Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007094

Physical Location & Seq

Genomic Coordinates Forward (+)

12986697 .. 12987575

Gene Structure 879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g12090.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGATTGCTAAAGAAAGTTTTGAAGGAACACGAAGAAGAAGACCGACACGTAATAGAATCCGAATCAGAAGGAGAAGAAGAAATCCAGCATTAATTTTTTGCTTTTTTAGTGGATTTAAGAAAATGAAACGAATTATAATTTCAAATGGTGAAATTTTATTGATTTTTGCATTCAATGTGCTGAGCGATCAACAAGCTGTGATGGGTTGGTGTTGGATTCTAACGTTACACTTTAGAGAAAAACACTTCAAACTCAAAATTTTAGAAAAAAAAAAACGAATTGAATTGGAAATGGGAGATAAGCTCTTGAAGAGTTTTTGTATAGAACTTAAAGTTGAGGATGAATCAGAAACTGTTGACGAACCTGTGGTTGTTGTGCCTAAGCTGAAAACGAAGGTCGTTGTAGCTTCAACCAACAATCAAAAATCAAAGAAGAAGAAAAAGAAGAAAAGCAAAAAGGCTTCTTCATCTTCTTCGGGTGCTTCCAATGTCGAAAAGCCTTTGGATGGGATTCTTGAATCAATTTCTTTGGATGCCTCGGAAAAAGCAGCCAGCGGAAAAGGTTGTGAGAATTTGGCTAAGCCATGTGCGCCCTCTGTGCTGCAAGTGGATCCCAAGTATTTAAATGTTAACAATGAGCTGCGTAGAATCTTTGGCTCTAAGAGCAGTTCCAGCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tcf25

Protein Analysis

227

Amino Acids

25.66

Weight (kDa)

10.14

Isoelectric Point (pI)

52.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46900
fragaria_vesca	FvH4_7g18270 FvH4_7g18270
malus_domestica	MD01G1098500.v1.1 MD02G1051800.v1.1 MD07G1165200.v1.1
prunus_persica	Prupe.2G203900_v2.0.a1 Prupe.2G203900_v2.0.a1
pyrus_communis	pycom01g11990 pycom01g12090 pycom01g12230 pycom01g12240 pycom01g12540 pycom07g16040
rosa_chinensis	RchiOBHm_Chr1g0361851
rosa_laevigata	RLG00000027697
rosa_multiflora	Rmu_ssc0000124.1_g000015 Rmu_ssc0000124.1_g000023
rosa_roxburghii	Rroxscaffold_4G00294650
rosa_rugosa	Rorug01G0291900
rosa_samantha	Rh1AG302500 Rh1BG265600 Rh1CG283700 Rh1DG295600
rosa_wichuraiana	Rw1G026800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	137
AciI	CCGC	1 cut(s)	555
AclI	AACGTT	1 cut(s)	224
AclWI	GGATC	2 cut(s)	605, 618
AcsI	RAATTY	3 cut(s)	153, 258, 571
AfiI	CCNNNNNNNGG	1 cut(s)	506
AflIII	ACRYGT	1 cut(s)	47
AgsI	TTSAA	8 cut(s)	23, 144, 175, 250, 284, 310, 411, 518
AluBI	AGCT	5 cut(s)	197, 304, 385, 407, 640
AluI	AGCT	5 cut(s)	197, 304, 385, 407, 640
AlwI	GGATC	2 cut(s)	605, 618
AlwNI	CAGNNNCTG	1 cut(s)	353
ApeKI	GCWGC	3 cut(s)	548, 601, 640
ApoI	RAATTY	3 cut(s)	153, 258, 571
AseI	ATTAAT	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	592
AsuHPI	GGTGA	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	610
BbsI	GAAGAC	1 cut(s)	46
BbvI	GCAGC	3 cut(s)	560, 588, 627
BccI	CCATC	2 cut(s)	196, 500
BisI	GCNGC	3 cut(s)	549, 602, 641
BlpI	GCTNAGC	2 cut(s)	182, 579
BlsI	GCNGC	3 cut(s)	550, 603, 642
BmiI	GGNNCC	1 cut(s)	612
BmsI	GCATC	1 cut(s)	523
BpiI	GAAGAC	1 cut(s)	46
BplI	GAGNNNNNCTC	2 cut(s)	288, 320
Bpu10I	CCTNAGC	1 cut(s)	381
Bpu1102I	GCTNAGC	2 cut(s)	182, 579
BsaAI	YACGTR	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	537
Bsc4I	CCNNNNNNNGG	1 cut(s)	506
BseDI	CCNNGG	1 cut(s)	537
BseGI	GGATG	3 cut(s)	346, 511, 538
BseLI	CCNNNNNNNGG	1 cut(s)	506
BseMII	CTCAG	1 cut(s)	173
BseXI	GCAGC	3 cut(s)	560, 588, 627
BslI	CCNNNNNNNGG	1 cut(s)	506
BsmI	GAATGC	1 cut(s)	170
Bsp143I	GATC	2 cut(s)	187, 610
Bsp1720I	GCTNAGC	2 cut(s)	182, 579
BspACI	CCGC	1 cut(s)	555
BspCNI	CTCAG	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	612
BspPI	GGATC	2 cut(s)	605, 618
BssECI	CCNNGG	1 cut(s)	537
BssMI	GATC	2 cut(s)	187, 610
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	1 cut(s)	305
BstBAI	YACGTR	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	553
BstDEI	CTNAG	4 cut(s)	182, 381, 579, 660
BstF5I	GGATG	3 cut(s)	346, 511, 538
BstHHI	GCGC	1 cut(s)	592
BstKTI	GATC	2 cut(s)	190, 613
BstMBI	GATC	2 cut(s)	187, 610
BstMWI	GCNNNNNNNGC	4 cut(s)	589, 598, 663, 672
BstV1I	GCAGC	3 cut(s)	560, 588, 627
BstV2I	GAAGAC	1 cut(s)	46
BstX2I	RGATCY	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	610
BtsCI	GGATG	3 cut(s)	346, 511, 538
Cac8I	GCNNGC	1 cut(s)	553
CaiI	CAGNNNCTG	1 cut(s)	353
CfoI	GCGC	1 cut(s)	592
CviAII	CATG	1 cut(s)	585
DdeI	CTNAG	4 cut(s)	182, 381, 579, 660
DpnI	GATC	2 cut(s)	189, 612
DpnII	GATC	2 cut(s)	187, 610
DraI	TTTAAA	1 cut(s)	624
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
FaeI	CATG	1 cut(s)	588
FaiI	YATR	3 cut(s)	137, 323, 586
FatI	CATG	1 cut(s)	584
Fnu4HI	GCNGC	3 cut(s)	549, 602, 641
FokI	GGATG	3 cut(s)	353, 518, 545
Fsp4HI	GCNGC	3 cut(s)	549, 602, 641
GlaI	GCGC	1 cut(s)	591
GluI	GCNGC	3 cut(s)	549, 602, 641
HhaI	GCGC	1 cut(s)	592
Hin1II	CATG	1 cut(s)	588
Hin6I	GCGC	1 cut(s)	590
HinP1I	GCGC	1 cut(s)	590
HincII	GTYRAC	2 cut(s)	358, 631
HindII	GTYRAC	2 cut(s)	358, 631
HinfI	GANTC	7 cut(s)	57, 63, 217, 344, 511, 518, 648
HpaI	GTTAAC	1 cut(s)	631
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	2 cut(s)	358, 631
Hpy188I	TCNGA	4 cut(s)	62, 68, 349, 541
Hpy188III	TCNNGA	2 cut(s)	307, 515
Hpy8I	GTNNAC	2 cut(s)	358, 631
HpyAV	CCTTC	3 cut(s)	17, 63, 388
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	2 cut(s)	49, 224
HpyCH4V	TGCA	2 cut(s)	170, 604
HpyF10VI	GCNNNNNNNGC	4 cut(s)	589, 598, 663, 672
HpyF3I	CTNAG	4 cut(s)	182, 381, 579, 660
HpySE526I	ACGT	2 cut(s)	49, 224
Hsp92II	CATG	1 cut(s)	588
HspAI	GCGC	1 cut(s)	590
KspAI	GTTAAC	1 cut(s)	631
Kzo9I	GATC	2 cut(s)	187, 610
LpnPI	CCDG	3 cut(s)	99, 378, 565
Lsp1109I	GCAGC	3 cut(s)	560, 588, 627
LweI	GCATC	1 cut(s)	523
MaeII	ACGT	2 cut(s)	49, 224
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	2 cut(s)	189, 612
MboI	GATC	2 cut(s)	187, 610
MflI	RGATCY	1 cut(s)	610
MluCI	AATT	9 cut(s)	93, 132, 138, 153, 258, 279, 284, 522, 571
MmeI	TCCRAC	1 cut(s)	194
MnlI	CCTC	3 cut(s)	331, 547, 604
MseI	TTAA	5 cut(s)	92, 117, 330, 623, 630
MspA1I	CMGCKG	1 cut(s)	555
Mva1269I	GAATGC	1 cut(s)	170
MwoI	GCNNNNNNNGC	4 cut(s)	589, 598, 663, 672
NdeII	GATC	2 cut(s)	187, 610
NlaIII	CATG	1 cut(s)	588
NlaIV	GGNNCC	1 cut(s)	612
PctI	GAATGC	1 cut(s)	170
PfeI	GAWTC	7 cut(s)	57, 63, 217, 344, 511, 518, 648
PkrI	GCNGC	3 cut(s)	550, 603, 642
Ppu21I	YACGTR	1 cut(s)	50
PshBI	ATTAAT	1 cut(s)	92
PsiI	TTATAA	1 cut(s)	137
Psp1406I	AACGTT	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	612
PstNI	CAGNNNCTG	1 cut(s)	353
PsuI	RGATCY	1 cut(s)	610
SaqAI	TTAA	5 cut(s)	92, 117, 330, 623, 630
SatI	GCNGC	3 cut(s)	549, 602, 641
Sau3AI	GATC	2 cut(s)	187, 610
SfaNI	GCATC	1 cut(s)	523
SmiI	ATTTAAAT	1 cut(s)	624
Sse9I	AATT	9 cut(s)	93, 132, 138, 153, 258, 279, 284, 522, 571
SsiI	CCGC	1 cut(s)	555
SwaI	ATTTAAAT	1 cut(s)	624
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	2 cut(s)	52, 227
TaqI	TCGA	1 cut(s)	492
TaqII	GACCGA	1 cut(s)	58
TasI	AATT	9 cut(s)	93, 132, 138, 153, 258, 279, 284, 522, 571
TfiI	GAWTC	7 cut(s)	57, 63, 217, 344, 511, 518, 648
Tru1I	TTAA	5 cut(s)	92, 117, 330, 623, 630
Tru9I	TTAA	5 cut(s)	92, 117, 330, 623, 630
TseI	GCWGC	3 cut(s)	548, 601, 640
TspDTI	ATGAA	3 cut(s)	140, 357, 456
VspI	ATTAAT	1 cut(s)	92
XapI	RAATTY	3 cut(s)	153, 258, 571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.