RLG00000027745

Two-component response regulator-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
14696653 .. 14699995
3343 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027745

Sequence Viewer

Length: 1383 bp
ATGGTGGGTGAAATGGAGGCGGTAAAAATTGAGAGGAAGGAGGAGGAAGAAGAGGGTGGTGGTAGCTCTACAGAGGTGGTGAGTTGGGGGAACTATCTTCCCACCACTGTGCTTAGGGTTCTATTGGTTGAAGCTGATGACTCTACTCGTCAGATTATCACTGCTCTTCTTCGAAAATGCAATTATAGAGTTGTTTCGGTTTCTGATGGATTGAGGGCGTGGGAGACGATAAAGGTGAAGCATAATAAGATAGACCTTATTCTGACTGAGGCAGAGTTGCCATCAATATCTGGATTTGCGCTTCTTACTTTGGTGATGGAGCATGATATTTGCAAGCACATACCTGTTATAATGATGTCGTCTCAAGACTCTGTGAATATGGTTTTGAAGTGCATGCAAAAAGGGGCCGCCGACTATCTGATTAAGCCGGTCAGGAGGAATGAGCTGAGGAACCTTTGGCAACATGTGTGGAGAAGGCACACTCTAGCTAGTGGACAAGCTCCTCAGAACTTAACAGTTTCACAACAAAAAGTTGAAGCCACTTCGGAAAATAATGCAGCAAGTAATCATTCAAATGACTATGCAAATGCAAACTGGTACAAGGGACTGCAACCCCTTTTCCCGACATATCCCAGTACAAAATTGGAGGATGCAAGCAATTCACATGATAGACAGGACAATATGGTAAACTTTGTTGATGATCAAACTGAGCAAGCTGATTCATCCATCCAAGGGCCCCAACTTGGGGTGTTTCCTGTCACTAGTGTAAGGTCTGATAATATGTGTGCTGGATACAGTCATTATTTCCCATCCTTGTTTCTTGGACAATCCGATTTGACCCCTAAGTTCAGTATCAAATCAGTTGGCCAGAGCACACAATCCACCTCTCACTCAGAACAAGGTTATGACGAGTCTGATAAAACTACCGATAAATCTATTGACCAAACCCTGCATGAGCAGAACAAACTGGAGAATGTGGAGCATTTGAAACCTGGTTCTCCTGCGGCTTCTCAGAGTGGTTGTAGTAGTTTAGGCAATGGTACTGTTGATAATCATATTAGTGGCAGCGCATATGGAAGCATTTGCAGTAGCAATGATGGAAAGGCCAGTTTGGCTGTAGCAGGTGAGATGGCTACAGCTTCTGAGAGTTTGAATGACAGTGGTCGCTATGTTCGTGAGGGATCTGGAGTGGATTCTCTTCGTTCCAGCCAAAGGGAAGCAGCTCTGACTAAGTTCCGACTGAAGCGGAAAGATAGATGCTTTGAGAAGAAGGTTAGATACCAAAGCCGGAAAATACTGGCAGAGAAGCGGCCAAGAGTGAAAGGTCAATTCGTGCATAGAGCTCATACTGATCCTCCAACTGCCAATGCTGTTGGTTCATGA

Protein Analysis

461

Amino Acids

50.78

Weight (kDa)

6.55

Isoelectric Point (pI)

48.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 40 - 151 5.7e-22 Response regulator receiver domain
CCT PF06203 405 - 446 4.9e-17 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 350
AarI CACCTGC 1 cut(s) 1112
Acc36I ACCTGC 1 cut(s) 1112
AciI CCGC 5 cut(s) 20, 408, 1004, 1246, 1309
AclWI GGATC 2 cut(s) 1189, 1346
AcoI YGGCCR 2 cut(s) 865, 1310
AcuI CTGAAG 1 cut(s) 1262
AfaI GTAC 3 cut(s) 599, 637, 1042
AfiI CCNNNNNNNGG 5 cut(s) 732, 743, 744, 745, 1212
AflIII ACRYGT 1 cut(s) 463
AgsI TTSAA 6 cut(s) 131, 388, 536, 573, 988, 1153
AhlI ACTAGT 1 cut(s) 761
AjnI CCWGG 1 cut(s) 991
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 9 cut(s) 66, 134, 445, 488, 500, 716, 1139, 1223, 1343
AluI AGCT 9 cut(s) 66, 134, 445, 488, 500, 716, 1139, 1223, 1343
Alw21I GWGCWC 2 cut(s) 875, 1345
Alw26I GTCTC 2 cut(s) 218, 366
AlwI GGATC 2 cut(s) 1189, 1346
AlwNI CAGNNNCTG 1 cut(s) 1142
AoxI GGCC 5 cut(s) 405, 734, 865, 1104, 1310
ApaI GGGCCC 1 cut(s) 738
ApeKI GCWGC 3 cut(s) 557, 1065, 1220
AspLEI GCGC 2 cut(s) 301, 1070
AspS9I GGNCC 3 cut(s) 405, 734, 735
AsuHPI GGTGA 5 cut(s) 20, 91, 247, 325, 1136
AsuII TTCGAA 1 cut(s) 172
BaeGI GKGCMC 1 cut(s) 738
BalI TGGCCA 1 cut(s) 867
BanII GRGCYC 2 cut(s) 738, 1345
BarI GAAGNNNNNNTAC 2 cut(s) 1262, 1294
Bbv12I GWGCWC 2 cut(s) 875, 1345
BbvCI CCTCAGC 1 cut(s) 446
BbvI GCAGC 3 cut(s) 569, 1077, 1232
BccI CCATC 7 cut(s) 200, 289, 310, 734, 817, 1091, 1123
BciT130I CCWGG 1 cut(s) 993
BciVI GTATCC 1 cut(s) 785
BclI TGATCA 1 cut(s) 700
BcoDI GTCTC 2 cut(s) 218, 366
BcuI ACTAGT 1 cut(s) 761
BfaI CTAG 3 cut(s) 485, 489, 762
BfmI CTRYAG 3 cut(s) 69, 1116, 1134
BfuAI ACCTGC 1 cut(s) 1112
BfuI GTATCC 1 cut(s) 785
BglI GCCNNNNNGGC 1 cut(s) 1112
BisI GCNGC 6 cut(s) 408, 558, 1005, 1066, 1221, 1310
BlsI GCNGC 6 cut(s) 409, 559, 1006, 1067, 1222, 1311
Bme1390I CCNGG 1 cut(s) 993
BmgT120I GGNCC 3 cut(s) 405, 734, 735
BmiI GGNNCC 4 cut(s) 406, 452, 736, 737
BmrFI CCNGG 1 cut(s) 993
BmrI ACTGGG 1 cut(s) 627
BmsI GCATC 2 cut(s) 640, 1247
BmuI ACTGGG 1 cut(s) 627
BoxI GACNNNNGTC 1 cut(s) 1161
BpmI CTGGAG 2 cut(s) 989, 1206
Bpu10I CCTNAGC 2 cut(s) 113, 446
Bpu14I TTCGAA 1 cut(s) 172
BpuEI CTTGAG 1 cut(s) 348
BsaJI CCNNGG 1 cut(s) 730
BsaXI ACNNNNNCTCC 2 cut(s) 1339, 1369
Bsc4I CCNNNNNNNGG 5 cut(s) 732, 743, 744, 745, 1212
Bse118I RCCGGY 1 cut(s) 427
Bse1I ACTGG 5 cut(s) 599, 633, 972, 1107, 1302
Bse3DI GCAATG 2 cut(s) 1042, 1099
BseBI CCWGG 1 cut(s) 993
BseDI CCNNGG 1 cut(s) 730
BseGI GGATG 4 cut(s) 655, 722, 726, 809
BseLI CCNNNNNNNGG 5 cut(s) 732, 743, 744, 745, 1212
BseMI GCAATG 2 cut(s) 1042, 1099
BseMII CTCAG 7 cut(s) 258, 437, 518, 699, 906, 1025, 1134
BseNI ACTGG 5 cut(s) 599, 633, 972, 1107, 1302
BseRI GAGGAG 2 cut(s) 56, 492
BseSI GKGCMC 1 cut(s) 738
BseXI GCAGC 3 cut(s) 569, 1077, 1232
BshFI GGCC 5 cut(s) 407, 736, 867, 1106, 1312
BsiHKAI GWGCWC 2 cut(s) 875, 1345
BsiSI CCGG 2 cut(s) 428, 1288
BslFI GGGAC 1 cut(s) 618
BslI CCNNNNNNNGG 5 cut(s) 732, 743, 744, 745, 1212
BsmAI GTCTC 2 cut(s) 218, 366
BsmBI CGTCTC 2 cut(s) 218, 366
BsmFI GGGAC 1 cut(s) 618
BsnI GGCC 5 cut(s) 407, 736, 867, 1106, 1312
Bsp119I TTCGAA 1 cut(s) 172
Bsp120I GGGCCC 1 cut(s) 734
Bsp1286I GDGCHC 3 cut(s) 738, 875, 1345
Bsp143I GATC 3 cut(s) 700, 1181, 1351
BspACI CCGC 5 cut(s) 20, 408, 1004, 1246, 1309
BspANI GGCC 5 cut(s) 407, 736, 867, 1106, 1312
BspCNI CTCAG 7 cut(s) 259, 438, 517, 700, 905, 1024, 1135
BspHI TCATGA 1 cut(s) 1379
BspLI GGNNCC 4 cut(s) 406, 452, 736, 737
BspMI ACCTGC 1 cut(s) 1112
BspPI GGATC 2 cut(s) 1189, 1346
BspQI GCTCTTC 1 cut(s) 171
BspT104I TTCGAA 1 cut(s) 172
BsrDI GCAATG 2 cut(s) 1042, 1099
BsrFI RCCGGY 1 cut(s) 427
BsrI ACTGG 5 cut(s) 599, 633, 972, 1107, 1302
BssAI RCCGGY 1 cut(s) 427
BssECI CCNNGG 1 cut(s) 730
BssMI GATC 3 cut(s) 700, 1181, 1351
BssT1I CCWWGG 1 cut(s) 730
Bst2UI CCWGG 1 cut(s) 993
Bst4CI ACNGT 5 cut(s) 109, 517, 797, 1045, 1160
Bst6I CTCTTC 3 cut(s) 45, 171, 1203
BstBI TTCGAA 1 cut(s) 172
BstC8I GCNNGC 4 cut(s) 335, 395, 655, 714
BstF5I GGATG 4 cut(s) 655, 722, 726, 809
BstHHI GCGC 2 cut(s) 301, 1070
BstKTI GATC 3 cut(s) 703, 1184, 1354
BstMAI GTCTC 2 cut(s) 218, 366
BstMBI GATC 3 cut(s) 700, 1181, 1351
BstMWI GCNNNNNNNGC 1 cut(s) 1112
BstNI CCWGG 1 cut(s) 993
BstNSI RCATGY 2 cut(s) 397, 467
BstPAI GACNNNNGTC 1 cut(s) 1161
BstSCI CCNGG 1 cut(s) 991
BstSFI CTRYAG 3 cut(s) 69, 1116, 1134
BstSLI GKGCMC 1 cut(s) 738
BstV1I GCAGC 3 cut(s) 569, 1077, 1232
BstX2I RGATCY 1 cut(s) 1181
BstYI RGATCY 1 cut(s) 1181
BsuI GTATCC 1 cut(s) 785
BsuRI GGCC 5 cut(s) 407, 736, 867, 1106, 1312
BtsCI GGATG 4 cut(s) 655, 722, 726, 809
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 3 cut(s) 105, 159, 1165
BveI ACCTGC 1 cut(s) 1112
Cac8I GCNNGC 4 cut(s) 335, 395, 655, 714
CaiI CAGNNNCTG 1 cut(s) 1142
CciI TCATGA 1 cut(s) 1379
CfoI GCGC 2 cut(s) 301, 1070
Cfr10I RCCGGY 1 cut(s) 427
Cfr13I GGNCC 3 cut(s) 405, 734, 735
CsiI ACCWGGT 1 cut(s) 991
Csp6I GTAC 3 cut(s) 598, 636, 1041
CspCI CAANNNNNGTGG 2 cut(s) 449, 484
CviAII CATG 6 cut(s) 323, 394, 464, 665, 953, 1380
CviQI GTAC 3 cut(s) 598, 636, 1041
DpnI GATC 3 cut(s) 702, 1183, 1353
DpnII GATC 3 cut(s) 700, 1181, 1351
EaeI YGGCCR 2 cut(s) 865, 1310
Eam1104I CTCTTC 3 cut(s) 45, 171, 1203
EarI CTCTTC 3 cut(s) 45, 171, 1203
Ecl136II GAGCTC 1 cut(s) 1343
Eco130I CCWWGG 1 cut(s) 730
Eco24I GRGCYC 2 cut(s) 738, 1345
Eco53kI GAGCTC 1 cut(s) 1343
Eco57I CTGAAG 1 cut(s) 1262
EcoICRI GAGCTC 1 cut(s) 1343
EcoO109I RGGNCCY 2 cut(s) 734, 735
EcoRII CCWGG 1 cut(s) 991
EcoT14I CCWWGG 1 cut(s) 730
EcoT38I GRGCYC 2 cut(s) 738, 1345
ErhI CCWWGG 1 cut(s) 730
Esp3I CGTCTC 2 cut(s) 218, 366
FaeI CATG 6 cut(s) 326, 397, 467, 668, 956, 1383
FaqI GGGAC 1 cut(s) 618
FatI CATG 6 cut(s) 322, 393, 463, 664, 952, 1379
FauNDI CATATG 1 cut(s) 1072
FbaI TGATCA 1 cut(s) 700
Fnu4HI GCNGC 6 cut(s) 408, 558, 1005, 1066, 1221, 1310
FokI GGATG 4 cut(s) 662, 709, 713, 796
FriOI GRGCYC 2 cut(s) 738, 1345
Fsp4HI GCNGC 6 cut(s) 408, 558, 1005, 1066, 1221, 1310
FspBI CTAG 3 cut(s) 485, 489, 762
GlaI GCGC 2 cut(s) 300, 1069
GluI GCNGC 6 cut(s) 408, 558, 1005, 1066, 1221, 1310
GsuI CTGGAG 2 cut(s) 989, 1206
HaeIII GGCC 5 cut(s) 407, 736, 867, 1106, 1312
HapII CCGG 2 cut(s) 428, 1288
HhaI GCGC 2 cut(s) 301, 1070
Hin1II CATG 6 cut(s) 326, 397, 467, 668, 956, 1383
Hin6I GCGC 2 cut(s) 299, 1068
HinP1I GCGC 2 cut(s) 299, 1068
HinfI GANTC 5 cut(s) 140, 368, 719, 911, 1193
HpaII CCGG 2 cut(s) 428, 1288
HphI GGTGA 5 cut(s) 20, 91, 247, 325, 1136
Hpy166II GTNNAC 2 cut(s) 494, 688
Hpy188III TCNNGA 7 cut(s) 291, 365, 433, 622, 1175, 1185, 1380
Hpy8I GTNNAC 2 cut(s) 494, 688
HpyAV CCTTC 3 cut(s) 31, 468, 1264
HpyCH4III ACNGT 5 cut(s) 109, 517, 797, 1045, 1160
HpyF10VI GCNNNNNNNGC 1 cut(s) 1112
Hsp92II CATG 6 cut(s) 326, 397, 467, 668, 956, 1383
HspAI GCGC 2 cut(s) 299, 1068
Ksp22I TGATCA 1 cut(s) 700
Kzo9I GATC 3 cut(s) 700, 1181, 1351
LguI GCTCTTC 1 cut(s) 171
LmnI GCTCC 3 cut(s) 319, 505, 979
Lsp1109I GCAGC 3 cut(s) 569, 1077, 1232
LweI GCATC 2 cut(s) 640, 1247
MabI ACCWGGT 1 cut(s) 991
MaeI CTAG 3 cut(s) 485, 489, 762
MaeIII GTNAC 1 cut(s) 757
MalI GATC 3 cut(s) 702, 1183, 1353
MboI GATC 3 cut(s) 700, 1181, 1351
MboII GAAGA 7 cut(s) 59, 62, 89, 158, 161, 1190, 1279
MflI RGATCY 1 cut(s) 1181
MhlI GDGCHC 3 cut(s) 738, 875, 1345
MlsI TGGCCA 1 cut(s) 867
MluCI AATT 5 cut(s) 27, 181, 641, 658, 1328
MluNI TGGCCA 1 cut(s) 867
MlyI GAGTC 3 cut(s) 134, 362, 920
MmeI TCCRAC 2 cut(s) 1261, 1382
Mox20I TGGCCA 1 cut(s) 867
MscI TGGCCA 1 cut(s) 867
MseI TTAA 2 cut(s) 423, 512
MslI CAYNNNNRTG 3 cut(s) 107, 573, 1059
Msp20I TGGCCA 1 cut(s) 867
MspI CCGG 2 cut(s) 428, 1288
MspR9I CCNGG 1 cut(s) 993
MvaI CCWGG 1 cut(s) 993
MwoI GCNNNNNNNGC 1 cut(s) 1112
NdeI CATATG 1 cut(s) 1072
NdeII GATC 3 cut(s) 700, 1181, 1351
NlaIII CATG 6 cut(s) 326, 397, 467, 668, 956, 1383
NlaIV GGNNCC 4 cut(s) 406, 452, 736, 737
NmuCI GTSAC 1 cut(s) 757
NspI RCATGY 2 cut(s) 397, 467
NspV TTCGAA 1 cut(s) 172
OliI CACNNNNGTG 1 cut(s) 107
PaeI GCATGC 1 cut(s) 397
PagI TCATGA 1 cut(s) 1379
PaqCI CACCTGC 1 cut(s) 1112
PciI ACATGT 1 cut(s) 463
PciSI GCTCTTC 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 1171
PfeI GAWTC 2 cut(s) 719, 1193
PkrI GCNGC 6 cut(s) 409, 559, 1006, 1067, 1222, 1311
PleI GAGTC 3 cut(s) 134, 362, 919
PpsI GAGTC 3 cut(s) 134, 362, 919
PscI ACATGT 1 cut(s) 463
PshAI GACNNNNGTC 1 cut(s) 1161
PsiI TTATAA 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 1345
Psp6I CCWGG 1 cut(s) 991
PspGI CCWGG 1 cut(s) 991
PspN4I GGNNCC 4 cut(s) 406, 452, 736, 737
PspOMI GGGCCC 1 cut(s) 734
PspPI GGNCC 3 cut(s) 405, 734, 735
PstNI CAGNNNCTG 1 cut(s) 1142
PsuI RGATCY 1 cut(s) 1181
RsaI GTAC 3 cut(s) 599, 637, 1042
RsaNI GTAC 3 cut(s) 598, 636, 1041
RseI CAYNNNNRTG 3 cut(s) 107, 573, 1059
SacI GAGCTC 1 cut(s) 1345
SapI GCTCTTC 1 cut(s) 171
SaqAI TTAA 2 cut(s) 423, 512
SatI GCNGC 6 cut(s) 408, 558, 1005, 1066, 1221, 1310
Sau3AI GATC 3 cut(s) 700, 1181, 1351
Sau96I GGNCC 3 cut(s) 405, 734, 735
SchI GAGTC 3 cut(s) 134, 362, 920
ScrFI CCNGG 1 cut(s) 993
SduI GDGCHC 3 cut(s) 738, 875, 1345
SexAI ACCWGGT 1 cut(s) 991
SfaNI GCATC 2 cut(s) 640, 1247
SfcI CTRYAG 3 cut(s) 69, 1116, 1134
SfuI TTCGAA 1 cut(s) 172
SmiMI CAYNNNNRTG 3 cut(s) 107, 573, 1059
SmlI CTYRAG 1 cut(s) 363
SmoI CTYRAG 1 cut(s) 363
SpeI ACTAGT 1 cut(s) 761
SphI GCATGC 1 cut(s) 397
Sse9I AATT 5 cut(s) 27, 181, 641, 658, 1328
SsiI CCGC 5 cut(s) 20, 408, 1004, 1246, 1309
SspMI CTAG 3 cut(s) 485, 489, 762
SstI GAGCTC 1 cut(s) 1345
StyD4I CCNGG 1 cut(s) 991
StyI CCWWGG 1 cut(s) 730
TaaI ACNGT 5 cut(s) 109, 517, 797, 1045, 1160
TaqI TCGA 1 cut(s) 172
TasI AATT 5 cut(s) 27, 181, 641, 658, 1328
TatI WGTACW 1 cut(s) 635
TauI GCSGC 3 cut(s) 410, 1007, 1312
TfiI GAWTC 2 cut(s) 719, 1193
Tru1I TTAA 2 cut(s) 423, 512
Tru9I TTAA 2 cut(s) 423, 512
TscAI CASTG 3 cut(s) 112, 166, 1165
TseFI GTSAC 1 cut(s) 757
TseI GCWGC 3 cut(s) 557, 1065, 1220
Tsp45I GTSAC 1 cut(s) 757
TspDTI ATGAA 2 cut(s) 711, 1368
TspRI CASTG 3 cut(s) 112, 166, 1165
XceI RCATGY 2 cut(s) 397, 467
XcmI CCANNNNNNNNNTGG 1 cut(s) 640
XspI CTAG 3 cut(s) 485, 489, 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.