AT2G46900

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007094
Physical Location & Seq
Forward (+)
19269558 .. 19272263
2706 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G46900.1

Sequence Viewer

Length: 1884 bp
ATGTCTGGGAGGTTGCTGAAGAAGGTTCTCCAGGAACATGAAGATTCGAAACTTCAGAAACATCACGAAGAAGAAGAAGAAGAGGACGAAGAAGAATCAGGAGCCCGTTCTTCGATTAATCCATTCGATCTCTTGAACGATGGTGATGAAGATCCTGAGGAGATTGATGATGAGACTATAGCTGAGAAGAAGAACGAAGATGCGGATCATCAGTCAAGTGTCGCTGATCATGTGCAGCCGGTGTCAAAGAATAAGTCGAAGAAAAAGAAAAAGAAGAAGAACAAAGAGAGTGGCTCTAATGTGCCTAAAGCTGAAATGACTTTGGATGAAACTTTGGAAGCACTTGGTCTCAATGCTAACTCTAAGCAAGATAAGGTTCAGGAGACAAAACCAAATGCTGATTCTTCCAAAAAGGCTTCTTCACGATTTGTGTTGGAAATAGATTCCAAGTATCTGAATCTTGAGAACGAGTTGAGGAGAACGTATGGTTCAAAGGCTATGCGATCATTTGAGAGTGAGAGTGGCTCTCAAGGTGGTAGTAGCTCTAGACGAGGGGGAAGGCGTGGAGTCCATCATATCACAAAGACGGTTCTGGTATCTCCAAAAGAGAATTGGTCTCGATGGGATAGATCTTTCTCAATGGAGTTTCTAGAGACTAAAGATGGTAACAACTACTTCAGATATACCCATTCATCCTCATATGAGCAGGCTCAGAGAGCATTTCAGGCTGCACAAGCTATCCATGATTTGAATGGTGTAGCAAGTGTCCTTATACACAATCCTTACCATATTGAGTCGCTCATAACTATGGCGGATTACTTTAAGTTTGTAGGTGAGAATGATATGGCTGCAGATTCCATTGGAAAATGCTTGTACGGTTTGGAGCGTGCGTGGCATCCTATGTTCACTCCGTTCCAGGGTAACTGCCGGTTGGAGTTTAACCACGATGAAAACAAGCTGTTCTTCAAGACGCTTTTCACTCACATGAGAAACATGGACAGGCGTGGCTGTCATAGGTCAGCGTTGGAGGTCTGCAAACTCTTGCTTTCCTTGGACACGAGTAATCCTGTGGGCGCTTTGTTTTGTGTGGACTACTTTGCTTTGAGAGCAGAGGAGTATGCGTGGCTGGAGCAATTCTCGGAGGAGTACCGAAATGATAACTCATTATGGCTCTTTCCGAATTTCTCTTATTCGCTTGCAATAGCACGAGTTTATCTTGAAAAGATGGAGCCTACCTCTTCCTCAGAAGCCACTCCCAGAGATACTTCGAAGCAAAGCTCTTTGGATCTCATGACGCAAGCTTTGAAGCTTCATCCAACAGTACTCAACAAACTAGTGGAAAAAGTACCTTTAAAAGATCAGGCATGGACAAAGATACTCAAGCATTCTTACTTCCGATCAGATGAATCAAAGATCCCGTCTTTAGATCACCTCATCAAAATATATGTTGAGAGGAATTATCTTATATGGAGGCTTCCAGATGTACAGAAATTGCTTCGGAGCGCTGCTGATTTAGTCATTGAATCTCTGGAACAAGATGGAACCGAAGCTGAGAGCTGGCTTTGTGTAAGATTAGAAGCTTTCTCTTCTGAGAATAACCAGTACTCTCATTTATCAACCCATGATTTCTCTGATTCGATGCCAACTCTCCCACCAGACAATTTGCAGAACTTTGTGGCTGATCCAAGAATGGTGGGAGGAGAGCAAATGGCTGAAGGTGGCGGGAGAGGTCAACACCAAGCACCACCACCACGTCCACGTGATTTGGCAAATCGGAGTCCATTAGCTGTGTTGATTGAGTCAATACTTCCATGGGCTAATTTTGGAGATGGAGAGGATGAGATTGCACATGATGCTCACCACCAACCAGACAACAATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tcf25

Protein Analysis

627

Amino Acids

71.42

Weight (kDa)

5.47

Isoelectric Point (pI)

53.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tcf25 PF04910 226 - 553 2e-69 Transcriptional repressor TCF25
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 203, 812, 1722
AclWI GGATC 5 cut(s) 146, 213, 1293, 1408, 1676
AcsI RAATTY 1 cut(s) 1180
AcuI CTGAAG 4 cut(s) 38, 38, 661, 1734
AcvI CACGTG 1 cut(s) 1760
AfaI GTAC 6 cut(s) 875, 1148, 1323, 1347, 1485, 1604
AfeI AGCGCT 1 cut(s) 1504
AfiI CCNNNNNNNGG 1 cut(s) 917
AgsI TTSAA 7 cut(s) 136, 492, 751, 967, 1220, 1306, 1523
AhlI ACTAGT 1 cut(s) 1333
AjiI CACGTC 1 cut(s) 1754
AjnI CCWGG 2 cut(s) 30, 915
AjuI GAANNNNNNNTTGG 2 cut(s) 385, 417
Alw26I GTCTC 5 cut(s) 167, 353, 377, 621, 647
AlwI GGATC 5 cut(s) 146, 213, 1293, 1408, 1676
Aor51HI AGCGCT 1 cut(s) 1504
ApeKI GCWGC 4 cut(s) 235, 728, 848, 1505
ApoI RAATTY 1 cut(s) 1180
ArsI GACNNNNNNTTYG 6 cut(s) 239, 271, 1285, 1317, 1403, 1435
AseI ATTAAT 1 cut(s) 117
AspLEI GCGC 2 cut(s) 1076, 1505
AsuHPI GGTGA 4 cut(s) 155, 845, 1421, 1850
AsuII TTCGAA 2 cut(s) 47, 1268
AxyI CCTNAGG 1 cut(s) 156
BanII GRGCYC 1 cut(s) 106
BauI CACGAG 2 cut(s) 1057, 1206
BbrPI CACGTG 1 cut(s) 1760
BbvI GCAGC 4 cut(s) 247, 715, 835, 1492
BccI CCATC 7 cut(s) 134, 579, 615, 656, 1219, 1532, 1823
BciT130I CCWGG 2 cut(s) 32, 917
BclI TGATCA 1 cut(s) 226
BcoDI GTCTC 5 cut(s) 167, 353, 377, 621, 647
BcuI ACTAGT 1 cut(s) 1333
BfaI CTAG 3 cut(s) 546, 650, 1334
BfmI CTRYAG 2 cut(s) 177, 849
BfoI RGCGCY 2 cut(s) 1077, 1506
BglII AGATCT 1 cut(s) 629
BisI GCNGC 4 cut(s) 236, 729, 849, 1506
BlsI GCNGC 4 cut(s) 237, 730, 850, 1507
BmcAI AGTACT 2 cut(s) 1323, 1604
Bme1390I CCNGG 2 cut(s) 32, 917
BmgBI CACGTC 1 cut(s) 1754
BmiI GGNNCC 3 cut(s) 103, 1230, 1543
BmrFI CCNGG 2 cut(s) 32, 917
BmsI GCATC 4 cut(s) 190, 904, 1629, 1843
BpmI CTGGAG 2 cut(s) 14, 1148
Bpu14I TTCGAA 2 cut(s) 47, 1268
BpuEI CTTGAG 3 cut(s) 482, 513, 1364
BsaAI YACGTR 1 cut(s) 1760
BsaBI GATNNNNATC 2 cut(s) 150, 204
BsaI GGTCTC 2 cut(s) 353, 621
BsaJI CCNNGG 3 cut(s) 916, 1050, 1811
BsaXI ACNNNNNCTCC 4 cut(s) 875, 905, 1106, 1136
Bsc4I CCNNNNNNNGG 1 cut(s) 917
Bse118I RCCGGY 2 cut(s) 238, 927
Bse1I ACTGG 1 cut(s) 1600
Bse21I CCTNAGG 1 cut(s) 156
Bse8I GATNNNNATC 2 cut(s) 150, 204
BseBI CCWGG 2 cut(s) 32, 917
BseDI CCNNGG 3 cut(s) 916, 1050, 1811
BseGI GGATG 5 cut(s) 331, 692, 895, 1312, 1843
BseJI GATNNNNATC 2 cut(s) 150, 204
BseLI CCNNNNNNNGG 1 cut(s) 917
BseMII CTCAG 6 cut(s) 147, 174, 725, 1257, 1542, 1581
BseNI ACTGG 1 cut(s) 1600
BseRI GAGGAG 5 cut(s) 173, 490, 1127, 1157, 1713
BseXI GCAGC 4 cut(s) 247, 715, 835, 1492
BsgI GTGCAG 2 cut(s) 254, 714
BsiSI CCGG 2 cut(s) 239, 928
BslI CCNNNNNNNGG 1 cut(s) 917
BsmAI GTCTC 5 cut(s) 167, 353, 377, 621, 647
BsmI GAATGC 1 cut(s) 1384
Bso31I GGTCTC 2 cut(s) 353, 621
Bsp119I TTCGAA 2 cut(s) 47, 1268
Bsp1286I GDGCHC 1 cut(s) 106
Bsp1407I TGTACA 1 cut(s) 1483
Bsp19I CCATGG 1 cut(s) 1811
BspACI CCGC 3 cut(s) 203, 812, 1722
BspCNI CTCAG 6 cut(s) 148, 175, 724, 1256, 1543, 1582
BspHI TCATGA 1 cut(s) 1290
BspLI GGNNCC 3 cut(s) 103, 1230, 1543
BspMAI CTGCAG 1 cut(s) 853
BspPI GGATC 5 cut(s) 146, 213, 1293, 1408, 1676
BspT104I TTCGAA 2 cut(s) 47, 1268
BspTNI GGTCTC 2 cut(s) 353, 621
BsrFI RCCGGY 2 cut(s) 238, 927
BsrGI TGTACA 1 cut(s) 1483
BsrI ACTGG 1 cut(s) 1600
BssAI RCCGGY 2 cut(s) 238, 927
BssECI CCNNGG 3 cut(s) 916, 1050, 1811
BssSI CACGAG 2 cut(s) 1057, 1206
BssT1I CCWWGG 2 cut(s) 1050, 1811
Bst2BI CACGAG 2 cut(s) 1057, 1206
Bst2UI CCWGG 2 cut(s) 32, 917
Bst4CI ACNGT 3 cut(s) 589, 878, 1321
Bst6I CTCTTC 3 cut(s) 75, 1243, 1591
BstAPI GCANNNNNTGC 1 cut(s) 1853
BstAUI TGTACA 1 cut(s) 1483
BstBAI YACGTR 1 cut(s) 1760
BstBI TTCGAA 2 cut(s) 47, 1268
BstC8I GCNNGC 5 cut(s) 708, 888, 1197, 1299, 1559
BstDEI CTNAG 7 cut(s) 156, 183, 363, 711, 1243, 1551, 1590
BstDSI CCRYGG 1 cut(s) 1811
BstF5I GGATG 5 cut(s) 331, 692, 895, 1312, 1843
BstH2I RGCGCY 2 cut(s) 1077, 1506
BstHHI GCGC 2 cut(s) 1076, 1505
BstMAI GTCTC 5 cut(s) 167, 353, 377, 621, 647
BstMWI GCNNNNNNNGC 6 cut(s) 716, 725, 734, 892, 1106, 1853
BstNI CCWGG 2 cut(s) 32, 917
BstSCI CCNGG 2 cut(s) 30, 915
BstSFI CTRYAG 2 cut(s) 177, 849
BstV1I GCAGC 4 cut(s) 247, 715, 835, 1492
BstX2I RGATCY 4 cut(s) 151, 629, 1285, 1413
BstYI RGATCY 4 cut(s) 151, 629, 1285, 1413
Bsu36I CCTNAGG 1 cut(s) 156
BtgI CCRYGG 1 cut(s) 1811
BtrI CACGTC 1 cut(s) 1754
BtsCI GGATG 5 cut(s) 331, 692, 895, 1312, 1843
Cac8I GCNNGC 5 cut(s) 708, 888, 1197, 1299, 1559
CciI TCATGA 1 cut(s) 1290
CfoI GCGC 2 cut(s) 1076, 1505
Cfr10I RCCGGY 2 cut(s) 238, 927
CseI GACGC 2 cut(s) 979, 1303
Csp6I GTAC 6 cut(s) 874, 1147, 1322, 1346, 1484, 1603
CspCI CAANNNNNGTGG 6 cut(s) 271, 306, 1674, 1709, 1746, 1781
CviQI GTAC 6 cut(s) 874, 1147, 1322, 1346, 1484, 1603
DdeI CTNAG 7 cut(s) 156, 183, 363, 711, 1243, 1551, 1590
DraI TTTAAA 1 cut(s) 1353
Eam1104I CTCTTC 3 cut(s) 75, 1243, 1591
EarI CTCTTC 3 cut(s) 75, 1243, 1591
EciI GGCGGA 1 cut(s) 827
Eco130I CCWWGG 2 cut(s) 1050, 1811
Eco24I GRGCYC 1 cut(s) 106
Eco31I GGTCTC 2 cut(s) 353, 621
Eco47III AGCGCT 1 cut(s) 1504
Eco57I CTGAAG 4 cut(s) 38, 38, 661, 1734
Eco72I CACGTG 1 cut(s) 1760
Eco81I CCTNAGG 1 cut(s) 156
EcoRII CCWGG 2 cut(s) 30, 915
EcoT14I CCWWGG 2 cut(s) 1050, 1811
EcoT38I GRGCYC 1 cut(s) 106
ErhI CCWWGG 2 cut(s) 1050, 1811
FalI AAGNNNNNCTT 2 cut(s) 947, 979
FauI CCCGC 1 cut(s) 1715
FauNDI CATATG 1 cut(s) 700
FbaI TGATCA 1 cut(s) 226
Fnu4HI GCNGC 4 cut(s) 236, 729, 849, 1506
FokI GGATG 5 cut(s) 338, 679, 882, 1299, 1850
FriOI GRGCYC 1 cut(s) 106
Fsp4HI GCNGC 4 cut(s) 236, 729, 849, 1506
FspBI CTAG 3 cut(s) 546, 650, 1334
GlaI GCGC 2 cut(s) 1075, 1504
GluI GCNGC 4 cut(s) 236, 729, 849, 1506
GsuI CTGGAG 2 cut(s) 14, 1148
HaeII RGCGCY 2 cut(s) 1077, 1506
HapII CCGG 2 cut(s) 239, 928
HgaI GACGC 2 cut(s) 979, 1303
HhaI GCGC 2 cut(s) 1076, 1505
Hin6I GCGC 2 cut(s) 1074, 1503
HinP1I GCGC 2 cut(s) 1074, 1503
HincII GTYRAC 1 cut(s) 1733
HindII GTYRAC 1 cut(s) 1733
HindIII AAGCTT 3 cut(s) 1299, 1307, 1578
HpaII CCGG 2 cut(s) 239, 928
HphI GGTGA 4 cut(s) 155, 845, 1421, 1850
Hpy166II GTNNAC 4 cut(s) 906, 1090, 1733, 1757
Hpy8I GTNNAC 4 cut(s) 906, 1090, 1733, 1757
HpyAV CCTTC 3 cut(s) 16, 552, 1709
HpyCH4III ACNGT 3 cut(s) 589, 878, 1321
HpyCH4IV ACGT 3 cut(s) 482, 1753, 1759
HpyCH4V TGCA 7 cut(s) 235, 731, 851, 1035, 1199, 1666, 1847
HpyF10VI GCNNNNNNNGC 6 cut(s) 716, 725, 734, 892, 1106, 1853
HpyF3I CTNAG 7 cut(s) 156, 183, 363, 711, 1243, 1551, 1590
HpySE526I ACGT 3 cut(s) 482, 1753, 1759
HspAI GCGC 2 cut(s) 1074, 1503
Ksp22I TGATCA 1 cut(s) 226
LmnI GCTCC 5 cut(s) 101, 883, 1129, 1228, 1500
Lsp1109I GCAGC 4 cut(s) 247, 715, 835, 1492
LweI GCATC 4 cut(s) 190, 904, 1629, 1843
MaeI CTAG 3 cut(s) 546, 650, 1334
MaeII ACGT 3 cut(s) 482, 1753, 1759
MaeIII GTNAC 2 cut(s) 665, 920
MflI RGATCY 4 cut(s) 151, 629, 1285, 1413
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 7 cut(s) 610, 1133, 1180, 1456, 1490, 1660, 1819
MlyI GAGTC 4 cut(s) 576, 803, 1786, 1808
MmeI TCCRAC 4 cut(s) 414, 912, 1005, 1340
MseI TTAA 4 cut(s) 117, 822, 939, 1352
MslI CAYNNNNRTG 2 cut(s) 806, 983
MspI CCGG 2 cut(s) 239, 928
MspR9I CCNGG 2 cut(s) 32, 917
Mva1269I GAATGC 1 cut(s) 1384
MvaI CCWGG 2 cut(s) 32, 917
MwoI GCNNNNNNNGC 6 cut(s) 716, 725, 734, 892, 1106, 1853
NcoI CCATGG 1 cut(s) 1811
NdeI CATATG 1 cut(s) 700
NlaIV GGNNCC 3 cut(s) 103, 1230, 1543
NspV TTCGAA 2 cut(s) 47, 1268
PagI TCATGA 1 cut(s) 1290
PctI GAATGC 1 cut(s) 1384
PfeI GAWTC 9 cut(s) 44, 95, 401, 443, 457, 854, 1406, 1523, 1634
PfoI TCCNGGA 1 cut(s) 30
PkrI GCNGC 4 cut(s) 237, 730, 850, 1507
PleI GAGTC 4 cut(s) 575, 802, 1785, 1807
PmaCI CACGTG 1 cut(s) 1760
PmlI CACGTG 1 cut(s) 1760
PpsI GAGTC 4 cut(s) 575, 802, 1785, 1807
Ppu21I YACGTR 1 cut(s) 1760
PshBI ATTAAT 1 cut(s) 117
Psp6I CCWGG 2 cut(s) 30, 915
PspCI CACGTG 1 cut(s) 1760
PspGI CCWGG 2 cut(s) 30, 915
PspN4I GGNNCC 3 cut(s) 103, 1230, 1543
PstI CTGCAG 1 cut(s) 853
PsuI RGATCY 4 cut(s) 151, 629, 1285, 1413
RsaI GTAC 6 cut(s) 875, 1148, 1323, 1347, 1485, 1604
RsaNI GTAC 6 cut(s) 874, 1147, 1322, 1346, 1484, 1603
RseI CAYNNNNRTG 2 cut(s) 806, 983
SaqAI TTAA 4 cut(s) 117, 822, 939, 1352
SatI GCNGC 4 cut(s) 236, 729, 849, 1506
ScaI AGTACT 2 cut(s) 1323, 1604
SchI GAGTC 4 cut(s) 576, 803, 1786, 1808
ScrFI CCNGG 2 cut(s) 32, 917
SduI GDGCHC 1 cut(s) 106
SfaNI GCATC 4 cut(s) 190, 904, 1629, 1843
SfcI CTRYAG 2 cut(s) 177, 849
SfuI TTCGAA 2 cut(s) 47, 1268
SmiMI CAYNNNNRTG 2 cut(s) 806, 983
SmlI CTYRAG 3 cut(s) 461, 528, 1379
SmoI CTYRAG 3 cut(s) 461, 528, 1379
SpeI ACTAGT 1 cut(s) 1333
Sse9I AATT 7 cut(s) 610, 1133, 1180, 1456, 1490, 1660, 1819
SsiI CCGC 3 cut(s) 203, 812, 1722
SspMI CTAG 3 cut(s) 546, 650, 1334
StyD4I CCNGG 2 cut(s) 30, 915
StyI CCWWGG 2 cut(s) 1050, 1811
TaaI ACNGT 3 cut(s) 589, 878, 1321
TaiI ACGT 3 cut(s) 485, 1756, 1762
TaqI TCGA 7 cut(s) 47, 113, 126, 257, 619, 1268, 1637
TasI AATT 7 cut(s) 610, 1133, 1180, 1456, 1490, 1660, 1819
TatI WGTACW 3 cut(s) 1321, 1483, 1602
TfiI GAWTC 9 cut(s) 44, 95, 401, 443, 457, 854, 1406, 1523, 1634
Tru1I TTAA 4 cut(s) 117, 822, 939, 1352
Tru9I TTAA 4 cut(s) 117, 822, 939, 1352
TseI GCWGC 4 cut(s) 235, 728, 848, 1505
TspDTI ATGAA 7 cut(s) 54, 162, 342, 681, 963, 1301, 1419
TspGWI ACGGA 1 cut(s) 900
VspI ATTAAT 1 cut(s) 117
XapI RAATTY 1 cut(s) 1180
XbaI TCTAGA 2 cut(s) 545, 649
XcmI CCANNNNNNNNNTGG 2 cut(s) 609, 749
XspI CTAG 3 cut(s) 546, 650, 1334
ZrmI AGTACT 2 cut(s) 1323, 1604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.