Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002067

Physical Location & Seq

Genomic Coordinates Forward (+)

39024639 .. 39032135

Gene Structure 7497 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG206100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGACAAACGAGGGCAGAATCATTCTGTCTATTCTTGCTCTGATACCAGACGGTGTTTGGAAGAGGTTGGCTGCAGTGCTTGGTATTCGAGCGTTGAGTGGTGGTGGTCCTATGCGGGCGAAGCTTTCTAGTGGATGTGTTGGGTACAATTTTGGTCTTCTGGAGCAGTCAAGGCTGCTGGTGTCGTTGAAACTTTCATGGTTCAGTGATGCCCAAGATATATCGCAGCTAAAGTATGGCAGTGCTTCTAATTTGAGCAATACAGATATTGAAATGCTTGAAGATTGTGATAGATTGGACAATGAATCTGTTGTGCATGAGAGTGAAACTAAAGAGAATTCAAGTACATTTGGGTCAGATATTGTACCTTTGGATGAAGCCCTTAACTTAGTTGCCTCAAGACTGAGAGAGGAAAATGTTTCTGCTAAAACAATGGTTCAAGATGAAGGTATCCAAGCAGAAATTTGTGAAGAAAAAGCTAAAACTGCTAGTGGAACTCACAGCTTCCAATATGAGGTTGAACCGTCAGTTGGGGTTAGGGACTTGCTTTGCACCTTTGACAATTGGCCCAACTGCAACGTTGGAAGTTCTAACAGAAAAGATGATGGTATGAAGCACTTTGGATTGGAACTGTCTTTAAGAAGTTCGAATGGTTCACACAAGGAAGTGACTGAGGAGAGGCCTACACCGAAACATTCTGATGCCTCTACCTTTTCACGGGTGCTTAGTGTTGGTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048511 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

246

Amino Acids

26.84

Weight (kDa)

4.97

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46670 AT2G46790 AT2G46790 AT2G46790 AT2G46790 AT2G46790
fragaria_vesca	FvH4_7g17760 FvH4_7g17760 FvH4_7g17760 FvH4_7g17760 FvH4_7g17760
malus_domestica	MD01G1088900.v1.1
prunus_persica	Prupe.2G198500_v2.0.a1 Prupe.2G198500_v2.0.a1
pyrus_communis	pycom01g11320
rosa_chinensis	RchiOBHm_Chr1g0361151
rosa_laevigata	RLG00000027745
rosa_multiflora	Rmu_co8346237.1_g000001 Rmu_sc0000309.1_g000018 Rmu_sc0000427.1_g000034 Rmu_sc0001816.1_g000014 Rmu_sc0002872.1_g000001 Rmu_sc0006147.1_g000005 Rmu_sc0035862.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295360 Rroxscaffold_6G00419120
rosa_rugosa	Rorug01G0286500 Rorug01G0286500 Rorug01G0286500 Rorug01G0286500
rosa_samantha	Rh1AG206100 Rh1AG297800 Rh1BG261800 Rh1CG191000 Rh1CG279200 Rh1DG291700 Rh2BG478900 Rh2DG487700 Rh2DG555300 Rh3AG290400 Rh4AG103700 Rh4AG103800 Rh4CG112000
rosa_wichuraiana	Rw1G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	115
AclI	AACGTT	1 cut(s)	579
AcsI	RAATTY	2 cut(s)	337, 462
AfaI	GTAC	3 cut(s)	146, 346, 366
AfiI	CCNNNNNNNGG	3 cut(s)	514, 530, 717
AgsI	TTSAA	6 cut(s)	190, 272, 281, 342, 440, 521
AjuI	GAANNNNNNNTTGG	2 cut(s)	513, 545
AluBI	AGCT	4 cut(s)	124, 229, 479, 504
AluI	AGCT	4 cut(s)	124, 229, 479, 504
AoxI	GGCC	2 cut(s)	566, 680
ApeKI	GCWGC	3 cut(s)	71, 175, 226
ApoI	RAATTY	2 cut(s)	337, 462
AspS9I	GGNCC	3 cut(s)	107, 567, 734
AsuII	TTCGAA	1 cut(s)	647
AvaII	GGWCC	2 cut(s)	107, 734
BbsI	GAAGAC	1 cut(s)	149
BbvI	GCAGC	3 cut(s)	58, 162, 238
BccI	CCATC	1 cut(s)	599
BciVI	GTATCC	1 cut(s)	461
BfaI	CTAG	2 cut(s)	129, 489
BfmI	CTRYAG	1 cut(s)	72
BfuI	GTATCC	1 cut(s)	461
BisI	GCNGC	3 cut(s)	72, 176, 227
BlsI	GCNGC	3 cut(s)	73, 177, 228
Bme18I	GGWCC	2 cut(s)	107, 734
BmgT120I	GGNCC	3 cut(s)	107, 567, 734
BmsI	GCATC	2 cut(s)	199, 691
BpiI	GAAGAC	1 cut(s)	149
BpmI	CTGGAG	1 cut(s)	182
Bpu14I	TTCGAA	1 cut(s)	647
BpuEI	CTTGAG	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	3 cut(s)	514, 530, 717
BseGI	GGATG	2 cut(s)	140, 379
BseLI	CCNNNNNNNGG	3 cut(s)	514, 530, 717
BseMII	CTCAG	2 cut(s)	395, 663
BseRI	GAGGAG	1 cut(s)	689
BseXI	GCAGC	3 cut(s)	58, 162, 238
BshFI	GGCC	2 cut(s)	568, 682
BslFI	GGGAC	1 cut(s)	554
BslI	CCNNNNNNNGG	3 cut(s)	514, 530, 717
BsmFI	GGGAC	1 cut(s)	554
BsnI	GGCC	2 cut(s)	568, 682
Bsp119I	TTCGAA	1 cut(s)	647
BspACI	CCGC	1 cut(s)	115
BspANI	GGCC	2 cut(s)	568, 682
BspCNI	CTCAG	2 cut(s)	396, 664
BspMAI	CTGCAG	1 cut(s)	76
BspT104I	TTCGAA	1 cut(s)	647
Bst4CI	ACNGT	3 cut(s)	53, 525, 633
Bst6I	CTCTTC	1 cut(s)	56
BstBI	TTCGAA	1 cut(s)	647
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	4 cut(s)	388, 404, 672, 725
BstF5I	GGATG	2 cut(s)	140, 379
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 172, 485
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	3 cut(s)	58, 162, 238
BstV2I	GAAGAC	1 cut(s)	149
BsuI	GTATCC	1 cut(s)	461
BsuRI	GGCC	2 cut(s)	568, 682
BtsCI	GGATG	2 cut(s)	140, 379
BtsI	GCAGTG	2 cut(s)	81, 247
BtsIMutI	CAGTG	3 cut(s)	81, 211, 247
Cac8I	GCNNGC	1 cut(s)	117
Cfr13I	GGNCC	3 cut(s)	107, 567, 734
Csp6I	GTAC	3 cut(s)	145, 345, 365
CviAII	CATG	2 cut(s)	198, 317
CviJI	RGCY	9 cut(s)	71, 124, 175, 229, 380, 479, 504, 568, 682
CviKI_1	RGCY	9 cut(s)	71, 124, 175, 229, 380, 479, 504, 568, 682
CviQI	GTAC	3 cut(s)	145, 345, 365
DdeI	CTNAG	4 cut(s)	388, 404, 672, 725
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco147I	AGGCCT	1 cut(s)	682
Eco47I	GGWCC	2 cut(s)	107, 734
EcoRI	GAATTC	1 cut(s)	337
FaeI	CATG	2 cut(s)	201, 320
FaiI	YATR	8 cut(s)	113, 199, 221, 237, 318, 513, 611, 739
FaqI	GGGAC	1 cut(s)	554
FatI	CATG	2 cut(s)	197, 316
FauI	CCCGC	1 cut(s)	108
Fnu4HI	GCNGC	3 cut(s)	72, 176, 227
FokI	GGATG	2 cut(s)	147, 386
Fsp4HI	GCNGC	3 cut(s)	72, 176, 227
FspBI	CTAG	2 cut(s)	129, 489
GluI	GCNGC	3 cut(s)	72, 176, 227
GsuI	CTGGAG	1 cut(s)	182
HaeIII	GGCC	2 cut(s)	568, 682
Hin1II	CATG	2 cut(s)	201, 320
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	2 cut(s)	18, 305
Hpy166II	GTNNAC	1 cut(s)	656
Hpy188I	TCNGA	3 cut(s)	42, 358, 700
Hpy188III	TCNNGA	3 cut(s)	161, 399, 440
Hpy8I	GTNNAC	1 cut(s)	656
HpyAV	CCTTC	1 cut(s)	440
HpyCH4III	ACNGT	3 cut(s)	53, 525, 633
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	4 cut(s)	74, 316, 552, 576
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 172, 485
HpyF3I	CTNAG	4 cut(s)	388, 404, 672, 725
HpySE526I	ACGT	1 cut(s)	579
Hsp92II	CATG	2 cut(s)	201, 320
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	3 cut(s)	60, 146, 164
Lsp1109I	GCAGC	3 cut(s)	58, 162, 238
LweI	GCATC	2 cut(s)	199, 691
MaeI	CTAG	2 cut(s)	129, 489
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	1 cut(s)	667
MboII	GAAGA	4 cut(s)	73, 149, 293, 482
MfeI	CAATTG	1 cut(s)	562
MluCI	AATT	5 cut(s)	148, 250, 337, 462, 562
MmeI	TCCRAC	1 cut(s)	562
MnlI	CCTC	8 cut(s)	4, 57, 403, 406, 508, 667, 672, 715
MseI	TTAA	2 cut(s)	384, 638
MslI	CAYNNNNRTG	2 cut(s)	321, 699
MunI	CAATTG	1 cut(s)	562
MwoI	GCNNNNNNNGC	3 cut(s)	121, 172, 485
NlaIII	CATG	2 cut(s)	201, 320
NmuCI	GTSAC	1 cut(s)	667
NspV	TTCGAA	1 cut(s)	647
PceI	AGGCCT	1 cut(s)	682
PfeI	GAWTC	2 cut(s)	18, 305
PkrI	GCNGC	3 cut(s)	73, 177, 228
Psp1406I	AACGTT	1 cut(s)	579
PspPI	GGNCC	3 cut(s)	107, 567, 734
PstI	CTGCAG	1 cut(s)	76
RsaI	GTAC	3 cut(s)	146, 346, 366
RsaNI	GTAC	3 cut(s)	145, 345, 365
RseI	CAYNNNNRTG	2 cut(s)	321, 699
SaqAI	TTAA	2 cut(s)	384, 638
SatI	GCNGC	3 cut(s)	72, 176, 227
Sau96I	GGNCC	3 cut(s)	107, 567, 734
SfaNI	GCATC	2 cut(s)	199, 691
SfcI	CTRYAG	1 cut(s)	72
SfuI	TTCGAA	1 cut(s)	647
SinI	GGWCC	2 cut(s)	107, 734
SmiMI	CAYNNNNRTG	2 cut(s)	321, 699
SmlI	CTYRAG	1 cut(s)	397
SmoI	CTYRAG	1 cut(s)	397
Sse9I	AATT	5 cut(s)	148, 250, 337, 462, 562
SseBI	AGGCCT	1 cut(s)	682
SsiI	CCGC	1 cut(s)	115
SspMI	CTAG	2 cut(s)	129, 489
StuI	AGGCCT	1 cut(s)	682
TaaI	ACNGT	3 cut(s)	53, 525, 633
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	2 cut(s)	88, 647
TasI	AATT	5 cut(s)	148, 250, 337, 462, 562
TatI	WGTACW	1 cut(s)	344
TfiI	GAWTC	2 cut(s)	18, 305
Tru1I	TTAA	2 cut(s)	384, 638
Tru9I	TTAA	2 cut(s)	384, 638
TscAI	CASTG	3 cut(s)	81, 211, 247
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	3 cut(s)	71, 175, 226
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	5 cut(s)	186, 318, 390, 459, 626
TspRI	CASTG	3 cut(s)	81, 211, 247
VpaK11BI	GGWCC	2 cut(s)	107, 734
XapI	RAATTY	2 cut(s)	337, 462
XcmI	CCANNNNNNNNNTGG	1 cut(s)	54
XspI	CTAG	2 cut(s)	129, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.