) 1065, 1331
BanII GRGCYC 1 cut(s) 1543
BarI GAAGNNNNNNTAC 2 cut(s) 1460, 1492
Bbv12I GWGCWC 2 cut(s) 1073, 1543
BbvI GCAGC 6 cut(s) 118, 215, 217, 304, 1214, 1430
BccI CCATC 7 cut(s) 665, 710, 890, 932, 1015, 1289, 1321
BciT130I CCWGG 1 cut(s) 1191
BciVI GTATCC 2 cut(s) 527, 983
BcoDI GTCTC 1 cut(s) 12
BcuI ACTAGT 1 cut(s) 959
BfaI CTAG 4 cut(s) 131, 135, 555, 960
BfmI CTRYAG 2 cut(s) 1200, 1314
BfuAI ACCTGC 1 cut(s) 1310
BfuI GTATCC 2 cut(s) 527, 983
BglI GCCNNNNNGGC 1 cut(s) 1310
BisI GCNGC 9 cut(s) 54, 107, 204, 231, 293, 1203, 1264, 1419, 1508
BlsI GCNGC 9 cut(s) 55, 108, 205, 232, 294, 1204, 1265, 1420, 1509
Bme1390I CCNGG 1 cut(s) 1191
BmgT120I GGNCC 3 cut(s) 51, 633, 932
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 1191
BmrI ACTGGG 1 cut(s) 825
BmsI GCATC 4 cut(s) 265, 757, 838, 1445
BmuI ACTGGG 1 cut(s) 825
BoxI GACNNNNGTC 1 cut(s) 1359
BpmI CTGGAG 2 cut(s) 1187, 1404
BpuEI CTTGAG 1 cut(s) 448
BsaJI CCNNGG 1 cut(s) 928
BsaXI ACNNNNNCTCC 2 cut(s) 1537, 1567
Bsc4I CCNNNNNNNGG 6 cut(s) 580, 596, 597, 783, 941, 1410
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 4 cut(s) 831, 1170, 1305, 1500
Bse3DI GCAATG 2 cut(s) 1240, 1297
BseBI CCWGG 1 cut(s) 1191
BseDI CCNNGG 1 cut(s) 928
BseGI GGATG 6 cut(s) 445, 721, 853, 920, 924, 1007
BseLI CCNNNNNNNGG 6 cut(s) 580, 596, 597, 783, 941, 1410
BseMI GCAATG 2 cut(s) 1240, 1297
BseNI ACTGG 4 cut(s) 831, 1170, 1305, 1500
BseRI GAGGAG 2 cut(s) 138, 755
BseXI GCAGC 6 cut(s) 118, 215, 217, 304, 1214, 1430
BsgI GTGCAG 1 cut(s) 735
Bsh1236I CGCG 1 cut(s) 241
BshFI GGCC 7 cut(s) 53, 634, 933, 1065, 1304, 1331, 1510
BsiHKAI GWGCWC 2 cut(s) 1073, 1543
BsiSI CCGG 2 cut(s) 74, 1486
BslFI GGGAC 2 cut(s) 620, 816
BslI CCNNNNNNNGG 6 cut(s) 580, 596, 597, 783, 941, 1410
BsmAI GTCTC 1 cut(s) 12
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 2 cut(s) 620, 816
BsnI GGCC 7 cut(s) 53, 634, 933, 1065, 1304, 1331, 1510
Bsp1286I GDGCHC 2 cut(s) 1073, 1543
Bsp143I GATC 2 cut(s) 1379, 1549
BspACI CCGC 4 cut(s) 54, 1263, 1444, 1507
BspANI GGCC 7 cut(s) 53, 634, 933, 1065, 1304, 1331, 1510
BspFNI CGCG 1 cut(s) 241
BspHI TCATGA 1 cut(s) 1577
BspLI GGNNCC 1 cut(s) 52
BspMAI CTGCAG 1 cut(s) 1204
BspMI ACCTGC 1 cut(s) 1310
BspPI GGATC 2 cut(s) 1387, 1544
BsrDI GCAATG 2 cut(s) 1240, 1297
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 4 cut(s) 831, 1170, 1305, 1500
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 928
BssMI GATC 2 cut(s) 1379, 1549
Bst2UI CCWGG 1 cut(s) 1191
Bst4CI ACNGT 5 cut(s) 163, 699, 786, 995, 1243
Bst6I CTCTTC 1 cut(s) 1401
BstAPI GCANNNNNTGC 1 cut(s) 275
BstC8I GCNNGC 3 cut(s) 41, 853, 912
BstF5I GGATG 6 cut(s) 445, 721, 853, 920, 924, 1007
BstFNI CGCG 1 cut(s) 241
BstHHI GCGC 2 cut(s) 243, 1268
BstKTI GATC 2 cut(s) 1382, 1552
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 2 cut(s) 1379, 1549
BstMWI GCNNNNNNNGC 4 cut(s) 275, 551, 567, 1310
BstNI CCWGG 1 cut(s) 1191
BstNSI RCATGY 2 cut(s) 43, 113
BstPAI GACNNNNGTC 1 cut(s) 1359
BstSCI CCNGG 1 cut(s) 1189
BstSFI CTRYAG 2 cut(s) 1200, 1314
BstUI CGCG 1 cut(s) 241
BstV1I GCAGC 6 cut(s) 118, 215, 217, 304, 1214, 1430
BstX2I RGATCY 1 cut(s) 1379
BstYI RGATCY 1 cut(s) 1379
BsuI GTATCC 2 cut(s) 527, 983
BsuRI GGCC 7 cut(s) 53, 634, 933, 1065, 1304, 1331, 1510
BtsCI GGATG 6 cut(s) 445, 721, 853, 920, 924, 1007
BtsI GCAGTG 1 cut(s) 313
BtsIMutI CAGTG 2 cut(s) 313, 752
BveI ACCTGC 1 cut(s) 1310
Cac8I GCNNGC 3 cut(s) 41, 853, 912
CaiI CAGNNNCTG 1 cut(s) 1340
CciI TCATGA 1 cut(s) 1577
CfoI GCGC 2 cut(s) 243, 1268
Cfr10I RCCGGY 1 cut(s) 73
Cfr13I GGNCC 3 cut(s) 51, 633, 932
CsiI ACCWGGT 1 cut(s) 1189
Csp6I GTAC 5 cut(s) 237, 411, 431, 834, 1239
CviAII CATG 6 cut(s) 40, 110, 383, 863, 1151, 1578
CviQI GTAC 5 cut(s) 237, 411, 431, 834, 1239
DpnI GATC 2 cut(s) 1381, 1551
DpnII GATC 2 cut(s) 1379, 1549
EaeI YGGCCR 3 cut(s) 1063, 1329, 1508
Eam1104I CTCTTC 1 cut(s) 1401
EarI CTCTTC 1 cut(s) 1401
Ecl136II GAGCTC 1 cut(s) 1541
Eco24I GRGCYC 1 cut(s) 1543
Eco53kI GAGCTC 1 cut(s) 1541
Eco57I CTGAAG 1 cut(s) 1460
EcoICRI GAGCTC 1 cut(s) 1541
EcoO109I RGGNCCY 1 cut(s) 932
EcoRII CCWGG 1 cut(s) 1189
EcoT38I GRGCYC 1 cut(s) 1543
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 6 cut(s) 43, 113, 386, 866, 1154, 1581
FaqI GGGAC 2 cut(s) 620, 816
FatI CATG 6 cut(s) 39, 109, 382, 862, 1150, 1577
FauNDI CATATG 1 cut(s) 1270
Fnu4HI GCNGC 9 cut(s) 54, 107, 204, 231, 293, 1203, 1264, 1419, 1508
FokI GGATG 6 cut(s) 452, 728, 860, 907, 911, 994
FriOI GRGCYC 1 cut(s) 1543
Fsp4HI GCNGC 9 cut(s) 54, 107, 204, 231, 293, 1203, 1264, 1419, 1508
FspBI CTAG 4 cut(s) 131, 135, 555, 960
GlaI GCGC 2 cut(s) 242, 1267
GluI GCNGC 9 cut(s) 54, 107, 204, 231, 293, 1203, 1264, 1419, 1508
GsuI CTGGAG 2 cut(s) 1187, 1404
HaeIII GGCC 7 cut(s) 53, 634, 933, 1065, 1304, 1331, 1510
HapII CCGG 2 cut(s) 74, 1486
HhaI GCGC 2 cut(s) 243, 1268
Hin1II CATG 6 cut(s) 43, 113, 386, 866, 1154, 1581
Hin6I GCGC 2 cut(s) 241, 1266
HinP1I GCGC 2 cut(s) 241, 1266
HinfI GANTC 7 cut(s) 14, 255, 371, 468, 917, 1109, 1391
HpaII CCGG 2 cut(s) 74, 1486
HphI GGTGA 1 cut(s) 1334
Hpy166II GTNNAC 3 cut(s) 140, 722, 886
Hpy188III TCNNGA 8 cut(s) 11, 79, 465, 506, 820, 1373, 1383, 1578
Hpy8I GTNNAC 3 cut(s) 140, 722, 886
HpyAV CCTTC 3 cut(s) 114, 506, 1462
HpyCH4III ACNGT 5 cut(s) 163, 699, 786, 995, 1243
HpyF10VI GCNNNNNNNGC 4 cut(s) 275, 551, 567, 1310
Hsp92II CATG 6 cut(s) 43, 113, 386, 866, 1154, 1581
HspAI GCGC 2 cut(s) 241, 1266
Kzo9I GATC 2 cut(s) 1379, 1549
LmnI GCTCC 2 cut(s) 151, 1177
Lsp1109I GCAGC 6 cut(s) 118, 215, 217, 304, 1214, 1430
LweI GCATC 4 cut(s) 265, 757, 838, 1445
MabI ACCWGGT 1 cut(s) 1189
MaeI CTAG 4 cut(s) 131, 135, 555, 960
MaeIII GTNAC 2 cut(s) 733, 955
MalI GATC 2 cut(s) 1381, 1551
MboI GATC 2 cut(s) 1379, 1549
MboII GAAGA 4 cut(s) 359, 548, 1388, 1477
MfeI CAATTG 1 cut(s) 628
MflI RGATCY 1 cut(s) 1379
MhlI GDGCHC 2 cut(s) 1073, 1543
MlsI TGGCCA 2 cut(s) 1065, 1331
MluCI AATT 5 cut(s) 316, 528, 628, 856, 1526
MluNI TGGCCA 2 cut(s) 1065, 1331
MlyI GAGTC 3 cut(s) 8, 462, 1118
MmeI TCCRAC 2 cut(s) 1459, 1580
Mox20I TGGCCA 2 cut(s) 1065, 1331
MscI TGGCCA 2 cut(s) 1065, 1331
MseI TTAA 4 cut(s) 69, 158, 450, 704
MslI CAYNNNNRTG 3 cut(s) 219, 387, 1257
Msp20I TGGCCA 2 cut(s) 1065, 1331
MspI CCGG 2 cut(s) 74, 1486
MspR9I CCNGG 1 cut(s) 1191
MunI CAATTG 1 cut(s) 628
MvaI CCWGG 1 cut(s) 1191
MvnI CGCG 1 cut(s) 241
MwoI GCNNNNNNNGC 4 cut(s) 275, 551, 567, 1310
NdeI CATATG 1 cut(s) 1270
NdeII GATC 2 cut(s) 1379, 1549
NlaIII CATG 6 cut(s) 43, 113, 386, 866, 1154, 1581
NlaIV GGNNCC 1 cut(s) 52
NmuCI GTSAC 2 cut(s) 733, 955
NspI RCATGY 2 cut(s) 43, 113
PaeI GCATGC 1 cut(s) 43
PagI TCATGA 1 cut(s) 1577
PaqCI CACCTGC 1 cut(s) 1310
PcsI WCGNNNNNNNCGW 1 cut(s) 1369
PfeI GAWTC 4 cut(s) 255, 371, 917, 1391
PkrI GCNGC 9 cut(s) 55, 108, 205, 232, 294, 1204, 1265, 1420, 1509
PleI GAGTC 3 cut(s) 8, 462, 1117
PpsI GAGTC 3 cut(s) 8, 462, 1117
PshAI GACNNNNGTC 1 cut(s) 1359
Psp124BI GAGCTC 1 cut(s) 1543
Psp6I CCWGG 1 cut(s) 1189
PspGI CCWGG 1 cut(s) 1189
PspN4I GGNNCC 1 cut(s) 52
PspPI GGNCC 3 cut(s) 51, 633, 932
PstI CTGCAG 1 cut(s) 1204
PstNI CAGNNNCTG 1 cut(s) 1340
PsuI RGATCY 1 cut(s) 1379
RsaI GTAC 5 cut(s) 238, 412, 432, 835, 1240
RsaNI GTAC 5 cut(s) 237, 411, 431, 834, 1239
RseI CAYNNNNRTG 3 cut(s) 219, 387, 1257
SacI GAGCTC 1 cut(s) 1543
SaqAI TTAA 4 cut(s) 69, 158, 450, 704
SatI GCNGC 9 cut(s) 54, 107, 204, 231, 293, 1203, 1264, 1419, 1508
Sau3AI GATC 2 cut(s) 1379, 1549
Sau96I GGNCC 3 cut(s) 51, 633, 932
SchI GAGTC 3 cut(s) 8, 462, 1118
ScrFI CCNGG 1 cut(s) 1191
SduI GDGCHC 2 cut(s) 1073, 1543
SexAI ACCWGGT 1 cut(s) 1189
SfaNI GCATC 4 cut(s) 265, 757, 838, 1445
SfcI CTRYAG 2 cut(s) 1200, 1314
SmiMI CAYNNNNRTG 3 cut(s) 219, 387, 1257
SmlI CTYRAG 2 cut(s) 9, 463
SmoI CTYRAG 2 cut(s) 9, 463
SpeI ACTAGT 1 cut(s) 959
SphI GCATGC 1 cut(s) 43
Sse9I AATT 5 cut(s) 316, 528, 628, 856, 1526
SsiI CCGC 4 cut(s) 54, 1263, 1444, 1507
SspI AATATT 1 cut(s) 404
SspMI CTAG 4 cut(s) 131, 135, 555, 960
SstI GAGCTC 1 cut(s) 1543
StyD4I CCNGG 1 cut(s) 1189
TaaI ACNGT 5 cut(s) 163, 699, 786, 995, 1243
TasI AATT 5 cut(s) 316, 528, 628, 856, 1526
TatI WGTACW 1 cut(s) 833
TauI GCSGC 3 cut(s) 56, 1266, 1510
TfiI GAWTC 4 cut(s) 255, 371, 917, 1391
Tru1I TTAA 4 cut(s) 69, 158, 450, 704
Tru9I TTAA 4 cut(s) 69, 158, 450, 704
TscAI CASTG 2 cut(s) 313, 759
TseFI GTSAC 2 cut(s) 733, 955
TseI GCWGC 6 cut(s) 106, 203, 230, 292, 1202, 1418
Tsp45I GTSAC 2 cut(s) 733, 955
TspDTI ATGAA 6 cut(s) 384, 456, 525, 692, 909, 1566
TspRI CASTG 2 cut(s) 313, 759
XapI RAATTY 1 cut(s) 528
XceI RCATGY 2 cut(s) 43, 113
XspI CTAG 4 cut(s) 131, 135, 555, 960
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.