Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007094

Physical Location & Seq

Genomic Coordinates Forward (+)

12951921 .. 12953310

Gene Structure 1390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g11990.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGTTCAATGAAAAAGTTATCTTCGAAGTTCATTGCTATTTTTTCACTTTCACTACAAATTGTCTCCCATGCCTAACCTGTTTTTTTTTTTTAATTTTTAAATTAAGGACAAATTTGAAATTAAAAAATTCATTAAAAGGTGGATGGGAATATAAGACATTGAGTGAGCAAAGGAGCACCGAAGTGATGTCGTTTAGTCATCCTGTTTCCTATTGGGATATCCGGAATCCAGTTATCGAATTCGGACTCGAGCTTGAGTTTTTTGGCAATTTGGGTTTTATTTGTTGGTTGGTAATCGAGCTTCGGATTACTAAGGCGATGTCGGGTCGATTGCTGAAGAAAATTTTGAAGGAACACGAAGAAGAAGACCGACACCTCAAAGGAACAAGAAGAAGACGACCAGGTTCACTTTTTAAATTTAATTTTTTGCTTTTTTATTTATTGATTTTTGCATTCAATGTGCTGAGTGATCAACGAGCTGTGATGGGTTGGTGTTGGATTCTAACGTTACACTTTAGAGAAAAACACTTCAAACTCAAAATTTTAGAAAAAAAAACCAAATTGAATTGGAAATGGGAGAGTAAAAATCAGTTAGATAAGCTCTTGAAGAGTTTTTGTATAGAACTTAAAGTTGAGGATGAATCAGAAACTGTTGACGAACCTGTGGTTGTTGTGCCTGAGCTGAAAACGAAGGCCGTTGTAGCTTCAACCAACAATCAAAAATCAAAGAAGAAGAAAAAGAAGAAAAGCAAAGAGGCTTCTTCATCTTCTTCGGGTGCTTCCAATGTCGAAAAGCCTTTGGATGGGATTCTTGAATCAATTTCTTTGGATGCCTCGGAAAAAGCAGCCAGCGGAAAAGGTTGTGAGAATTTGGCTAAGCCATGTGCGCCCTCTGTGCTGCAAGTGGATCCCAAGTATTTAAATGTTGACAATGAGCTGTGTAGAATCTTTGGCTCCAAGAGCAGTTCCAGCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tcf25

Protein Analysis

326

Amino Acids

37.48

Weight (kDa)

9.29

Isoelectric Point (pI)

36.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46900
fragaria_vesca	FvH4_7g18270 FvH4_7g18270
malus_domestica	MD01G1098500.v1.1 MD02G1051800.v1.1 MD07G1165200.v1.1
prunus_persica	Prupe.2G203900_v2.0.a1 Prupe.2G203900_v2.0.a1
pyrus_communis	pycom01g11990 pycom01g12090 pycom01g12230 pycom01g12240 pycom01g12540 pycom07g16040
rosa_chinensis	RchiOBHm_Chr1g0361851
rosa_laevigata	RLG00000027697
rosa_multiflora	Rmu_ssc0000124.1_g000015 Rmu_ssc0000124.1_g000023
rosa_roxburghii	Rroxscaffold_4G00294650
rosa_rugosa	Rorug01G0291900
rosa_samantha	Rh1AG302500 Rh1BG265600 Rh1CG283700 Rh1DG295600
rosa_wichuraiana	Rw1G026800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	222
AciI	CCGC	1 cut(s)	852
AclI	AACGTT	1 cut(s)	506
AclWI	GGATC	2 cut(s)	902, 915
AcsI	RAATTY	7 cut(s)	112, 127, 239, 342, 416, 540, 868
AcuI	CTGAAG	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	803
AgsI	TTSAA	9 cut(s)	7, 118, 349, 457, 532, 565, 607, 708, 815
AjnI	CCWGG	1 cut(s)	400
AleI	CACNNNNGTG	1 cut(s)	182
AluBI	AGCT	7 cut(s)	253, 301, 479, 601, 682, 704, 937
AluI	AGCT	7 cut(s)	253, 301, 479, 601, 682, 704, 937
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	2 cut(s)	902, 915
AlwNI	CAGNNNCTG	1 cut(s)	650
Ama87I	CYCGRG	1 cut(s)	248
Aor13HI	TCCGGA	1 cut(s)	222
AoxI	GGCC	1 cut(s)	693
ApeKI	GCWGC	2 cut(s)	845, 898
ApoI	RAATTY	7 cut(s)	112, 127, 239, 342, 416, 540, 868
AspLEI	GCGC	1 cut(s)	889
AsuII	TTCGAA	1 cut(s)	24
AvaI	CYCGRG	1 cut(s)	248
BamHI	GGATCC	1 cut(s)	907
BarI	GAAGNNNNNNTAC	2 cut(s)	285, 317
BbsI	GAAGAC	2 cut(s)	372, 400
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	2 cut(s)	857, 885
BccI	CCATC	3 cut(s)	138, 478, 797
BceAI	ACGGC	1 cut(s)	680
BciT130I	CCWGG	1 cut(s)	402
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	1 cut(s)	68
BisI	GCNGC	2 cut(s)	846, 899
BlpI	GCTNAGC	1 cut(s)	876
BlsI	GCNGC	2 cut(s)	847, 900
Bme1390I	CCNGG	1 cut(s)	402
BmeT110I	CYCGRG	1 cut(s)	248
BmiI	GGNNCC	2 cut(s)	909, 955
BmrFI	CCNGG	1 cut(s)	402
BmsI	GCATC	1 cut(s)	820
BpiI	GAAGAC	2 cut(s)	372, 400
Bpu10I	CCTNAGC	1 cut(s)	678
Bpu1102I	GCTNAGC	1 cut(s)	876
Bpu14I	TTCGAA	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	834
BsaWI	WCCGGW	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	803
Bse1I	ACTGG	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	31
BseAI	TCCGGA	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	402
BseDI	CCNNGG	1 cut(s)	834
BseGI	GGATG	5 cut(s)	149, 199, 643, 808, 835
BseLI	CCNNNNNNNGG	1 cut(s)	803
BseMI	GCAATG	1 cut(s)	31
BseMII	CTCAG	2 cut(s)	455, 669
BseNI	ACTGG	1 cut(s)	230
BseXI	GCAGC	2 cut(s)	857, 885
BshFI	GGCC	1 cut(s)	695
BsiHKAI	GWGCWC	1 cut(s)	179
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	803
BsmAI	GTCTC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	452
BsnI	GGCC	1 cut(s)	695
BsoBI	CYCGRG	1 cut(s)	248
Bsp119I	TTCGAA	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp13I	TCCGGA	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	469, 907
Bsp1720I	GCTNAGC	1 cut(s)	876
BspACI	CCGC	1 cut(s)	852
BspANI	GGCC	1 cut(s)	695
BspCNI	CTCAG	2 cut(s)	456, 670
BspEI	TCCGGA	1 cut(s)	222
BspLI	GGNNCC	2 cut(s)	909, 955
BspPI	GGATC	2 cut(s)	902, 915
BspT104I	TTCGAA	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	834
BssMI	GATC	2 cut(s)	469, 907
Bst2UI	CCWGG	1 cut(s)	402
Bst4CI	ACNGT	1 cut(s)	652
Bst6I	CTCTTC	1 cut(s)	602
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	850
BstDEI	CTNAG	4 cut(s)	312, 464, 678, 876
BstF5I	GGATG	5 cut(s)	149, 199, 643, 808, 835
BstHHI	GCGC	1 cut(s)	889
BstKTI	GATC	2 cut(s)	472, 910
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	2 cut(s)	469, 907
BstMWI	GCNNNNNNNGC	5 cut(s)	701, 886, 895, 960, 969
BstNI	CCWGG	1 cut(s)	402
BstSCI	CCNGG	1 cut(s)	400
BstV1I	GCAGC	2 cut(s)	857, 885
BstV2I	GAAGAC	2 cut(s)	372, 400
BstX2I	RGATCY	1 cut(s)	907
BstYI	RGATCY	1 cut(s)	907
BsuRI	GGCC	1 cut(s)	695
BtgZI	GCGATG	1 cut(s)	332
BtsCI	GGATG	5 cut(s)	149, 199, 643, 808, 835
Cac8I	GCNNGC	1 cut(s)	850
CaiI	CAGNNNCTG	1 cut(s)	650
CfoI	GCGC	1 cut(s)	889
CsiI	ACCWGGT	1 cut(s)	400
CviAII	CATG	2 cut(s)	69, 882
DdeI	CTNAG	4 cut(s)	312, 464, 678, 876
DpnI	GATC	2 cut(s)	471, 909
DpnII	GATC	2 cut(s)	469, 907
DraI	TTTAAA	3 cut(s)	100, 415, 921
Eam1104I	CTCTTC	1 cut(s)	602
EarI	CTCTTC	1 cut(s)	602
Eco32I	GATATC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	356
Eco88I	CYCGRG	1 cut(s)	248
EcoRI	GAATTC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	400
EcoRV	GATATC	1 cut(s)	220
FaeI	CATG	2 cut(s)	72, 885
FaiI	YATR	4 cut(s)	70, 153, 620, 883
FatI	CATG	2 cut(s)	68, 881
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	2 cut(s)	846, 899
FokI	GGATG	5 cut(s)	156, 186, 650, 815, 842
Fsp4HI	GCNGC	2 cut(s)	846, 899
GlaI	GCGC	1 cut(s)	888
GluI	GCNGC	2 cut(s)	846, 899
HaeIII	GGCC	1 cut(s)	695
HapII	CCGG	1 cut(s)	223
HhaI	GCGC	1 cut(s)	889
Hin1II	CATG	2 cut(s)	72, 885
Hin6I	GCGC	1 cut(s)	887
HinP1I	GCGC	1 cut(s)	887
HincII	GTYRAC	2 cut(s)	655, 928
HindII	GTYRAC	2 cut(s)	655, 928
HinfI	GANTC	7 cut(s)	226, 246, 499, 641, 808, 815, 945
HpaII	CCGG	1 cut(s)	223
Hpy166II	GTNNAC	3 cut(s)	407, 655, 928
Hpy188I	TCNGA	4 cut(s)	245, 306, 646, 838
Hpy188III	TCNNGA	3 cut(s)	223, 604, 812
Hpy8I	GTNNAC	3 cut(s)	407, 655, 928
HpyAV	CCTTC	2 cut(s)	343, 685
HpyCH4III	ACNGT	1 cut(s)	652
HpyCH4IV	ACGT	1 cut(s)	506
HpyCH4V	TGCA	2 cut(s)	452, 901
HpyF10VI	GCNNNNNNNGC	5 cut(s)	701, 886, 895, 960, 969
HpyF3I	CTNAG	4 cut(s)	312, 464, 678, 876
HpySE526I	ACGT	1 cut(s)	506
Hsp92II	CATG	2 cut(s)	72, 885
HspAI	GCGC	1 cut(s)	887
Kpn2I	TCCGGA	1 cut(s)	222
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	469, 907
LmnI	GCTCC	2 cut(s)	174, 959
LpnPI	CCDG	9 cut(s)	91, 216, 236, 243, 387, 414, 675, 690, 862
Lsp1109I	GCAGC	2 cut(s)	857, 885
LweI	GCATC	1 cut(s)	820
MabI	ACCWGGT	1 cut(s)	400
MaeII	ACGT	1 cut(s)	506
MaeIII	GTNAC	1 cut(s)	507
MalI	GATC	2 cut(s)	471, 909
MboI	GATC	2 cut(s)	469, 907
MflI	RGATCY	1 cut(s)	907
MhlI	GDGCHC	1 cut(s)	179
MlyI	GAGTC	1 cut(s)	240
MmeI	TCCRAC	1 cut(s)	476
MnlI	CCTC	5 cut(s)	386, 628, 748, 844, 901
MroI	TCCGGA	1 cut(s)	222
MseI	TTAA	9 cut(s)	92, 99, 104, 122, 134, 414, 420, 627, 920
MslI	CAYNNNNRTG	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	852
MspI	CCGG	1 cut(s)	223
MspR9I	CCNGG	1 cut(s)	402
Mva1269I	GAATGC	1 cut(s)	452
MvaI	CCWGG	1 cut(s)	402
MwoI	GCNNNNNNNGC	5 cut(s)	701, 886, 895, 960, 969
NdeII	GATC	2 cut(s)	469, 907
NlaIII	CATG	2 cut(s)	72, 885
NlaIV	GGNNCC	2 cut(s)	909, 955
NspV	TTCGAA	1 cut(s)	24
OliI	CACNNNNGTG	1 cut(s)	182
PaeR7I	CTCGAG	1 cut(s)	248
PctI	GAATGC	1 cut(s)	452
PfeI	GAWTC	6 cut(s)	226, 499, 641, 808, 815, 945
PkrI	GCNGC	2 cut(s)	847, 900
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
Psp1406I	AACGTT	1 cut(s)	506
Psp6I	CCWGG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	400
PspN4I	GGNNCC	2 cut(s)	909, 955
PspXI	VCTCGAGB	1 cut(s)	248
PstNI	CAGNNNCTG	1 cut(s)	650
PsuI	RGATCY	1 cut(s)	907
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	9 cut(s)	92, 99, 104, 122, 134, 414, 420, 627, 920
SatI	GCNGC	2 cut(s)	846, 899
Sau3AI	GATC	2 cut(s)	469, 907
SchI	GAGTC	1 cut(s)	240
ScrFI	CCNGG	1 cut(s)	402
SduI	GDGCHC	1 cut(s)	179
SexAI	ACCWGGT	1 cut(s)	400
SfaNI	GCATC	1 cut(s)	820
Sfr274I	CTCGAG	1 cut(s)	248
SfuI	TTCGAA	1 cut(s)	24
SlaI	CTCGAG	1 cut(s)	248
SmiI	ATTTAAAT	1 cut(s)	921
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	2 cut(s)	248, 254
SmoI	CTYRAG	2 cut(s)	248, 254
SsiI	CCGC	1 cut(s)	852
StyD4I	CCNGG	1 cut(s)	400
SwaI	ATTTAAAT	1 cut(s)	921
TaaI	ACNGT	1 cut(s)	652
TaiI	ACGT	1 cut(s)	509
TaqI	TCGA	6 cut(s)	24, 237, 249, 297, 328, 789
TaqII	GACCGA	1 cut(s)	384
TfiI	GAWTC	6 cut(s)	226, 499, 641, 808, 815, 945
Tru1I	TTAA	9 cut(s)	92, 99, 104, 122, 134, 414, 420, 627, 920
Tru9I	TTAA	9 cut(s)	92, 99, 104, 122, 134, 414, 420, 627, 920
TseI	GCWGC	2 cut(s)	845, 898
TspDTI	ATGAA	5 cut(s)	20, 24, 120, 654, 753
XapI	RAATTY	7 cut(s)	112, 127, 239, 342, 416, 540, 868
XhoI	CTCGAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.