Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002872.1

Orthogroup ID

OG0002067

Physical Location & Seq

Genomic Coordinates Reverse (-)

1966 .. 5439

Gene Structure 3474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002872.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atgatagggttatcagtgcttttgatttggtggaagaggagttctgaagaatgttgccgcttggccacgttaatttcttgtcttttaattaaacatctatgggcatttgaaggctgcttgtctgcatatgatgagaccaatatttattgtggctctgttgatttgtgggtcatgagagattatgatgttgttgattcttgcactaagctatttaacttgaaggtttccaatcagccagagggttcatgccaatcttggttacgaaaacgggatatatcgcagctaaagtatggcagtgcttctaatttgagcaatacagatattgaaatgctcgaagattgtgatagattggacaatgaatctattaactcctgtataactccttacttggaagctgaaagtgcatgcattcaaaaaatgcaggatatatcgcagctaaagtatggcagtgcttctaatttgagcaatacagatattgaaatgcttgaagattgtgatagattggacaatgaatctgttgtgcatgagagtgaaactaaagcccttaacttagttgcctcaagactgagagaggaaaatgtttctgctaaaacaatggttcaagatgaaggtatccaagcagaaatttgtgaagaaaaagctaaaactgctagtggaactcacagcttccaatatgaggttgaaccgtcagttggggttagagaattgctttgcacctttgacaattggcccaactgcaacgttggaagttctaacagaaaagatgatggtatgaagcactttggattggaactgtctttaagaagttcgaatggttcacacaaggaagtgactgaggagaggcctgcaccgaaacattctgatgcctctaccttttcacagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048511 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

294

Amino Acids

33.06

Weight (kDa)

4.72

Isoelectric Point (pI)

54.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46670 AT2G46790 AT2G46790 AT2G46790 AT2G46790 AT2G46790
fragaria_vesca	FvH4_7g17760 FvH4_7g17760 FvH4_7g17760 FvH4_7g17760 FvH4_7g17760
malus_domestica	MD01G1088900.v1.1
prunus_persica	Prupe.2G198500_v2.0.a1 Prupe.2G198500_v2.0.a1
pyrus_communis	pycom01g11320
rosa_chinensis	RchiOBHm_Chr1g0361151
rosa_laevigata	RLG00000027745
rosa_multiflora	Rmu_co8346237.1_g000001 Rmu_sc0000309.1_g000018 Rmu_sc0000427.1_g000034 Rmu_sc0001816.1_g000014 Rmu_sc0002872.1_g000001 Rmu_sc0006147.1_g000005 Rmu_sc0035862.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295360 Rroxscaffold_6G00419120
rosa_rugosa	Rorug01G0286500 Rorug01G0286500 Rorug01G0286500 Rorug01G0286500
rosa_samantha	Rh1AG206100 Rh1AG297800 Rh1BG261800 Rh1CG191000 Rh1CG279200 Rh1DG291700 Rh2BG478900 Rh2DG487700 Rh2DG555300 Rh3AG290400 Rh4AG103700 Rh4AG103800 Rh4CG112000
rosa_wichuraiana	Rw1G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	58
AclI	AACGTT	1 cut(s)	741
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	624
AcuI	CTGAAG	1 cut(s)	66
AfiI	CCNNNNNNNGG	2 cut(s)	676, 692
AgsI	TTSAA	8 cut(s)	110, 220, 326, 413, 479, 488, 602, 683
AjuI	GAANNNNNNNTTGG	2 cut(s)	675, 707
AloI	GAACNNNNNNTCC	2 cut(s)	25, 57
AluBI	AGCT	6 cut(s)	208, 283, 395, 436, 641, 666
AluI	AGCT	6 cut(s)	208, 283, 395, 436, 641, 666
Alw26I	GTCTC	1 cut(s)	128
AoxI	GGCC	3 cut(s)	63, 728, 842
ApeKI	GCWGC	3 cut(s)	114, 280, 433
ApoI	RAATTY	1 cut(s)	624
AspS9I	GGNCC	1 cut(s)	729
AsuII	TTCGAA	1 cut(s)	809
BalI	TGGCCA	1 cut(s)	65
BbvI	GCAGC	3 cut(s)	101, 292, 445
BccI	CCATC	1 cut(s)	761
BciVI	GTATCC	1 cut(s)	623
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	651
BfuI	GTATCC	1 cut(s)	623
BisI	GCNGC	4 cut(s)	58, 115, 281, 434
BlsI	GCNGC	4 cut(s)	59, 116, 282, 435
BmgT120I	GGNCC	1 cut(s)	729
BmsI	GCATC	1 cut(s)	853
Bpu14I	TTCGAA	1 cut(s)	809
BpuEI	CTTGAG	1 cut(s)	544
BsaI	GGTCTC	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	2 cut(s)	676, 692
BseLI	CCNNNNNNNGG	2 cut(s)	676, 692
BseMII	CTCAG	2 cut(s)	557, 825
BseRI	GAGGAG	2 cut(s)	52, 851
BseXI	GCAGC	3 cut(s)	101, 292, 445
BsgI	GTGCAG	1 cut(s)	831
BshFI	GGCC	3 cut(s)	65, 730, 844
BslI	CCNNNNNNNGG	2 cut(s)	676, 692
BsmAI	GTCTC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	408
BsnI	GGCC	3 cut(s)	65, 730, 844
Bso31I	GGTCTC	1 cut(s)	128
Bsp119I	TTCGAA	1 cut(s)	809
BspACI	CCGC	1 cut(s)	58
BspANI	GGCC	3 cut(s)	65, 730, 844
BspCNI	CTCAG	2 cut(s)	558, 826
BspHI	TCATGA	1 cut(s)	171
BspT104I	TTCGAA	1 cut(s)	809
BspTNI	GGTCTC	1 cut(s)	128
Bst4CI	ACNGT	3 cut(s)	687, 795, 882
Bst6I	CTCTTC	1 cut(s)	29
BstBI	TTCGAA	1 cut(s)	809
BstC8I	GCNNGC	2 cut(s)	406, 846
BstDEI	CTNAG	4 cut(s)	204, 550, 566, 834
BstMAI	GTCTC	1 cut(s)	128
BstMWI	GCNNNNNNNGC	2 cut(s)	401, 647
BstNSI	RCATGY	1 cut(s)	408
BstV1I	GCAGC	3 cut(s)	101, 292, 445
BsuI	GTATCC	1 cut(s)	623
BsuRI	GGCC	3 cut(s)	65, 730, 844
BtsI	GCAGTG	2 cut(s)	301, 454
BtsIMutI	CAGTG	3 cut(s)	21, 301, 454
Cac8I	GCNNGC	2 cut(s)	406, 846
CciI	TCATGA	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	729
CviAII	CATG	4 cut(s)	172, 246, 405, 524
DdeI	CTNAG	4 cut(s)	204, 550, 566, 834
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco147I	AGGCCT	1 cut(s)	844
Eco31I	GGTCTC	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	66
EcoT22I	ATGCAT	1 cut(s)	410
FaeI	CATG	4 cut(s)	175, 249, 408, 527
FatI	CATG	4 cut(s)	171, 245, 404, 523
FauNDI	CATATG	1 cut(s)	127
Fnu4HI	GCNGC	4 cut(s)	58, 115, 281, 434
Fsp4HI	GCNGC	4 cut(s)	58, 115, 281, 434
FspBI	CTAG	1 cut(s)	651
GluI	GCNGC	4 cut(s)	58, 115, 281, 434
HaeIII	GGCC	3 cut(s)	65, 730, 844
Hin1II	CATG	4 cut(s)	175, 249, 408, 527
HinfI	GANTC	3 cut(s)	194, 359, 512
Hpy166II	GTNNAC	1 cut(s)	818
Hpy188I	TCNGA	2 cut(s)	46, 862
Hpy188III	TCNNGA	3 cut(s)	172, 561, 602
Hpy8I	GTNNAC	1 cut(s)	818
HpyAV	CCTTC	3 cut(s)	104, 214, 602
HpyCH4III	ACNGT	3 cut(s)	687, 795, 882
HpyCH4IV	ACGT	2 cut(s)	68, 741
HpyCH4V	TGCA	9 cut(s)	125, 201, 404, 408, 421, 523, 714, 738, 848
HpyF10VI	GCNNNNNNNGC	2 cut(s)	401, 647
HpyF3I	CTNAG	4 cut(s)	204, 550, 566, 834
HpySE526I	ACGT	2 cut(s)	68, 741
Hsp92II	CATG	4 cut(s)	175, 249, 408, 527
LpnPI	CCDG	4 cut(s)	249, 385, 407, 858
Lsp1109I	GCAGC	3 cut(s)	101, 292, 445
LweI	GCATC	1 cut(s)	853
MaeI	CTAG	1 cut(s)	651
MaeII	ACGT	2 cut(s)	68, 741
MaeIII	GTNAC	2 cut(s)	258, 829
MboII	GAAGA	5 cut(s)	46, 59, 347, 500, 644
MfeI	CAATTG	1 cut(s)	724
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	7 cut(s)	72, 87, 304, 457, 624, 704, 724
MluNI	TGGCCA	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	724
MnlI	CCTC	8 cut(s)	30, 232, 565, 568, 670, 829, 834, 877
Mox20I	TGGCCA	1 cut(s)	65
Mph1103I	ATGCAT	1 cut(s)	410
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	7 cut(s)	71, 86, 90, 213, 366, 546, 800
MslI	CAYNNNNRTG	2 cut(s)	528, 861
Msp20I	TGGCCA	1 cut(s)	65
MunI	CAATTG	1 cut(s)	724
Mva1269I	GAATGC	1 cut(s)	408
MwoI	GCNNNNNNNGC	2 cut(s)	401, 647
NdeI	CATATG	1 cut(s)	127
NlaIII	CATG	4 cut(s)	175, 249, 408, 527
NmuCI	GTSAC	1 cut(s)	829
NsiI	ATGCAT	1 cut(s)	410
NspI	RCATGY	1 cut(s)	408
NspV	TTCGAA	1 cut(s)	809
PacI	TTAATTAA	1 cut(s)	90
PaeI	GCATGC	1 cut(s)	408
PagI	TCATGA	1 cut(s)	171
PceI	AGGCCT	1 cut(s)	844
PctI	GAATGC	1 cut(s)	408
PfeI	GAWTC	3 cut(s)	194, 359, 512
PkrI	GCNGC	4 cut(s)	59, 116, 282, 435
Psp1406I	AACGTT	1 cut(s)	741
PspPI	GGNCC	1 cut(s)	729
RseI	CAYNNNNRTG	2 cut(s)	528, 861
SaqAI	TTAA	7 cut(s)	71, 86, 90, 213, 366, 546, 800
SatI	GCNGC	4 cut(s)	58, 115, 281, 434
Sau96I	GGNCC	1 cut(s)	729
SfaNI	GCATC	1 cut(s)	853
SfuI	TTCGAA	1 cut(s)	809
SmiMI	CAYNNNNRTG	2 cut(s)	528, 861
SmlI	CTYRAG	1 cut(s)	559
SmoI	CTYRAG	1 cut(s)	559
SphI	GCATGC	1 cut(s)	408
Sse9I	AATT	7 cut(s)	72, 87, 304, 457, 624, 704, 724
SseBI	AGGCCT	1 cut(s)	844
SsiI	CCGC	1 cut(s)	58
SspI	AATATT	1 cut(s)	142
SspMI	CTAG	1 cut(s)	651
StuI	AGGCCT	1 cut(s)	844
TaaI	ACNGT	3 cut(s)	687, 795, 882
TaiI	ACGT	2 cut(s)	71, 744
TaqI	TCGA	2 cut(s)	333, 809
TasI	AATT	7 cut(s)	72, 87, 304, 457, 624, 704, 724
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	3 cut(s)	194, 359, 512
Tru1I	TTAA	7 cut(s)	71, 86, 90, 213, 366, 546, 800
Tru9I	TTAA	7 cut(s)	71, 86, 90, 213, 366, 546, 800
TscAI	CASTG	3 cut(s)	21, 301, 454
TseFI	GTSAC	1 cut(s)	829
TseI	GCWGC	3 cut(s)	114, 280, 433
Tsp45I	GTSAC	1 cut(s)	829
TspDTI	ATGAA	5 cut(s)	234, 372, 525, 621, 788
TspRI	CASTG	3 cut(s)	21, 301, 454
XapI	RAATTY	1 cut(s)	624
XceI	RCATGY	1 cut(s)	408
XspI	CTAG	1 cut(s)	651
Zsp2I	ATGCAT	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.