Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007094

Physical Location & Seq

Genomic Coordinates Reverse (-)

14675309 .. 14678743

Gene Structure 3435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00294650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1755 bp

ATGTCCGCTCGGTATCTGAAGAAAGTTCTCAAGGAAGAACAAGAGGAGCGACAACTGGAATCAGACCACGAAGAAGAAGACGACCATCGCCAGCTCAACGGCAAAGCAAAGATCAACCCTTTCGACCTCCTCAACGAAGACGACGACCAGGAGGATGAGTCAGAAACTGTTGATGAACCCTCGAGTGTGGTGAAGCCTAGTGCTGATGTGGTTTCGACATCCAGTCAAAAATCCAAGAAGAAGAAGAAGAAGAAAGGCAAAGAGGGCTCTTCTTCTAATGCAGCTGCACCGAGAGTTAAAAAGTCGCCGGATGAGGTTCTTGAAGAATTCTATGACTATGCGCATGAAAGACAAGCCGAGACGAGGGCTAGTGGTGTTGCGGTTAAGCATTCGTATGAAAAGTATGTGCCCTTCATATTGCAAGTGGATCCCAAGTACTTGAATGCCGACAATGAGATGCGAAGAATCTTTGGGGCTAAGGTGGTGAAGTCGTTTGAGAAGAATCAACAGAGTGGGAGTTCTAGAATGGCGCGTGGTGGAAGACGTGCGGTTCATAGGAAGTCTTTCCTTGTCACTCCGTTGGAGCATTGGCCTCGCTGGGACGGTGCTATGAACATGGAACTCCTTCACTCGCCTAATGGATACTATGATTATCGATATACCTATTCATCAGCCTACAGTCAAGCTCAGAGTGCATTTGAATCTGCCAAAGCTATACATGATCTCAATGCCATTGCAAGTGTTTTATTATACTATCCTTACCATTTGGATTCGCTACTAACCATGGCAGAGTACTTTAAGTTTGTGGGTGAGCATCAAATGTCAGCAGATGCTATCTCGAAGTGCTTATATGCTTTGGAATGTGCATGGTCTCCAATACGTGGCTGTCATCGATCTGCTTTAGAAGTTTGCAAGTTTTTACTGTCACTAGATACTGACGACCCAATGGGGGCCATGTTCTGTATTGACTATTTTGCGGTGAGGGCAGAGGAGTATGCATGGCTAGAACGTTTCTCTGAAGAATATAAAAGTGATAACACCCTATGGTTGTTTCCAAATTTTTCATATTCCCTTGCCGTATGCCGATTGTATCTTGAGAAAGCAGAATCTTCCAAAGATCCAGCTATGGAAACCACCAAGGCTACTTCGACTGATCTTATGAAGCAGGCATTGATGCTTCATCCCACAGTTCTCAAGAAACTAGTGGCAAAGGTACCTTTGAAGGAACGGGTGTGGACGGATATACTCAAAAATGCATTCTTCCAAGCAGATGAAGTAGGAATCCCATCCTTGGACCACCTGATTAACATATACATTGAGAGTAATCATATTATATGGAGGCTTCCAGAATTGCAGAAATTGCTGCGGGAAGCAGCACAGCTGGTGATCAAGACTCTAAGACAGAATAGTAGTGAAAAGAATGATTGGGCATGTGTGAGAAAAGAAGCATTCTCATCTGACAAGAATGAGTATTCCCACTTGTTGGTTTCAGACTTCTCTTATACATTGCCTGCTGCCCCACCTGAAAATTTGCAACATTTTATGGCCAATGCAAGGATGGAGGATGTGTTACCCAATGAGCAGCATCTTGTCAATCTAAATGAGGGTGGCCATGCTCCCCGTGATGTTGCAAATCGAAATCCATTAGCGGTCTTGTTTGAGTCGGTGTTACCATGGGTTCATTATGGGGAAGGAGCGTTTGTTGAGGAGGAAGACCAACAAAATGGCCATGGTCCGGGCAATCAAGAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tcf25

Protein Analysis

584

Amino Acids

66.82

Weight (kDa)

5.62

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tcf25	PF04910	218 - 291	5e-14	Transcriptional repressor TCF25
Tcf25	PF04910	294 - 525	2.9e-37	Transcriptional repressor TCF25

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46900
fragaria_vesca	FvH4_7g18270 FvH4_7g18270
malus_domestica	MD01G1098500.v1.1 MD02G1051800.v1.1 MD07G1165200.v1.1
prunus_persica	Prupe.2G203900_v2.0.a1 Prupe.2G203900_v2.0.a1
pyrus_communis	pycom01g11990 pycom01g12090 pycom01g12230 pycom01g12240 pycom01g12540 pycom07g16040
rosa_chinensis	RchiOBHm_Chr1g0361851
rosa_laevigata	RLG00000027697
rosa_multiflora	Rmu_ssc0000124.1_g000015 Rmu_ssc0000124.1_g000023
rosa_roxburghii	Rroxscaffold_4G00294650
rosa_rugosa	Rorug01G0291900
rosa_samantha	Rh1AG302500 Rh1BG265600 Rh1CG283700 Rh1DG295600
rosa_wichuraiana	Rw1G026800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	342
Acc65I	GGTACC	1 cut(s)	1213
AccB1I	GGYRCC	1 cut(s)	1213
AccB7I	CCANNNNNTGG	2 cut(s)	881, 1483
AccBSI	CCGCTC	1 cut(s)	8
AccII	CGCG	1 cut(s)	532
AciI	CCGC	6 cut(s)	6, 380, 548, 977, 1366, 1649
AclI	AACGTT	1 cut(s)	1009
AclWI	GGATC	3 cut(s)	422, 435, 1112
AcoI	YGGCCR	3 cut(s)	1545, 1609, 1726
AcsI	RAATTY	3 cut(s)	326, 1057, 1528
AcuI	CTGAAG	2 cut(s)	38, 1038
AfaI	GTAC	3 cut(s)	437, 794, 1215
AfiI	CCNNNNNNNGG	7 cut(s)	363, 881, 949, 1291, 1483, 1554, 1735
AgsI	TTSAA	4 cut(s)	323, 442, 701, 1222
AhdI	GACNNNNNGTC	1 cut(s)	222
AhlI	ACTAGT	1 cut(s)	1201
AjiI	CACGTC	1 cut(s)	545
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	6 cut(s)	94, 284, 686, 713, 1124, 1381
AluI	AGCT	6 cut(s)	94, 284, 686, 713, 1124, 1381
Alw26I	GTCTC	2 cut(s)	353, 876
AlwI	GGATC	3 cut(s)	422, 435, 1112
AlwNI	CAGNNNCTG	1 cut(s)	167
Ama87I	CYCGRG	1 cut(s)	181
AoxI	GGCC	5 cut(s)	590, 951, 1545, 1609, 1726
ApeKI	GCWGC	6 cut(s)	281, 284, 1363, 1373, 1514, 1582
ApoI	RAATTY	3 cut(s)	326, 1057, 1528
Asp700I	GAANNNNTTC	2 cut(s)	563, 624
Asp718I	GGTACC	1 cut(s)	1213
AspLEI	GCGC	2 cut(s)	343, 532
AspS9I	GGNCC	3 cut(s)	951, 1294, 1733
AsuC2I	CCSGG	1 cut(s)	1737
AsuHPI	GGTGA	5 cut(s)	202, 496, 821, 991, 1396
AvaI	CYCGRG	1 cut(s)	181
AvaII	GGWCC	2 cut(s)	1294, 1733
BaeGI	GKGCMC	1 cut(s)	411
BalI	TGGCCA	3 cut(s)	1547, 1611, 1728
BamHI	GGATCC	1 cut(s)	427
BanI	GGYRCC	1 cut(s)	1213
BanII	GRGCYC	1 cut(s)	269
BarI	GAAGNNNNNNTAC	2 cut(s)	395, 427
BbsI	GAAGAC	4 cut(s)	84, 144, 547, 1719
BbvI	GCAGC	6 cut(s)	271, 293, 1350, 1385, 1501, 1594
BccI	CCATC	3 cut(s)	93, 1294, 1552
BceAI	ACGGC	2 cut(s)	115, 1061
BcgI	CGANNNNNNTGC	2 cut(s)	575, 609
BciT130I	CCWGG	1 cut(s)	149
BciVI	GTATCC	1 cut(s)	635
BclI	TGATCA	1 cut(s)	1386
BcnI	CCSGG	1 cut(s)	1737
BcoDI	GTCTC	2 cut(s)	353, 876
BcuI	ACTAGT	1 cut(s)	1201
BfaI	CTAG	6 cut(s)	198, 369, 522, 929, 1004, 1202
BfmI	CTRYAG	1 cut(s)	676
BfuI	GTATCC	1 cut(s)	635
BisI	GCNGC	6 cut(s)	282, 285, 1364, 1374, 1515, 1583
BlsI	GCNGC	6 cut(s)	283, 286, 1365, 1375, 1516, 1584
BmcAI	AGTACT	2 cut(s)	437, 794
Bme1390I	CCNGG	2 cut(s)	149, 1737
Bme18I	GGWCC	2 cut(s)	1294, 1733
BmeRI	GACNNNNNGTC	1 cut(s)	222
BmeT110I	CYCGRG	1 cut(s)	181
BmgBI	CACGTC	1 cut(s)	545
BmgT120I	GGNCC	3 cut(s)	951, 1294, 1733
BmiI	GGNNCC	3 cut(s)	429, 952, 1215
BmrFI	CCNGG	2 cut(s)	149, 1737
BmsI	GCATC	5 cut(s)	447, 820, 823, 1164, 1594
BpiI	GAAGAC	4 cut(s)	84, 144, 547, 1719
Bpu10I	CCTNAGC	1 cut(s)	477
BpuEI	CTTGAG	3 cut(s)	14, 1115, 1178
BpuMI	CCSGG	1 cut(s)	1737
Bsa29I	ATCGAT	2 cut(s)	655, 892
BsaAI	YACGTR	1 cut(s)	881
BsaI	GGTCTC	1 cut(s)	876
BsaJI	CCNNGG	5 cut(s)	783, 1137, 1290, 1673, 1729
BsaXI	ACNNNNNCTCC	6 cut(s)	143, 173, 1553, 1583, 1686, 1716
Bsc4I	CCNNNNNNNGG	7 cut(s)	363, 881, 949, 1291, 1483, 1554, 1735
Bse1I	ACTGG	2 cut(s)	60, 222
Bse3DI	GCAATG	2 cut(s)	732, 1505
BseBI	CCWGG	1 cut(s)	149
BseCI	ATCGAT	2 cut(s)	655, 892
BseDI	CCNNGG	5 cut(s)	783, 1137, 1290, 1673, 1729
BseGI	GGATG	7 cut(s)	160, 218, 316, 1180, 1286, 1563, 1570
BseLI	CCNNNNNNNGG	7 cut(s)	363, 881, 949, 1291, 1483, 1554, 1735
BseMI	GCAATG	2 cut(s)	732, 1505
BseMII	CTCAG	1 cut(s)	701
BseNI	ACTGG	2 cut(s)	60, 222
BseRI	GAGGAG	4 cut(s)	59, 119, 1004, 1721
BseSI	GKGCMC	1 cut(s)	411
BseXI	GCAGC	6 cut(s)	271, 293, 1350, 1385, 1501, 1594
BseYI	CCCAGC	1 cut(s)	597
BsgI	GTGCAG	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	532
BshFI	GGCC	5 cut(s)	592, 953, 1547, 1611, 1728
BshNI	GGYRCC	1 cut(s)	1213
BshVI	ATCGAT	2 cut(s)	655, 892
BsiHKCI	CYCGRG	1 cut(s)	181
BsiSI	CCGG	2 cut(s)	308, 1736
BslFI	GGGAC	1 cut(s)	614
BslI	CCNNNNNNNGG	7 cut(s)	363, 881, 949, 1291, 1483, 1554, 1735
BsmAI	GTCTC	2 cut(s)	353, 876
BsmBI	CGTCTC	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	614
BsmI	GAATGC	4 cut(s)	388, 448, 1256, 1448
BsnI	GGCC	5 cut(s)	592, 953, 1547, 1611, 1728
Bso31I	GGTCTC	1 cut(s)	876
BsoBI	CYCGRG	1 cut(s)	181
Bsp1286I	GDGCHC	2 cut(s)	269, 411
Bsp143I	GATC	7 cut(s)	111, 427, 721, 893, 1117, 1153, 1386
Bsp19I	CCATGG	3 cut(s)	783, 1673, 1729
BspACI	CCGC	6 cut(s)	6, 380, 548, 977, 1366, 1649
BspANI	GGCC	5 cut(s)	592, 953, 1547, 1611, 1728
BspCNI	CTCAG	1 cut(s)	700
BspDI	ATCGAT	2 cut(s)	655, 892
BspFNI	CGCG	1 cut(s)	532
BspLI	GGNNCC	3 cut(s)	429, 952, 1215
BspPI	GGATC	3 cut(s)	422, 435, 1112
BspQI	GCTCTTC	1 cut(s)	274
BspT107I	GGYRCC	1 cut(s)	1213
BspTNI	GGTCTC	1 cut(s)	876
BsrBI	CCGCTC	1 cut(s)	8
BsrDI	GCAATG	2 cut(s)	732, 1505
BsrI	ACTGG	2 cut(s)	60, 222
BssECI	CCNNGG	5 cut(s)	783, 1137, 1290, 1673, 1729
BssMI	GATC	7 cut(s)	111, 427, 721, 893, 1117, 1153, 1386
BssT1I	CCWWGG	5 cut(s)	783, 1137, 1290, 1673, 1729
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	5 cut(s)	169, 605, 680, 924, 1189
Bst6I	CTCTTC	1 cut(s)	274
BstAPI	GCANNNNNTGC	1 cut(s)	1360
BstBAI	YACGTR	1 cut(s)	881
BstC8I	GCNNGC	3 cut(s)	92, 1167, 1512
BstDEI	CTNAG	3 cut(s)	477, 687, 1397
BstDSI	CCRYGG	3 cut(s)	783, 1673, 1729
BstF5I	GGATG	7 cut(s)	160, 218, 316, 1180, 1286, 1563, 1570
BstFNI	CGCG	1 cut(s)	532
BstHHI	GCGC	2 cut(s)	343, 532
BstKTI	GATC	7 cut(s)	114, 430, 724, 896, 1120, 1156, 1389
BstMAI	GTCTC	2 cut(s)	353, 876
BstMBI	GATC	7 cut(s)	111, 427, 721, 893, 1117, 1153, 1386
BstMWI	GCNNNNNNNGC	4 cut(s)	264, 692, 983, 1360
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	1 cut(s)	1434
BstSCI	CCNGG	2 cut(s)	147, 1735
BstSFI	CTRYAG	1 cut(s)	676
BstSLI	GKGCMC	1 cut(s)	411
BstUI	CGCG	1 cut(s)	532
BstV1I	GCAGC	6 cut(s)	271, 293, 1350, 1385, 1501, 1594
BstV2I	GAAGAC	4 cut(s)	84, 144, 547, 1719
BstX2I	RGATCY	2 cut(s)	427, 1117
BstXI	CCANNNNNNTGG	1 cut(s)	1724
BstYI	RGATCY	2 cut(s)	427, 1117
Bsu15I	ATCGAT	2 cut(s)	655, 892
BsuI	GTATCC	1 cut(s)	635
BsuRI	GGCC	5 cut(s)	592, 953, 1547, 1611, 1728
BsuTUI	ATCGAT	2 cut(s)	655, 892
BtgI	CCRYGG	3 cut(s)	783, 1673, 1729
BtgZI	GCGATG	1 cut(s)	71
BtrI	CACGTC	1 cut(s)	545
BtsCI	GGATG	7 cut(s)	160, 218, 316, 1180, 1286, 1563, 1570
Cac8I	GCNNGC	3 cut(s)	92, 1167, 1512
CaiI	CAGNNNCTG	1 cut(s)	167
CfoI	GCGC	2 cut(s)	343, 532
Cfr13I	GGNCC	3 cut(s)	951, 1294, 1733
ClaI	ATCGAT	2 cut(s)	655, 892
Csp6I	GTAC	3 cut(s)	436, 793, 1214
CviQI	GTAC	3 cut(s)	436, 793, 1214
DdeI	CTNAG	3 cut(s)	477, 687, 1397
DpnI	GATC	7 cut(s)	113, 429, 723, 895, 1119, 1155, 1388
DpnII	GATC	7 cut(s)	111, 427, 721, 893, 1117, 1153, 1386
DriI	GACNNNNNGTC	1 cut(s)	222
EaeI	YGGCCR	3 cut(s)	1545, 1609, 1726
Eam1104I	CTCTTC	1 cut(s)	274
Eam1105I	GACNNNNNGTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	274
Eco130I	CCWWGG	5 cut(s)	783, 1137, 1290, 1673, 1729
Eco24I	GRGCYC	1 cut(s)	269
Eco31I	GGTCTC	1 cut(s)	876
Eco47I	GGWCC	2 cut(s)	1294, 1733
Eco57I	CTGAAG	2 cut(s)	38, 1038
Eco88I	CYCGRG	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	5 cut(s)	783, 1137, 1290, 1673, 1729
EcoT22I	ATGCAT	2 cut(s)	1000, 1258
EcoT38I	GRGCYC	1 cut(s)	269
ErhI	CCWWGG	5 cut(s)	783, 1137, 1290, 1673, 1729
Esp3I	CGTCTC	1 cut(s)	353
FaqI	GGGAC	1 cut(s)	614
FauI	CCCGC	1 cut(s)	1359
FbaI	TGATCA	1 cut(s)	1386
Fnu4HI	GCNGC	6 cut(s)	282, 285, 1364, 1374, 1515, 1583
FokI	GGATG	7 cut(s)	167, 205, 323, 1167, 1273, 1570, 1577
FriOI	GRGCYC	1 cut(s)	269
Fsp4HI	GCNGC	6 cut(s)	282, 285, 1364, 1374, 1515, 1583
FspAI	RTGCGCAY	1 cut(s)	342
FspBI	CTAG	6 cut(s)	198, 369, 522, 929, 1004, 1202
FspI	TGCGCA	1 cut(s)	342
GlaI	GCGC	2 cut(s)	342, 531
GluI	GCNGC	6 cut(s)	282, 285, 1364, 1374, 1515, 1583
GsaI	CCCAGC	1 cut(s)	601
HaeIII	GGCC	5 cut(s)	592, 953, 1547, 1611, 1728
HapII	CCGG	2 cut(s)	308, 1736
HhaI	GCGC	2 cut(s)	343, 532
Hin6I	GCGC	2 cut(s)	341, 530
HinP1I	GCGC	2 cut(s)	341, 530
HpaII	CCGG	2 cut(s)	308, 1736
HphI	GGTGA	5 cut(s)	202, 496, 821, 991, 1396
Hpy166II	GTNNAC	1 cut(s)	1236
Hpy188I	TCNGA	7 cut(s)	18, 64, 163, 690, 1018, 1459, 1492
Hpy188III	TCNNGA	8 cut(s)	320, 522, 838, 1094, 1195, 1346, 1390, 1745
Hpy8I	GTNNAC	1 cut(s)	1236
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	4 cut(s)	421, 635, 1216, 1685
HpyCH4III	ACNGT	5 cut(s)	169, 605, 680, 924, 1189
HpyCH4IV	ACGT	3 cut(s)	544, 880, 1009
HpyF10VI	GCNNNNNNNGC	4 cut(s)	264, 692, 983, 1360
HpyF3I	CTNAG	3 cut(s)	477, 687, 1397
HpySE526I	ACGT	3 cut(s)	544, 880, 1009
HspAI	GCGC	2 cut(s)	341, 530
KpnI	GGTACC	1 cut(s)	1217
Ksp22I	TGATCA	1 cut(s)	1386
Kzo9I	GATC	7 cut(s)	111, 427, 721, 893, 1117, 1153, 1386
LguI	GCTCTTC	1 cut(s)	274
LmnI	GCTCC	4 cut(s)	46, 583, 1621, 1694
Lsp1109I	GCAGC	6 cut(s)	271, 293, 1350, 1385, 1501, 1594
LweI	GCATC	5 cut(s)	447, 820, 823, 1164, 1594
MaeI	CTAG	6 cut(s)	198, 369, 522, 929, 1004, 1202
MaeII	ACGT	3 cut(s)	544, 880, 1009
MaeIII	GTNAC	4 cut(s)	571, 924, 1569, 1668
MalI	GATC	7 cut(s)	113, 429, 723, 895, 1119, 1155, 1388
MbiI	CCGCTC	1 cut(s)	8
MboI	GATC	7 cut(s)	111, 427, 721, 893, 1117, 1153, 1386
MflI	RGATCY	2 cut(s)	427, 1117
MhlI	GDGCHC	2 cut(s)	269, 411
MlsI	TGGCCA	3 cut(s)	1547, 1611, 1728
MluCI	AATT	5 cut(s)	326, 1057, 1349, 1358, 1528
MluNI	TGGCCA	3 cut(s)	1547, 1611, 1728
MlyI	GAGTC	3 cut(s)	167, 1387, 1670
MmeI	TCCRAC	1 cut(s)	561
Mox20I	TGGCCA	3 cut(s)	1547, 1611, 1728
Mph1103I	ATGCAT	2 cut(s)	1000, 1258
MroXI	GAANNNNTTC	2 cut(s)	563, 624
MscI	TGGCCA	3 cut(s)	1547, 1611, 1728
MseI	TTAA	4 cut(s)	297, 384, 798, 1305
MslI	CAYNNNNRTG	1 cut(s)	393
Msp20I	TGGCCA	3 cut(s)	1547, 1611, 1728
MspA1I	CMGCKG	2 cut(s)	284, 1381
MspI	CCGG	2 cut(s)	308, 1736
MspR9I	CCNGG	2 cut(s)	149, 1737
Mva1269I	GAATGC	4 cut(s)	388, 448, 1256, 1448
MvaI	CCWGG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	532
MwoI	GCNNNNNNNGC	4 cut(s)	264, 692, 983, 1360
NciI	CCSGG	1 cut(s)	1737
NcoI	CCATGG	3 cut(s)	783, 1673, 1729
NdeII	GATC	7 cut(s)	111, 427, 721, 893, 1117, 1153, 1386
NlaIV	GGNNCC	3 cut(s)	429, 952, 1215
NmeAIII	GCCGAG	1 cut(s)	382
NmuCI	GTSAC	2 cut(s)	571, 924
NsbI	TGCGCA	1 cut(s)	342
NsiI	ATGCAT	2 cut(s)	1000, 1258
NspI	RCATGY	1 cut(s)	1434
PaeR7I	CTCGAG	1 cut(s)	181
PciSI	GCTCTTC	1 cut(s)	274
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PctI	GAATGC	4 cut(s)	388, 448, 1256, 1448
PdmI	GAANNNNTTC	2 cut(s)	563, 624
PfeI	GAWTC	7 cut(s)	59, 465, 502, 701, 770, 1106, 1281
PflMI	CCANNNNNTGG	2 cut(s)	881, 1483
PkrI	GCNGC	6 cut(s)	283, 286, 1365, 1375, 1516, 1584
PleI	GAGTC	3 cut(s)	166, 1387, 1669
PpsI	GAGTC	3 cut(s)	166, 1387, 1669
Ppu21I	YACGTR	1 cut(s)	881
Psp1406I	AACGTT	1 cut(s)	1009
Psp6I	CCWGG	1 cut(s)	147
PspFI	CCCAGC	1 cut(s)	597
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	3 cut(s)	429, 952, 1215
PspPI	GGNCC	3 cut(s)	951, 1294, 1733
PspXI	VCTCGAGB	1 cut(s)	181
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	2 cut(s)	427, 1117
PvuII	CAGCTG	2 cut(s)	284, 1381
RsaI	GTAC	3 cut(s)	437, 794, 1215
RsaNI	GTAC	3 cut(s)	436, 793, 1214
RseI	CAYNNNNRTG	1 cut(s)	393
SapI	GCTCTTC	1 cut(s)	274
SaqAI	TTAA	4 cut(s)	297, 384, 798, 1305
SatI	GCNGC	6 cut(s)	282, 285, 1364, 1374, 1515, 1583
Sau3AI	GATC	7 cut(s)	111, 427, 721, 893, 1117, 1153, 1386
Sau96I	GGNCC	3 cut(s)	951, 1294, 1733
ScaI	AGTACT	2 cut(s)	437, 794
SchI	GAGTC	3 cut(s)	167, 1387, 1670
ScrFI	CCNGG	2 cut(s)	149, 1737
SduI	GDGCHC	2 cut(s)	269, 411
SfaNI	GCATC	5 cut(s)	447, 820, 823, 1164, 1594
SfcI	CTRYAG	1 cut(s)	676
Sfr274I	CTCGAG	1 cut(s)	181
SinI	GGWCC	2 cut(s)	1294, 1733
SlaI	CTCGAG	1 cut(s)	181
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	4 cut(s)	29, 181, 1094, 1193
SmoI	CTYRAG	4 cut(s)	29, 181, 1094, 1193
SpeI	ACTAGT	1 cut(s)	1201
Sse9I	AATT	5 cut(s)	326, 1057, 1349, 1358, 1528
SsiI	CCGC	6 cut(s)	6, 380, 548, 977, 1366, 1649
SspMI	CTAG	6 cut(s)	198, 369, 522, 929, 1004, 1202
StyD4I	CCNGG	2 cut(s)	147, 1735
StyI	CCWWGG	5 cut(s)	783, 1137, 1290, 1673, 1729
TaaI	ACNGT	5 cut(s)	169, 605, 680, 924, 1189
TaiI	ACGT	3 cut(s)	547, 883, 1012
TaqI	TCGA	8 cut(s)	123, 182, 215, 655, 839, 892, 1148, 1636
TasI	AATT	5 cut(s)	326, 1057, 1349, 1358, 1528
TatI	WGTACW	2 cut(s)	435, 792
TfiI	GAWTC	7 cut(s)	59, 465, 502, 701, 770, 1106, 1281
Tru1I	TTAA	4 cut(s)	297, 384, 798, 1305
Tru9I	TTAA	4 cut(s)	297, 384, 798, 1305
TseFI	GTSAC	2 cut(s)	571, 924
TseI	GCWGC	6 cut(s)	281, 284, 1363, 1373, 1514, 1582
Tsp45I	GTSAC	2 cut(s)	571, 924
TspGWI	ACGGA	2 cut(s)	567, 1253
Van91I	CCANNNNNTGG	2 cut(s)	881, 1483
VpaK11BI	GGWCC	2 cut(s)	1294, 1733
XapI	RAATTY	3 cut(s)	326, 1057, 1528
XbaI	TCTAGA	1 cut(s)	521
XceI	RCATGY	1 cut(s)	1434
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1555
XhoI	CTCGAG	1 cut(s)	181
XmnI	GAANNNNTTC	2 cut(s)	563, 624
XspI	CTAG	6 cut(s)	198, 369, 522, 929, 1004, 1202
ZrmI	AGTACT	2 cut(s)	437, 794
Zsp2I	ATGCAT	2 cut(s)	1000, 1258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.