Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007094

Physical Location & Seq

Genomic Coordinates Forward (+)

18536659 .. 18538808

Gene Structure 2150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g16040.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGTCCGGTCGAATGCTGAAGAAAGTTTTGAGGGAACAAGAAGAAGAACACGGACACGTAATAGAATCCGAATCAGAAGGCGAAGAAGAAAGCCAGCAGCTCAACGGAAAAGCTAAATTCAATCCCTTTGATCTCCTCAACGAGGACGGGGACAACGACGGCGACCACCAGGGGGATGAACCTGAAACTGTTGATGAACACTTGGTTGTTGTGCCTGAGCTGAAAACGAAGGTCGGTGTAGCGTCAACCAACAATCAGAAATCAAAGAAGAAGAAAAAGAAGAAAAGCAAAGAGGCTTCTTATTCTTCTTCGGGTGCTTCCAATGTAGAAAAGCCCCTGGATGTGATTCTTGAGTCGATCTCTTTGGATGGCCCCGAAAAAGCAGCCAGCGGAAAAGGTTGTGAGAATTTGGCTAAGCCATGTGCGCCCTCTGCGTTACAAGTGGATCCCAAGTACTTAAATGCTGAAAATGAGCTGCGGAGAATCTTTGGCTCTAAGGTGGTAAAGTCCTTTGAGAAACATGAGCGAAGTGGTGGCAGTTCTAGAATGGTGCGTGGTGGAAGACGTGCTGCTCATATTCCTAGAAAAACTATACTTGTCACTGCATCAGAGCATTGGCATCGCTGGGATGGTTCTTTGTCCATGGAATTTCTTGGAGTGATTGATGGATACCACCACTTTCGATATGTACATTCCTCATCCTACCTTCAAGCTCAGAGGGCATTTGAAGCTGCCAAAGCTACACATGACATCAATGGAATTGCAAGTATTTTGTTATACAGTCCTTATCATTTGGATTCGCTTATAACCATGGCAGAGTACTATAAGTTTTCGGGTGAACATCAAATATCAGCAGAACTTATCTCGAAGTGCTTATATGCTTTGGAATGTGCATGGAATCCAATGTTCACCCCCTTGCAGGGCAATTGCCAACTAAAATACAGCCATGAAACAAACAAGCCTCTGTTCACTGTACTTTTTACTCACATGAGAAATATGGATAGGCGCGGTTGCCATCGATCGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tcf25

Protein Analysis

343

Amino Acids

38.42

Weight (kDa)

7.0

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46900
fragaria_vesca	FvH4_7g18270 FvH4_7g18270
malus_domestica	MD01G1098500.v1.1 MD02G1051800.v1.1 MD07G1165200.v1.1
prunus_persica	Prupe.2G203900_v2.0.a1 Prupe.2G203900_v2.0.a1
pyrus_communis	pycom01g11990 pycom01g12090 pycom01g12230 pycom01g12240 pycom01g12540 pycom07g16040
rosa_chinensis	RchiOBHm_Chr1g0361851
rosa_laevigata	RLG00000027697
rosa_multiflora	Rmu_ssc0000124.1_g000015 Rmu_ssc0000124.1_g000023
rosa_roxburghii	Rroxscaffold_4G00294650
rosa_rugosa	Rorug01G0291900
rosa_samantha	Rh1AG302500 Rh1BG265600 Rh1CG283700 Rh1DG295600
rosa_wichuraiana	Rw1G026800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	806
AccII	CGCG	1 cut(s)	1008
AciI	CCGC	3 cut(s)	390, 478, 1008
AclWI	GGATC	2 cut(s)	440, 453
AcsI	RAATTY	3 cut(s)	116, 406, 647
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	4 cut(s)	455, 690, 821, 975
AfiI	CCNNNNNNNGG	4 cut(s)	142, 172, 919, 920
AflIII	ACRYGT	1 cut(s)	55
AgsI	TTSAA	3 cut(s)	121, 710, 728
AjiI	CACGTC	1 cut(s)	566
AjnI	CCWGG	2 cut(s)	168, 336
AluBI	AGCT	7 cut(s)	100, 113, 220, 475, 713, 731, 740
AluI	AGCT	7 cut(s)	100, 113, 220, 475, 713, 731, 740
AlwI	GGATC	2 cut(s)	440, 453
AoxI	GGCC	1 cut(s)	370
ApeKI	GCWGC	5 cut(s)	97, 383, 475, 569, 731
ApoI	RAATTY	3 cut(s)	116, 406, 647
AspLEI	GCGC	2 cut(s)	427, 1008
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	2 cut(s)	848, 901
BamHI	GGATCC	1 cut(s)	445
BbsI	GAAGAC	1 cut(s)	568
BbvI	GCAGC	5 cut(s)	109, 395, 462, 556, 718
BccI	CCATC	4 cut(s)	362, 623, 659, 1023
BceAI	ACGGC	1 cut(s)	175
BcgI	CGANNNNNNTGC	2 cut(s)	602, 636
BciT130I	CCWGG	2 cut(s)	170, 338
BciVI	GTATCC	1 cut(s)	662
BfaI	CTAG	3 cut(s)	543, 582, 1027
BfuI	GTATCC	1 cut(s)	662
BisI	GCNGC	5 cut(s)	98, 384, 476, 570, 732
BlpI	GCTNAGC	1 cut(s)	414
BlsI	GCNGC	5 cut(s)	99, 385, 477, 571, 733
BmcAI	AGTACT	2 cut(s)	455, 821
Bme1390I	CCNGG	2 cut(s)	170, 338
BmgBI	CACGTC	1 cut(s)	566
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	2 cut(s)	373, 447
BmrFI	CCNGG	2 cut(s)	170, 338
BmsI	GCATC	2 cut(s)	614, 628
BpiI	GAAGAC	1 cut(s)	568
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
Bpu10I	CCTNAGC	1 cut(s)	216
Bpu1102I	GCTNAGC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	371
Bsa29I	ATCGAT	2 cut(s)	1018, 1022
BsaAI	YACGTR	1 cut(s)	58
BsaJI	CCNNGG	4 cut(s)	169, 336, 642, 810
BsaWI	WCCGGW	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	4 cut(s)	142, 172, 919, 920
BseBI	CCWGG	2 cut(s)	170, 338
BseCI	ATCGAT	2 cut(s)	1018, 1022
BseDI	CCNNGG	4 cut(s)	169, 336, 642, 810
BseGI	GGATG	5 cut(s)	181, 346, 373, 634, 698
BseLI	CCNNNNNNNGG	4 cut(s)	142, 172, 919, 920
BseMII	CTCAG	2 cut(s)	207, 728
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	5 cut(s)	109, 395, 462, 556, 718
BseYI	CCCAGC	1 cut(s)	624
Bsh1236I	CGCG	1 cut(s)	1008
Bsh1285I	CGRYCG	2 cut(s)	10, 1022
BshFI	GGCC	1 cut(s)	372
BshVI	ATCGAT	2 cut(s)	1018, 1022
BsiEI	CGRYCG	2 cut(s)	10, 1022
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	4 cut(s)	142, 172, 919, 920
BsmFI	GGGAC	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	372
Bsp1407I	TGTACA	1 cut(s)	688
Bsp143I	GATC	5 cut(s)	130, 357, 445, 1019, 1023
Bsp1720I	GCTNAGC	1 cut(s)	414
Bsp19I	CCATGG	2 cut(s)	642, 810
BspACI	CCGC	3 cut(s)	390, 478, 1008
BspANI	GGCC	1 cut(s)	372
BspCNI	CTCAG	2 cut(s)	208, 727
BspDI	ATCGAT	2 cut(s)	1018, 1022
BspFNI	CGCG	1 cut(s)	1008
BspLI	GGNNCC	2 cut(s)	373, 447
BspPI	GGATC	2 cut(s)	440, 453
BsrGI	TGTACA	1 cut(s)	688
BssECI	CCNNGG	4 cut(s)	169, 336, 642, 810
BssMI	GATC	5 cut(s)	130, 357, 445, 1019, 1023
BssT1I	CCWWGG	2 cut(s)	642, 810
Bst2UI	CCWGG	2 cut(s)	170, 338
Bst4CI	ACNGT	3 cut(s)	190, 782, 973
BstAUI	TGTACA	1 cut(s)	688
BstBAI	YACGTR	1 cut(s)	58
BstC8I	GCNNGC	2 cut(s)	95, 388
BstDEI	CTNAG	4 cut(s)	216, 414, 495, 714
BstDSI	CCRYGG	2 cut(s)	642, 810
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstF5I	GGATG	5 cut(s)	181, 346, 373, 634, 698
BstFNI	CGCG	1 cut(s)	1008
BstHHI	GCGC	2 cut(s)	427, 1008
BstKTI	GATC	5 cut(s)	133, 360, 448, 1022, 1026
BstMBI	GATC	5 cut(s)	130, 357, 445, 1019, 1023
BstMCI	CGRYCG	2 cut(s)	10, 1022
BstMWI	GCNNNNNNNGC	5 cut(s)	424, 431, 719, 728, 737
BstNI	CCWGG	2 cut(s)	170, 338
BstSCI	CCNGG	2 cut(s)	168, 336
BstUI	CGCG	1 cut(s)	1008
BstV1I	GCAGC	5 cut(s)	109, 395, 462, 556, 718
BstV2I	GAAGAC	1 cut(s)	568
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
Bsu15I	ATCGAT	2 cut(s)	1018, 1022
BsuI	GTATCC	1 cut(s)	662
BsuRI	GGCC	1 cut(s)	372
BsuTUI	ATCGAT	2 cut(s)	1018, 1022
BtgI	CCRYGG	2 cut(s)	642, 810
BtgZI	GCGATG	1 cut(s)	605
BtrI	CACGTC	1 cut(s)	566
BtsCI	GGATG	5 cut(s)	181, 346, 373, 634, 698
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	2 cut(s)	600, 969
Cac8I	GCNNGC	2 cut(s)	95, 388
CfoI	GCGC	2 cut(s)	427, 1008
Cfr13I	GGNCC	1 cut(s)	371
ClaI	ATCGAT	2 cut(s)	1018, 1022
CseI	GACGC	1 cut(s)	231
Csp6I	GTAC	4 cut(s)	454, 689, 820, 974
CviAII	CATG	8 cut(s)	420, 521, 643, 746, 811, 894, 947, 988
CviQI	GTAC	4 cut(s)	454, 689, 820, 974
DdeI	CTNAG	4 cut(s)	216, 414, 495, 714
DpnI	GATC	5 cut(s)	132, 359, 447, 1021, 1025
DpnII	GATC	5 cut(s)	130, 357, 445, 1019, 1023
Eco130I	CCWWGG	2 cut(s)	642, 810
Eco57I	CTGAAG	1 cut(s)	38
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	168, 336
EcoT14I	CCWWGG	2 cut(s)	642, 810
ErhI	CCWWGG	2 cut(s)	642, 810
FaeI	CATG	8 cut(s)	423, 524, 646, 749, 814, 897, 950, 991
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	8 cut(s)	419, 520, 642, 745, 810, 893, 946, 987
Fnu4HI	GCNGC	5 cut(s)	98, 384, 476, 570, 732
FokI	GGATG	5 cut(s)	188, 353, 380, 641, 685
Fsp4HI	GCNGC	5 cut(s)	98, 384, 476, 570, 732
FspBI	CTAG	3 cut(s)	543, 582, 1027
GlaI	GCGC	2 cut(s)	426, 1007
GluI	GCNGC	5 cut(s)	98, 384, 476, 570, 732
GsaI	CCCAGC	1 cut(s)	628
HaeIII	GGCC	1 cut(s)	372
HapII	CCGG	1 cut(s)	6
HgaI	GACGC	1 cut(s)	231
HhaI	GCGC	2 cut(s)	427, 1008
Hin1II	CATG	8 cut(s)	423, 524, 646, 749, 814, 897, 950, 991
Hin6I	GCGC	2 cut(s)	425, 1006
HinP1I	GCGC	2 cut(s)	425, 1006
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HinfI	GANTC	7 cut(s)	65, 71, 346, 353, 483, 797, 898
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	2 cut(s)	848, 901
Hpy166II	GTNNAC	4 cut(s)	246, 839, 909, 969
Hpy188I	TCNGA	5 cut(s)	70, 76, 258, 610, 717
Hpy188III	TCNNGA	3 cut(s)	350, 543, 865
Hpy8I	GTNNAC	4 cut(s)	246, 839, 909, 969
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	3 cut(s)	71, 223, 716
HpyCH4III	ACNGT	3 cut(s)	190, 782, 973
HpyCH4IV	ACGT	2 cut(s)	57, 565
HpyCH4V	TGCA	4 cut(s)	605, 764, 893, 919
HpyF10VI	GCNNNNNNNGC	5 cut(s)	424, 431, 719, 728, 737
HpyF3I	CTNAG	4 cut(s)	216, 414, 495, 714
HpySE526I	ACGT	2 cut(s)	57, 565
Hsp92II	CATG	8 cut(s)	423, 524, 646, 749, 814, 897, 950, 991
HspAI	GCGC	2 cut(s)	425, 1006
Kzo9I	GATC	5 cut(s)	130, 357, 445, 1019, 1023
Lsp1109I	GCAGC	5 cut(s)	109, 395, 462, 556, 718
LweI	GCATC	2 cut(s)	614, 628
MaeI	CTAG	3 cut(s)	543, 582, 1027
MaeII	ACGT	2 cut(s)	57, 565
MaeIII	GTNAC	2 cut(s)	435, 598
MalI	GATC	5 cut(s)	132, 359, 447, 1021, 1025
MboI	GATC	5 cut(s)	130, 357, 445, 1019, 1023
MfeI	CAATTG	1 cut(s)	925
MflI	RGATCY	1 cut(s)	445
MluCI	AATT	5 cut(s)	116, 406, 647, 759, 925
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	8 cut(s)	24, 136, 146, 286, 439, 706, 711, 972
MseI	TTAA	1 cut(s)	458
MspA1I	CMGCKG	1 cut(s)	390
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	2 cut(s)	170, 338
MunI	CAATTG	1 cut(s)	925
Mva1269I	GAATGC	1 cut(s)	18
MvaI	CCWGG	2 cut(s)	170, 338
MvnI	CGCG	1 cut(s)	1008
MwoI	GCNNNNNNNGC	5 cut(s)	424, 431, 719, 728, 737
NcoI	CCATGG	2 cut(s)	642, 810
NdeII	GATC	5 cut(s)	130, 357, 445, 1019, 1023
NlaIII	CATG	8 cut(s)	423, 524, 646, 749, 814, 897, 950, 991
NlaIV	GGNNCC	2 cut(s)	373, 447
NmuCI	GTSAC	1 cut(s)	598
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PctI	GAATGC	1 cut(s)	18
PfeI	GAWTC	6 cut(s)	65, 71, 346, 483, 797, 898
PkrI	GCNGC	5 cut(s)	99, 385, 477, 571, 733
Ple19I	CGATCG	1 cut(s)	1022
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Ppu21I	YACGTR	1 cut(s)	58
PsiI	TTATAA	1 cut(s)	806
Psp6I	CCWGG	2 cut(s)	168, 336
PspFI	CCCAGC	1 cut(s)	624
PspGI	CCWGG	2 cut(s)	168, 336
PspN4I	GGNNCC	2 cut(s)	373, 447
PspPI	GGNCC	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	445
PvuI	CGATCG	1 cut(s)	1022
RsaI	GTAC	4 cut(s)	455, 690, 821, 975
RsaNI	GTAC	4 cut(s)	454, 689, 820, 974
SaqAI	TTAA	1 cut(s)	458
SatI	GCNGC	5 cut(s)	98, 384, 476, 570, 732
Sau3AI	GATC	5 cut(s)	130, 357, 445, 1019, 1023
Sau96I	GGNCC	1 cut(s)	371
ScaI	AGTACT	2 cut(s)	455, 821
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	2 cut(s)	170, 338
SfaNI	GCATC	2 cut(s)	614, 628
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	5 cut(s)	116, 406, 647, 759, 925
SsiI	CCGC	3 cut(s)	390, 478, 1008
SspMI	CTAG	3 cut(s)	543, 582, 1027
StyD4I	CCNGG	2 cut(s)	168, 336
StyI	CCWWGG	2 cut(s)	642, 810
TaaI	ACNGT	3 cut(s)	190, 782, 973
TaiI	ACGT	2 cut(s)	60, 568
TaqI	TCGA	6 cut(s)	10, 356, 682, 866, 1018, 1022
TasI	AATT	5 cut(s)	116, 406, 647, 759, 925
TatI	WGTACW	4 cut(s)	453, 688, 819, 973
TfiI	GAWTC	6 cut(s)	65, 71, 346, 483, 797, 898
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TscAI	CASTG	2 cut(s)	607, 976
TseFI	GTSAC	1 cut(s)	598
TseI	GCWGC	5 cut(s)	97, 383, 475, 569, 731
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	3 cut(s)	192, 210, 963
TspGWI	ACGGA	2 cut(s)	66, 120
TspRI	CASTG	2 cut(s)	607, 976
XagI	CCTNNNNNAGG	1 cut(s)	140
XapI	RAATTY	3 cut(s)	116, 406, 647
XbaI	TCTAGA	1 cut(s)	542
XspI	CTAG	3 cut(s)	543, 582, 1027
ZrmI	AGTACT	2 cut(s)	455, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.