Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002067

Physical Location & Seq

Genomic Coordinates Reverse (-)

21061047 .. 21075846

Gene Structure 14800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG112000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGTGTGGAGAAGGCACACTTGATGCCCAAGATATATCGCAGCTAAAGTATGGCAGTGCTTCTAATTTGAGCAATACAGATATTGAAATGCTTGAAGATTGTGATAGATTGGACAATGAATCTGTTGTGCATGAGAGTGAAACTAAAGAGAATTCAAGTACATTTGGCTTCCAATATGAGGTTGAACCGTCAGTTGGGGTTAGGGACTTGCTTTGCACCTTTGACAATTGGCCCAACTGCAACGTTGGAAGTTCTAACAGAAAAGATGATGGTATGAAGCACTTTGGATTGGAACTGTCTTTAAGAAGTTCGAATGGTTCACACAAGGAAGTGACTGAGGAGAGGCCTGCACCGAAACATTCTGATGCCTCTACCTTTTCACGGAGGCAAGAGCTGTCGAGAAGAGAAAAGAAGAAGAATGAAGGTATCCAAGCAGAAATTTGTGAAGAAAAAGCTAAAACTGCTAGTGGAACTCACAGCTTCCAATATGAGGTTGAACAGTCAGTTGGGGTTAGGGACTTGCTTTGCACCTTTGACAATTGGCCCAACTGCAACGTTGGAAGTTCTAACAGAAAAGATGATGGTATGAAGCACTTTGGATTGGAACTGTCTTTAAGAAGTTCGAATGGTTCACACAAGGAAGTGATTGAGGAGAGGCCTGCACCGAAACATTCTGATGCCTCTACCTTTTCACGTATCAATGCCATTGATCCAAAGACAAAGAAGATCTTGCAACTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048511 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

247

Amino Acids

27.64

Weight (kDa)

5.36

Isoelectric Point (pI)

51.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46670 AT2G46790 AT2G46790 AT2G46790 AT2G46790 AT2G46790
fragaria_vesca	FvH4_7g17760 FvH4_7g17760 FvH4_7g17760 FvH4_7g17760 FvH4_7g17760
malus_domestica	MD01G1088900.v1.1
prunus_persica	Prupe.2G198500_v2.0.a1 Prupe.2G198500_v2.0.a1
pyrus_communis	pycom01g11320
rosa_chinensis	RchiOBHm_Chr1g0361151
rosa_laevigata	RLG00000027745
rosa_multiflora	Rmu_co8346237.1_g000001 Rmu_sc0000309.1_g000018 Rmu_sc0000427.1_g000034 Rmu_sc0001816.1_g000014 Rmu_sc0002872.1_g000001 Rmu_sc0006147.1_g000005 Rmu_sc0035862.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295360 Rroxscaffold_6G00419120
rosa_rugosa	Rorug01G0286500 Rorug01G0286500 Rorug01G0286500 Rorug01G0286500
rosa_samantha	Rh1AG206100 Rh1AG297800 Rh1BG261800 Rh1CG191000 Rh1CG279200 Rh1DG291700 Rh2BG478900 Rh2DG487700 Rh2DG555300 Rh3AG290400 Rh4AG103700 Rh4AG103800 Rh4CG112000
rosa_wichuraiana	Rw1G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	2 cut(s)	243, 555
AclWI	GGATC	1 cut(s)	704
AcsI	RAATTY	2 cut(s)	151, 438
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	4 cut(s)	178, 194, 381, 490
AgsI	TTSAA	5 cut(s)	86, 95, 156, 185, 497
AjuI	GAANNNNNNNTTGG	4 cut(s)	177, 209, 489, 521
AluBI	AGCT	4 cut(s)	43, 394, 455, 480
AluI	AGCT	4 cut(s)	43, 394, 455, 480
AlwI	GGATC	1 cut(s)	704
AoxI	GGCC	4 cut(s)	230, 344, 542, 656
ApeKI	GCWGC	1 cut(s)	40
ApoI	RAATTY	2 cut(s)	151, 438
AspS9I	GGNCC	2 cut(s)	231, 543
AsuII	TTCGAA	2 cut(s)	311, 623
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	2 cut(s)	263, 575
BciVI	GTATCC	1 cut(s)	437
BfaI	CTAG	1 cut(s)	465
BfuI	GTATCC	1 cut(s)	437
BglII	AGATCT	1 cut(s)	726
BisI	GCNGC	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	42
BmgT120I	GGNCC	2 cut(s)	231, 543
BmsI	GCATC	3 cut(s)	13, 355, 667
Bpu14I	TTCGAA	2 cut(s)	311, 623
BsaAI	YACGTR	1 cut(s)	695
Bsc4I	CCNNNNNNNGG	4 cut(s)	178, 194, 381, 490
BseLI	CCNNNNNNNGG	4 cut(s)	178, 194, 381, 490
BseMII	CTCAG	1 cut(s)	327
BseRI	GAGGAG	2 cut(s)	353, 665
BseXI	GCAGC	1 cut(s)	52
BsgI	GTGCAG	2 cut(s)	333, 645
BshFI	GGCC	4 cut(s)	232, 346, 544, 658
BslFI	GGGAC	2 cut(s)	218, 530
BslI	CCNNNNNNNGG	4 cut(s)	178, 194, 381, 490
BsmFI	GGGAC	2 cut(s)	218, 530
BsnI	GGCC	4 cut(s)	232, 346, 544, 658
Bsp119I	TTCGAA	2 cut(s)	311, 623
Bsp143I	GATC	2 cut(s)	709, 726
BspANI	GGCC	4 cut(s)	232, 346, 544, 658
BspCNI	CTCAG	1 cut(s)	328
BspPI	GGATC	1 cut(s)	704
BspT104I	TTCGAA	2 cut(s)	311, 623
BssMI	GATC	2 cut(s)	709, 726
Bst4CI	ACNGT	4 cut(s)	189, 297, 501, 609
Bst6I	CTCTTC	1 cut(s)	397
BstBAI	YACGTR	1 cut(s)	695
BstBI	TTCGAA	2 cut(s)	311, 623
BstC8I	GCNNGC	2 cut(s)	348, 660
BstDEI	CTNAG	1 cut(s)	336
BstKTI	GATC	2 cut(s)	712, 729
BstMBI	GATC	2 cut(s)	709, 726
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstV1I	GCAGC	1 cut(s)	52
BstX2I	RGATCY	1 cut(s)	726
BstYI	RGATCY	1 cut(s)	726
BsuI	GTATCC	1 cut(s)	437
BsuRI	GGCC	4 cut(s)	232, 346, 544, 658
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	61
Cac8I	GCNNGC	2 cut(s)	348, 660
Cfr13I	GGNCC	2 cut(s)	231, 543
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	9 cut(s)	43, 168, 232, 346, 394, 455, 480, 544, 658
CviKI_1	RGCY	9 cut(s)	43, 168, 232, 346, 394, 455, 480, 544, 658
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	2 cut(s)	711, 728
DpnII	GATC	2 cut(s)	709, 726
Eam1104I	CTCTTC	1 cut(s)	397
EarI	CTCTTC	1 cut(s)	397
Eco147I	AGGCCT	2 cut(s)	346, 658
EcoRI	GAATTC	1 cut(s)	151
FaeI	CATG	1 cut(s)	134
FaiI	YATR	7 cut(s)	35, 51, 132, 177, 275, 489, 587
FalI	AAGNNNNNCTT	2 cut(s)	35, 713
FaqI	GGGAC	2 cut(s)	218, 530
FatI	CATG	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	41
FspBI	CTAG	1 cut(s)	465
GluI	GCNGC	1 cut(s)	41
HaeIII	GGCC	4 cut(s)	232, 346, 544, 658
Hin1II	CATG	1 cut(s)	134
HinfI	GANTC	1 cut(s)	119
Hpy166II	GTNNAC	2 cut(s)	320, 632
Hpy188I	TCNGA	2 cut(s)	364, 676
Hpy188III	TCNNGA	1 cut(s)	399
Hpy8I	GTNNAC	2 cut(s)	320, 632
HpyAV	CCTTC	2 cut(s)	5, 416
HpyCH4III	ACNGT	4 cut(s)	189, 297, 501, 609
HpyCH4IV	ACGT	3 cut(s)	243, 555, 694
HpyCH4V	TGCA	8 cut(s)	130, 216, 240, 350, 528, 552, 662, 733
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	3 cut(s)	243, 555, 694
Hsp92II	CATG	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	709, 726
LpnPI	CCDG	2 cut(s)	360, 672
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	3 cut(s)	13, 355, 667
MaeI	CTAG	1 cut(s)	465
MaeII	ACGT	3 cut(s)	243, 555, 694
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	2 cut(s)	711, 728
MboI	GATC	2 cut(s)	709, 726
MboII	GAAGA	6 cut(s)	107, 414, 424, 427, 458, 736
MfeI	CAATTG	2 cut(s)	226, 538
MflI	RGATCY	1 cut(s)	726
MluCI	AATT	5 cut(s)	64, 151, 226, 438, 538
MmeI	TCCRAC	2 cut(s)	226, 538
MnlI	CCTC	9 cut(s)	172, 331, 336, 378, 379, 484, 643, 648, 691
MseI	TTAA	2 cut(s)	302, 614
MslI	CAYNNNNRTG	3 cut(s)	135, 363, 675
MunI	CAATTG	2 cut(s)	226, 538
MwoI	GCNNNNNNNGC	1 cut(s)	461
NdeII	GATC	2 cut(s)	709, 726
NlaIII	CATG	1 cut(s)	134
NmuCI	GTSAC	1 cut(s)	331
NspV	TTCGAA	2 cut(s)	311, 623
PceI	AGGCCT	2 cut(s)	346, 658
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	42
Ppu21I	YACGTR	1 cut(s)	695
Psp1406I	AACGTT	2 cut(s)	243, 555
PspPI	GGNCC	2 cut(s)	231, 543
PsuI	RGATCY	1 cut(s)	726
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
RseI	CAYNNNNRTG	3 cut(s)	135, 363, 675
SaqAI	TTAA	2 cut(s)	302, 614
SatI	GCNGC	1 cut(s)	41
Sau3AI	GATC	2 cut(s)	709, 726
Sau96I	GGNCC	2 cut(s)	231, 543
SfaNI	GCATC	3 cut(s)	13, 355, 667
SfuI	TTCGAA	2 cut(s)	311, 623
SmiMI	CAYNNNNRTG	3 cut(s)	135, 363, 675
Sse9I	AATT	5 cut(s)	64, 151, 226, 438, 538
SseBI	AGGCCT	2 cut(s)	346, 658
SspMI	CTAG	1 cut(s)	465
StuI	AGGCCT	2 cut(s)	346, 658
TaaI	ACNGT	4 cut(s)	189, 297, 501, 609
TaiI	ACGT	3 cut(s)	246, 558, 697
TaqI	TCGA	3 cut(s)	311, 398, 623
TasI	AATT	5 cut(s)	64, 151, 226, 438, 538
TatI	WGTACW	1 cut(s)	158
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	2 cut(s)	302, 614
Tru9I	TTAA	2 cut(s)	302, 614
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	1 cut(s)	40
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	4 cut(s)	132, 290, 435, 602
TspGWI	ACGGA	1 cut(s)	397
TspRI	CASTG	1 cut(s)	61
XapI	RAATTY	2 cut(s)	151, 438
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.