Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002067

Physical Location & Seq

Genomic Coordinates Reverse (-)

22114113 .. 22126547

Gene Structure 12435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG103700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGATGAAGGTATCCAAGCAGAAATTTGTGAAGAAAAAGCTAAAACTGCTAGTGGAACTCACAGCTTCCAATATGAGGTTGAACAGTCAGTTGGGGTTAGGGACTTGCTTTGCACCTTTGACAATTGGCCCAACTGCAACGTTGGAAGTTCTAACAGAAAAGATGATGGTATGAAGCACTTTGGATTGGAACTGTCTTTAAGAAGTTCGAATGGTTCACACAAGGAAGTGATTGAGGAGAGGCCTGCACCGAAACATTCTGATGCCTCTACCTTTTCACGGAGGCAAGAGCTGTCGAGAAGAGAAAAGAAGAAGAATCATGCCATCATTTGGATAGAGAGAGAAGCTCAAAGGGCTCTAGATGACAATGAGTTGGTTCGGTTGAAGCGTGAAGCAAGGCTGAAAGGAGGATTCTATGTCAAGCCAGAGTCTAAGCTTTCGTTTATCATTCGTATCCATGGTATCAATGCCATTGATCCAAAGACAAAGAAGATCTTGCAACTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048511 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

169

Amino Acids

19.36

Weight (kDa)

8.97

Isoelectric Point (pI)

51.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46670 AT2G46790 AT2G46790 AT2G46790 AT2G46790 AT2G46790
fragaria_vesca	FvH4_7g17760 FvH4_7g17760 FvH4_7g17760 FvH4_7g17760 FvH4_7g17760
malus_domestica	MD01G1088900.v1.1
prunus_persica	Prupe.2G198500_v2.0.a1 Prupe.2G198500_v2.0.a1
pyrus_communis	pycom01g11320
rosa_chinensis	RchiOBHm_Chr1g0361151
rosa_laevigata	RLG00000027745
rosa_multiflora	Rmu_co8346237.1_g000001 Rmu_sc0000309.1_g000018 Rmu_sc0000427.1_g000034 Rmu_sc0001816.1_g000014 Rmu_sc0002872.1_g000001 Rmu_sc0006147.1_g000005 Rmu_sc0035862.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295360 Rroxscaffold_6G00419120
rosa_rugosa	Rorug01G0286500 Rorug01G0286500 Rorug01G0286500 Rorug01G0286500
rosa_samantha	Rh1AG206100 Rh1AG297800 Rh1BG261800 Rh1CG191000 Rh1CG279200 Rh1DG291700 Rh2BG478900 Rh2DG487700 Rh2DG555300 Rh3AG290400 Rh4AG103700 Rh4AG103800 Rh4CG112000
rosa_wichuraiana	Rw1G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	330
AclI	AACGTT	1 cut(s)	141
AclWI	GGATC	1 cut(s)	470
AcsI	RAATTY	1 cut(s)	24
AfiI	CCNNNNNNNGG	3 cut(s)	76, 279, 330
AgsI	TTSAA	2 cut(s)	83, 385
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	5 cut(s)	41, 66, 292, 347, 436
AluI	AGCT	5 cut(s)	41, 66, 292, 347, 436
AlwI	GGATC	1 cut(s)	470
AoxI	GGCC	2 cut(s)	128, 242
ApoI	RAATTY	1 cut(s)	24
AspS9I	GGNCC	1 cut(s)	129
AsuII	TTCGAA	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	358
BccI	CCATC	2 cut(s)	161, 332
BciVI	GTATCC	2 cut(s)	23, 464
BfaI	CTAG	2 cut(s)	51, 359
BfuI	GTATCC	2 cut(s)	23, 464
BglII	AGATCT	1 cut(s)	492
BmgT120I	GGNCC	1 cut(s)	129
BmsI	GCATC	1 cut(s)	253
BplI	GAGNNNNNCTC	2 cut(s)	331, 363
Bpu14I	TTCGAA	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	457
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 279, 330
BseDI	CCNNGG	1 cut(s)	457
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	3 cut(s)	76, 279, 330
BseRI	GAGGAG	1 cut(s)	251
BsgI	GTGCAG	1 cut(s)	231
BshFI	GGCC	2 cut(s)	130, 244
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	3 cut(s)	76, 279, 330
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	2 cut(s)	130, 244
Bsp119I	TTCGAA	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	2 cut(s)	475, 492
Bsp19I	CCATGG	1 cut(s)	457
BspANI	GGCC	2 cut(s)	130, 244
BspPI	GGATC	1 cut(s)	470
BspT104I	TTCGAA	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	457
BssMI	GATC	2 cut(s)	475, 492
BssT1I	CCWWGG	1 cut(s)	457
Bst4CI	ACNGT	2 cut(s)	87, 195
Bst6I	CTCTTC	1 cut(s)	295
BstBI	TTCGAA	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	1 cut(s)	432
BstDSI	CCRYGG	1 cut(s)	457
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	478, 495
BstMBI	GATC	2 cut(s)	475, 492
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 353
BstX2I	RGATCY	1 cut(s)	492
BstYI	RGATCY	1 cut(s)	492
BsuI	GTATCC	2 cut(s)	23, 464
BsuRI	GGCC	2 cut(s)	130, 244
BtgI	CCRYGG	1 cut(s)	457
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	129
CviAII	CATG	2 cut(s)	320, 458
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	2 cut(s)	477, 494
DpnII	GATC	2 cut(s)	475, 492
Eam1104I	CTCTTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	457
Eco147I	AGGCCT	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	457
EcoT38I	GRGCYC	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	457
FaeI	CATG	2 cut(s)	323, 461
FaiI	YATR	5 cut(s)	75, 173, 321, 417, 459
FalI	AAGNNNNNCTT	1 cut(s)	479
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	2 cut(s)	319, 457
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	358
FspBI	CTAG	2 cut(s)	51, 359
HaeIII	GGCC	2 cut(s)	130, 244
Hin1II	CATG	2 cut(s)	323, 461
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	3 cut(s)	316, 411, 428
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	2 cut(s)	297, 359
Hpy8I	GTNNAC	1 cut(s)	218
HpyCH4III	ACNGT	2 cut(s)	87, 195
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	4 cut(s)	114, 138, 248, 499
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 353
HpyF3I	CTNAG	1 cut(s)	432
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	323, 461
Kzo9I	GATC	2 cut(s)	475, 492
LpnPI	CCDG	2 cut(s)	258, 438
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	2 cut(s)	51, 359
MaeII	ACGT	1 cut(s)	141
MalI	GATC	2 cut(s)	477, 494
MboI	GATC	2 cut(s)	475, 492
MboII	GAAGA	5 cut(s)	44, 312, 322, 325, 502
MfeI	CAATTG	1 cut(s)	124
MflI	RGATCY	1 cut(s)	492
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	2 cut(s)	24, 124
MlyI	GAGTC	1 cut(s)	437
MmeI	TCCRAC	1 cut(s)	124
MnlI	CCTC	6 cut(s)	70, 229, 234, 276, 277, 401
MseI	TTAA	1 cut(s)	200
MslI	CAYNNNNRTG	1 cut(s)	261
MunI	CAATTG	1 cut(s)	124
MwoI	GCNNNNNNNGC	2 cut(s)	47, 353
NcoI	CCATGG	1 cut(s)	457
NdeII	GATC	2 cut(s)	475, 492
NlaIII	CATG	2 cut(s)	323, 461
NspV	TTCGAA	1 cut(s)	209
PceI	AGGCCT	1 cut(s)	244
PcsI	WCGNNNNNNNCGW	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	316, 411
PflMI	CCANNNNNTGG	1 cut(s)	330
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
Psp1406I	AACGTT	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	129
PsuI	RGATCY	1 cut(s)	492
RseI	CAYNNNNRTG	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	200
Sau3AI	GATC	2 cut(s)	475, 492
Sau96I	GGNCC	1 cut(s)	129
SchI	GAGTC	1 cut(s)	437
SduI	GDGCHC	1 cut(s)	358
SfaNI	GCATC	1 cut(s)	253
SfuI	TTCGAA	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	261
Sse9I	AATT	2 cut(s)	24, 124
SseBI	AGGCCT	1 cut(s)	244
SspMI	CTAG	2 cut(s)	51, 359
StuI	AGGCCT	1 cut(s)	244
StyI	CCWWGG	1 cut(s)	457
TaaI	ACNGT	2 cut(s)	87, 195
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	2 cut(s)	209, 296
TasI	AATT	2 cut(s)	24, 124
TfiI	GAWTC	2 cut(s)	316, 411
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TspDTI	ATGAA	2 cut(s)	21, 188
TspGWI	ACGGA	1 cut(s)	295
Van91I	CCANNNNNTGG	1 cut(s)	330
XapI	RAATTY	1 cut(s)	24
XbaI	TCTAGA	1 cut(s)	358
XspI	CTAG	2 cut(s)	51, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.