Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007094

Physical Location & Seq

Genomic Coordinates Forward (+)

4247520 .. 4249624

Gene Structure 2105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1051800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGCTGAACAAAGTTTTGAAGGAACAAAAAGAAGAAGAGCTACACATAATAGAATCCGATTTGCAAGGAAAAGAAGAAAGCCAGCTTTTCAATGAAAAAGCTAAAATCAATCCCTTCAACCTCCTCATCGGCAGCGGCACCCACGACCACCAGTGTTCTGACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002178 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010506 GO:0010508 GO:0012505 GO:0016020 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

56

Amino Acids

6.35

Weight (kDa)

4.96

Isoelectric Point (pI)

60.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46900
fragaria_vesca	FvH4_7g18270 FvH4_7g18270
malus_domestica	MD01G1098500.v1.1 MD02G1051800.v1.1 MD07G1165200.v1.1
prunus_persica	Prupe.2G203900_v2.0.a1 Prupe.2G203900_v2.0.a1
pyrus_communis	pycom01g11990 pycom01g12090 pycom01g12230 pycom01g12240 pycom01g12540 pycom07g16040
rosa_chinensis	RchiOBHm_Chr1g0361851
rosa_laevigata	RLG00000027697
rosa_multiflora	Rmu_ssc0000124.1_g000015 Rmu_ssc0000124.1_g000023
rosa_roxburghii	Rroxscaffold_4G00294650
rosa_rugosa	Rorug01G0291900
rosa_samantha	Rh1AG302500 Rh1BG265600 Rh1CG283700 Rh1DG295600
rosa_wichuraiana	Rw1G026800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AciI	CCGC	1 cut(s)	135
AgsI	TTSAA	3 cut(s)	19, 91, 118
AluBI	AGCT	3 cut(s)	40, 85, 101
AluI	AGCT	3 cut(s)	40, 85, 101
ApeKI	GCWGC	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	137
BarI	GAAGNNNNNNTAC	2 cut(s)	24, 56
BbvI	GCAGC	1 cut(s)	144
BisI	GCNGC	2 cut(s)	133, 136
BlsI	GCNGC	2 cut(s)	134, 137
BmiI	GGNNCC	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	151
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	144
BshNI	GGYRCC	1 cut(s)	137
BspACI	CCGC	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	139
BspQI	GCTCTTC	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	158
Cac8I	GCNNGC	1 cut(s)	83
CviJI	RGCY	4 cut(s)	40, 81, 85, 101
CviKI_1	RGCY	4 cut(s)	40, 81, 85, 101
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
FaiI	YATR	1 cut(s)	47
Fnu4HI	GCNGC	2 cut(s)	133, 136
Fsp4HI	GCNGC	2 cut(s)	133, 136
GluI	GCNGC	2 cut(s)	133, 136
HinfI	GANTC	1 cut(s)	53
Hpy188I	TCNGA	2 cut(s)	58, 160
HpyAV	CCTTC	2 cut(s)	13, 124
HpyCH4V	TGCA	1 cut(s)	64
LguI	GCTCTTC	1 cut(s)	30
LpnPI	CCDG	2 cut(s)	95, 164
Lsp1109I	GCAGC	1 cut(s)	144
MboII	GAAGA	3 cut(s)	44, 47, 86
MnlI	CCTC	2 cut(s)	131, 134
MspA1I	CMGCKG	1 cut(s)	135
NlaIV	GGNNCC	1 cut(s)	139
PciSI	GCTCTTC	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	134, 137
PspN4I	GGNNCC	1 cut(s)	139
SapI	GCTCTTC	1 cut(s)	30
SatI	GCNGC	2 cut(s)	133, 136
SetI	ASST	4 cut(s)	42, 87, 103, 123
SgeI	CNNG	4 cut(s)	77, 94, 155, 163
SsiI	CCGC	1 cut(s)	135
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	53
TscAI	CASTG	1 cut(s)	158
TseI	GCWGC	1 cut(s)	132
TspDTI	ATGAA	1 cut(s)	108
TspRI	CASTG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.