Rw1G026800

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0007094
Physical Location & Seq
Forward (+)
54036824 .. 54040446
3623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G026800.1

Sequence Viewer

Length: 1872 bp
ATGTCTGCTCGGTATCTGAAGAAAGTGTTGAAGGAAGAACAAGAGGAGCGACAATTGGAATCAGACCACGAAGAAGAAGAAGACGACGACCACCGCCAGCTCAACGGCAAAGCAAAGATCAACCCTTTCGACCTCCTCAACGACGACGACAACGACCCCCAGGAGGATGAGTCAGAAACTGCTGTTGATGAACCCTCGAGTGTGGTGAAGCCTAGTGCTGATGTGGTTTCGACATCCAGTCAAAAATCCAAGAAGAAGAAGAAGAAGAAAGGCAAAGAGGGCCCTTCTTCTAATGCAGCTGCACCGAGAGTTAAAAAGTCGCCGGATGAGGTTCTGGAAGAATTCTATGAGTATGCGCATGAAAGACAAGCCGAGACGAGGGCTAGTGGTGATGCGGTTAAGCATTCGTATGAAAAGTATGTGCCCTTCATATTGCAAGTGGATCCCAAGTACTTGAATGCTGACAATGAGATGCGAAGAATCTTTGGGGCTAAGGTGGTCAAGTCGTTTGAGAAGAATCAACAGAGTGGTAGCTCTAGAATGGCGCGTGGTGGAAGACGCGGCGCGGTTCATAGGAAGTCTTTCCTTGTCACTCCGTTGGAGCATTGGCCTCGCTGGGACGGTGCTATGAACATGGAACTCCTTCACTCCCCCAATGGATACTATGATTACCGATATACCTATTCATCAGCCTACCATCAAGCTCAGAGTTCATTTGAATCTGCCAAAGCTATACATGATCTCAATGCCATTGCAAGTGTTTTATTATACTATCCTTACCATTTGGATTCGCTACTAACCATGGCAGAGTACTTTAAGTTTGTGGGTGAGCATCAAATGTCAGCAGATGCTATCTCGAAGTGCTTATATGCTTTGGAATGTGCATGGTCTCCAATGTTCACCCCCTTTAAGGGTGATTGCCAAGTGAAATACAGCCATGAAGCAAACAAACCTCTGTTCGTTGCACTTTTTACTCACATGAAAAGTATGGACAGACGTGGCTGTCATCGATCTGCTTTAGAAGTTTGCAAGTTTTTACTGTCACTAGATACTGACGATCCAATGGGGGCCATGTTCTGTATTGACTATTTTGCGGTGAGGGCAGAGGAGTATGCATGGCTAGAACGTTTCTCTGAAGAATATAAAAGTGATAACACCCTATGGTTGTTTCCAAATTTTTCATATTCCCTTGCCGTATGCCGATTGTATCTTGAGAAAGCAGAATCTTCCAAAGATCCAGCTATGGAAACCACCAAGGCTACTTCGACTGATCTTATGAAGCAGGCATTGATGCTTCATCCCACAGTCCTCAAGAAACTAGTGGCAAAAGTACCTTTGAAGGAACGGGTGTGGACGGAAATACTCAAAAATGCATTCTTCCAAGCAGATGAAGTAGGAATCCCATCCTTGGACCACCTGATTAACATATACGTTGAGAGTAATCATATTATATGGAGGCTTCCAGAATTGCAGAAATTGCTGCGGGAAGGAGCACAGCTGGTGATCGAGACTCTAAGACAGAATAGTAGCGAAAAGAATGATTGGGCATGTGTGAGAAAAGAAGCATTCTCATCTGACAAGAATGAGTATTCCCACTTGTTGGTTTCAGACTTCTCTTATACATTGCCTGCTGCCCCACCTGAAAATTTGCAACATTTTATGGCCAATGCAAGGATGGAGGATGTTGTGCATAATGAGCAGCATCTTGTCAATCTAAATGAGGGTGGCCATGCTCCCCGTGATGTTGCAAATCGAAATCCATTAGCGGTCTTGTTTGAGTCGGTGTTACCATGGGTTCATTATGGGGAAGGAGCGTTTGTTGAGGAGGAAGACCAACAAAATGGCCATGGTCCGGGCAATCAAGAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tcf25

Protein Analysis

623

Amino Acids

71.38

Weight (kDa)

5.62

Isoelectric Point (pI)

45.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tcf25 PF04910 224 - 548 1.1e-68 Transcriptional repressor TCF25
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1002
Acc16I TGCGCA 1 cut(s) 357
AccB7I CCANNNNNTGG 1 cut(s) 1600
AccII CGCG 3 cut(s) 547, 561, 566
AciI CCGC 7 cut(s) 94, 395, 561, 566, 1094, 1483, 1766
AclI AACGTT 1 cut(s) 1126
AclWI GGATC 4 cut(s) 437, 450, 1052, 1229
AcoI YGGCCR 3 cut(s) 1662, 1726, 1843
AcsI RAATTY 3 cut(s) 341, 1174, 1645
AcuI CTGAAG 2 cut(s) 38, 1155
AfaI GTAC 3 cut(s) 452, 812, 1332
AfiI CCNNNNNNNGG 8 cut(s) 163, 378, 910, 911, 1408, 1600, 1671, 1852
AgsI TTSAA 4 cut(s) 31, 457, 719, 1339
AhdI GACNNNNNGTC 1 cut(s) 237
AhlI ACTAGT 1 cut(s) 1318
AjiI CACGTC 1 cut(s) 998
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 7 cut(s) 100, 299, 534, 704, 731, 1241, 1498
AluI AGCT 7 cut(s) 100, 299, 534, 704, 731, 1241, 1498
Alw21I GWGCWC 1 cut(s) 1495
Alw26I GTCTC 3 cut(s) 368, 894, 1502
AlwI GGATC 4 cut(s) 437, 450, 1052, 1229
AlwNI CAGNNNCTG 1 cut(s) 179
Ama87I CYCGRG 1 cut(s) 196
AoxI GGCC 6 cut(s) 280, 608, 1068, 1662, 1726, 1843
ApaI GGGCCC 1 cut(s) 284
ApeKI GCWGC 5 cut(s) 296, 299, 1480, 1631, 1699
ApoI RAATTY 3 cut(s) 341, 1174, 1645
Asp700I GAANNNNTTC 2 cut(s) 581, 642
AspLEI GCGC 3 cut(s) 358, 547, 566
AspS9I GGNCC 5 cut(s) 280, 281, 1068, 1411, 1850
AsuC2I CCSGG 1 cut(s) 1854
AsuHPI GGTGA 7 cut(s) 217, 401, 839, 892, 926, 1108, 1513
AvaI CYCGRG 1 cut(s) 196
AvaII GGWCC 2 cut(s) 1411, 1850
BaeGI GKGCMC 2 cut(s) 284, 426
BalI TGGCCA 3 cut(s) 1664, 1728, 1845
BamHI GGATCC 1 cut(s) 442
BanII GRGCYC 1 cut(s) 284
BarI GAAGNNNNNNTAC 2 cut(s) 410, 442
BbsI GAAGAC 3 cut(s) 87, 562, 1836
Bbv12I GWGCWC 1 cut(s) 1495
BbvI GCAGC 5 cut(s) 286, 308, 1467, 1618, 1711
BccI CCATC 3 cut(s) 705, 1411, 1669
BceAI ACGGC 2 cut(s) 121, 1178
BcgI CGANNNNNNTGC 2 cut(s) 593, 627
BciT130I CCWGG 1 cut(s) 161
BciVI GTATCC 1 cut(s) 653
BcnI CCSGG 1 cut(s) 1854
BcoDI GTCTC 3 cut(s) 368, 894, 1502
BcuI ACTAGT 1 cut(s) 1318
BfaI CTAG 6 cut(s) 213, 384, 537, 1046, 1121, 1319
BfuI GTATCC 1 cut(s) 653
BisI GCNGC 6 cut(s) 297, 300, 562, 1481, 1632, 1700
BlsI GCNGC 6 cut(s) 298, 301, 563, 1482, 1633, 1701
BmcAI AGTACT 2 cut(s) 452, 812
Bme1390I CCNGG 2 cut(s) 161, 1854
Bme18I GGWCC 2 cut(s) 1411, 1850
BmeRI GACNNNNNGTC 1 cut(s) 237
BmeT110I CYCGRG 1 cut(s) 196
BmgBI CACGTC 1 cut(s) 998
BmgT120I GGNCC 5 cut(s) 280, 281, 1068, 1411, 1850
BmiI GGNNCC 3 cut(s) 282, 444, 1069
BmrFI CCNGG 2 cut(s) 161, 1854
BmsI GCATC 6 cut(s) 382, 462, 838, 841, 1281, 1711
BpiI GAAGAC 3 cut(s) 87, 562, 1836
Bpu10I CCTNAGC 1 cut(s) 492
BpuEI CTTGAG 2 cut(s) 1232, 1295
BpuMI CCSGG 1 cut(s) 1854
Bsa29I ATCGAT 1 cut(s) 1009
BsaI GGTCTC 1 cut(s) 894
BsaJI CCNNGG 6 cut(s) 159, 801, 1254, 1407, 1790, 1846
BsaXI ACNNNNNCTCC 4 cut(s) 155, 185, 1803, 1833
Bsc4I CCNNNNNNNGG 8 cut(s) 163, 378, 910, 911, 1408, 1600, 1671, 1852
Bse1I ACTGG 1 cut(s) 237
Bse3DI GCAATG 2 cut(s) 750, 1622
BseBI CCWGG 1 cut(s) 161
BseCI ATCGAT 1 cut(s) 1009
BseDI CCNNGG 6 cut(s) 159, 801, 1254, 1407, 1790, 1846
BseGI GGATG 7 cut(s) 172, 233, 331, 1297, 1403, 1680, 1687
BseLI CCNNNNNNNGG 8 cut(s) 163, 378, 910, 911, 1408, 1600, 1671, 1852
BseMI GCAATG 2 cut(s) 750, 1622
BseMII CTCAG 1 cut(s) 719
BseNI ACTGG 1 cut(s) 237
BseRI GAGGAG 4 cut(s) 59, 125, 1121, 1838
BseSI GKGCMC 2 cut(s) 284, 426
BseXI GCAGC 5 cut(s) 286, 308, 1467, 1618, 1711
BseYI CCCAGC 1 cut(s) 615
BsgI GTGCAG 1 cut(s) 285
Bsh1236I CGCG 3 cut(s) 547, 561, 566
BshFI GGCC 6 cut(s) 282, 610, 1070, 1664, 1728, 1845
BshVI ATCGAT 1 cut(s) 1009
BsiHKAI GWGCWC 1 cut(s) 1495
BsiHKCI CYCGRG 1 cut(s) 196
BsiSI CCGG 2 cut(s) 323, 1853
BslFI GGGAC 1 cut(s) 632
BslI CCNNNNNNNGG 8 cut(s) 163, 378, 910, 911, 1408, 1600, 1671, 1852
BsmAI GTCTC 3 cut(s) 368, 894, 1502
BsmBI CGTCTC 1 cut(s) 368
BsmFI GGGAC 1 cut(s) 632
BsmI GAATGC 4 cut(s) 403, 463, 1373, 1565
BsnI GGCC 6 cut(s) 282, 610, 1070, 1664, 1728, 1845
Bso31I GGTCTC 1 cut(s) 894
BsoBI CYCGRG 1 cut(s) 196
Bsp120I GGGCCC 1 cut(s) 280
Bsp1286I GDGCHC 3 cut(s) 284, 426, 1495
Bsp143I GATC 8 cut(s) 117, 442, 739, 1010, 1057, 1234, 1270, 1503
Bsp19I CCATGG 3 cut(s) 801, 1790, 1846
BspACI CCGC 7 cut(s) 94, 395, 561, 566, 1094, 1483, 1766
BspANI GGCC 6 cut(s) 282, 610, 1070, 1664, 1728, 1845
BspCNI CTCAG 1 cut(s) 718
BspDI ATCGAT 1 cut(s) 1009
BspFNI CGCG 3 cut(s) 547, 561, 566
BspLI GGNNCC 3 cut(s) 282, 444, 1069
BspPI GGATC 4 cut(s) 437, 450, 1052, 1229
BspTNI GGTCTC 1 cut(s) 894
BsrDI GCAATG 2 cut(s) 750, 1622
BsrI ACTGG 1 cut(s) 237
BssECI CCNNGG 6 cut(s) 159, 801, 1254, 1407, 1790, 1846
BssMI GATC 8 cut(s) 117, 442, 739, 1010, 1057, 1234, 1270, 1503
BssT1I CCWWGG 5 cut(s) 801, 1254, 1407, 1790, 1846
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 3 cut(s) 623, 1041, 1306
BstAPI GCANNNNNTGC 1 cut(s) 1477
BstC8I GCNNGC 3 cut(s) 98, 1284, 1629
BstDEI CTNAG 3 cut(s) 492, 705, 1514
BstDSI CCRYGG 3 cut(s) 801, 1790, 1846
BstF5I GGATG 7 cut(s) 172, 233, 331, 1297, 1403, 1680, 1687
BstFNI CGCG 3 cut(s) 547, 561, 566
BstHHI GCGC 3 cut(s) 358, 547, 566
BstKTI GATC 8 cut(s) 120, 445, 742, 1013, 1060, 1237, 1273, 1506
BstMAI GTCTC 3 cut(s) 368, 894, 1502
BstMBI GATC 8 cut(s) 117, 442, 739, 1010, 1057, 1234, 1270, 1503
BstMWI GCNNNNNNNGC 4 cut(s) 279, 1100, 1477, 1696
BstNI CCWGG 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 1551
BstSCI CCNGG 2 cut(s) 159, 1852
BstSLI GKGCMC 2 cut(s) 284, 426
BstUI CGCG 3 cut(s) 547, 561, 566
BstV1I GCAGC 5 cut(s) 286, 308, 1467, 1618, 1711
BstV2I GAAGAC 3 cut(s) 87, 562, 1836
BstX2I RGATCY 2 cut(s) 442, 1234
BstXI CCANNNNNNTGG 1 cut(s) 1841
BstYI RGATCY 2 cut(s) 442, 1234
Bsu15I ATCGAT 1 cut(s) 1009
BsuI GTATCC 1 cut(s) 653
BsuRI GGCC 6 cut(s) 282, 610, 1070, 1664, 1728, 1845
BsuTUI ATCGAT 1 cut(s) 1009
BtgI CCRYGG 3 cut(s) 801, 1790, 1846
BtrI CACGTC 1 cut(s) 998
BtsCI GGATG 7 cut(s) 172, 233, 331, 1297, 1403, 1680, 1687
Cac8I GCNNGC 3 cut(s) 98, 1284, 1629
CaiI CAGNNNCTG 1 cut(s) 179
CfoI GCGC 3 cut(s) 358, 547, 566
Cfr13I GGNCC 5 cut(s) 280, 281, 1068, 1411, 1850
ClaI ATCGAT 1 cut(s) 1009
CseI GACGC 1 cut(s) 567
Csp6I GTAC 3 cut(s) 451, 811, 1331
CviQI GTAC 3 cut(s) 451, 811, 1331
DdeI CTNAG 3 cut(s) 492, 705, 1514
DpnI GATC 8 cut(s) 119, 444, 741, 1012, 1059, 1236, 1272, 1505
DpnII GATC 8 cut(s) 117, 442, 739, 1010, 1057, 1234, 1270, 1503
DrdI GACNNNNNNGTC 1 cut(s) 1002
DriI GACNNNNNGTC 1 cut(s) 237
DseDI GACNNNNNNGTC 1 cut(s) 1002
EaeI YGGCCR 3 cut(s) 1662, 1726, 1843
Eam1105I GACNNNNNGTC 1 cut(s) 237
Eco130I CCWWGG 5 cut(s) 801, 1254, 1407, 1790, 1846
Eco24I GRGCYC 1 cut(s) 284
Eco31I GGTCTC 1 cut(s) 894
Eco47I GGWCC 2 cut(s) 1411, 1850
Eco57I CTGAAG 2 cut(s) 38, 1155
Eco88I CYCGRG 1 cut(s) 196
EcoO109I RGGNCCY 2 cut(s) 280, 281
EcoRI GAATTC 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 159
EcoT14I CCWWGG 5 cut(s) 801, 1254, 1407, 1790, 1846
EcoT22I ATGCAT 2 cut(s) 1117, 1375
EcoT38I GRGCYC 1 cut(s) 284
ErhI CCWWGG 5 cut(s) 801, 1254, 1407, 1790, 1846
Esp3I CGTCTC 1 cut(s) 368
FaqI GGGAC 1 cut(s) 632
FauI CCCGC 1 cut(s) 1476
Fnu4HI GCNGC 6 cut(s) 297, 300, 562, 1481, 1632, 1700
FokI GGATG 7 cut(s) 179, 220, 338, 1284, 1390, 1687, 1694
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 6 cut(s) 297, 300, 562, 1481, 1632, 1700
FspAI RTGCGCAY 1 cut(s) 357
FspBI CTAG 6 cut(s) 213, 384, 537, 1046, 1121, 1319
FspI TGCGCA 1 cut(s) 357
GlaI GCGC 3 cut(s) 357, 546, 565
GluI GCNGC 6 cut(s) 297, 300, 562, 1481, 1632, 1700
GsaI CCCAGC 1 cut(s) 619
HaeIII GGCC 6 cut(s) 282, 610, 1070, 1664, 1728, 1845
HapII CCGG 2 cut(s) 323, 1853
HgaI GACGC 1 cut(s) 567
HhaI GCGC 3 cut(s) 358, 547, 566
Hin6I GCGC 3 cut(s) 356, 545, 564
HinP1I GCGC 3 cut(s) 356, 545, 564
HpaII CCGG 2 cut(s) 323, 1853
HphI GGTGA 7 cut(s) 217, 401, 839, 892, 926, 1108, 1513
Hpy166II GTNNAC 2 cut(s) 900, 1353
Hpy188I TCNGA 7 cut(s) 18, 64, 175, 708, 1135, 1576, 1609
Hpy188III TCNNGA 8 cut(s) 335, 537, 856, 1211, 1312, 1463, 1507, 1862
Hpy8I GTNNAC 2 cut(s) 900, 1353
Hpy99I CGWCG 3 cut(s) 89, 146, 149
HpyAV CCTTC 7 cut(s) 25, 294, 436, 653, 1333, 1481, 1802
HpyCH4III ACNGT 3 cut(s) 623, 1041, 1306
HpyCH4IV ACGT 3 cut(s) 997, 1126, 1431
HpyF10VI GCNNNNNNNGC 4 cut(s) 279, 1100, 1477, 1696
HpyF3I CTNAG 3 cut(s) 492, 705, 1514
HpySE526I ACGT 3 cut(s) 997, 1126, 1431
HspAI GCGC 3 cut(s) 356, 545, 564
Kzo9I GATC 8 cut(s) 117, 442, 739, 1010, 1057, 1234, 1270, 1503
LmnI GCTCC 5 cut(s) 46, 601, 1490, 1738, 1811
Lsp1109I GCAGC 5 cut(s) 286, 308, 1467, 1618, 1711
LweI GCATC 6 cut(s) 382, 462, 838, 841, 1281, 1711
MaeI CTAG 6 cut(s) 213, 384, 537, 1046, 1121, 1319
MaeII ACGT 3 cut(s) 997, 1126, 1431
MaeIII GTNAC 3 cut(s) 589, 1041, 1785
MalI GATC 8 cut(s) 119, 444, 741, 1012, 1059, 1236, 1272, 1505
MboI GATC 8 cut(s) 117, 442, 739, 1010, 1057, 1234, 1270, 1503
MfeI CAATTG 1 cut(s) 53
MflI RGATCY 2 cut(s) 442, 1234
MhlI GDGCHC 3 cut(s) 284, 426, 1495
MlsI TGGCCA 3 cut(s) 1664, 1728, 1845
MluCI AATT 6 cut(s) 53, 341, 1174, 1466, 1475, 1645
MluNI TGGCCA 3 cut(s) 1664, 1728, 1845
MlyI GAGTC 3 cut(s) 179, 1504, 1787
MmeI TCCRAC 1 cut(s) 579
Mox20I TGGCCA 3 cut(s) 1664, 1728, 1845
Mph1103I ATGCAT 2 cut(s) 1117, 1375
MroXI GAANNNNTTC 2 cut(s) 581, 642
MscI TGGCCA 3 cut(s) 1664, 1728, 1845
MseI TTAA 5 cut(s) 312, 399, 816, 909, 1422
MslI CAYNNNNRTG 1 cut(s) 408
Msp20I TGGCCA 3 cut(s) 1664, 1728, 1845
MspA1I CMGCKG 2 cut(s) 299, 1498
MspI CCGG 2 cut(s) 323, 1853
MspR9I CCNGG 2 cut(s) 161, 1854
MunI CAATTG 1 cut(s) 53
Mva1269I GAATGC 4 cut(s) 403, 463, 1373, 1565
MvaI CCWGG 1 cut(s) 161
MvnI CGCG 3 cut(s) 547, 561, 566
MwoI GCNNNNNNNGC 4 cut(s) 279, 1100, 1477, 1696
NciI CCSGG 1 cut(s) 1854
NcoI CCATGG 3 cut(s) 801, 1790, 1846
NdeII GATC 8 cut(s) 117, 442, 739, 1010, 1057, 1234, 1270, 1503
NlaIV GGNNCC 3 cut(s) 282, 444, 1069
NmeAIII GCCGAG 1 cut(s) 397
NmuCI GTSAC 2 cut(s) 589, 1041
NsbI TGCGCA 1 cut(s) 357
NsiI ATGCAT 2 cut(s) 1117, 1375
NspI RCATGY 1 cut(s) 1551
PaeR7I CTCGAG 1 cut(s) 196
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PctI GAATGC 4 cut(s) 403, 463, 1373, 1565
PdmI GAANNNNTTC 2 cut(s) 581, 642
PfeI GAWTC 7 cut(s) 59, 480, 517, 719, 788, 1223, 1398
PflMI CCANNNNNTGG 1 cut(s) 1600
PkrI GCNGC 6 cut(s) 298, 301, 563, 1482, 1633, 1701
PleI GAGTC 3 cut(s) 178, 1504, 1786
PpsI GAGTC 3 cut(s) 178, 1504, 1786
Psp1406I AACGTT 1 cut(s) 1126
Psp6I CCWGG 1 cut(s) 159
PspFI CCCAGC 1 cut(s) 615
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 3 cut(s) 282, 444, 1069
PspOMI GGGCCC 1 cut(s) 280
PspPI GGNCC 5 cut(s) 280, 281, 1068, 1411, 1850
PspXI VCTCGAGB 1 cut(s) 196
PstNI CAGNNNCTG 1 cut(s) 179
PsuI RGATCY 2 cut(s) 442, 1234
PvuII CAGCTG 2 cut(s) 299, 1498
RsaI GTAC 3 cut(s) 452, 812, 1332
RsaNI GTAC 3 cut(s) 451, 811, 1331
RseI CAYNNNNRTG 1 cut(s) 408
SaqAI TTAA 5 cut(s) 312, 399, 816, 909, 1422
SatI GCNGC 6 cut(s) 297, 300, 562, 1481, 1632, 1700
Sau3AI GATC 8 cut(s) 117, 442, 739, 1010, 1057, 1234, 1270, 1503
Sau96I GGNCC 5 cut(s) 280, 281, 1068, 1411, 1850
ScaI AGTACT 2 cut(s) 452, 812
SchI GAGTC 3 cut(s) 179, 1504, 1787
ScrFI CCNGG 2 cut(s) 161, 1854
SduI GDGCHC 3 cut(s) 284, 426, 1495
SfaNI GCATC 6 cut(s) 382, 462, 838, 841, 1281, 1711
Sfr274I CTCGAG 1 cut(s) 196
SinI GGWCC 2 cut(s) 1411, 1850
SlaI CTCGAG 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 408
SmlI CTYRAG 3 cut(s) 196, 1211, 1310
SmoI CTYRAG 3 cut(s) 196, 1211, 1310
SpeI ACTAGT 1 cut(s) 1318
Sse9I AATT 6 cut(s) 53, 341, 1174, 1466, 1475, 1645
SsiI CCGC 7 cut(s) 94, 395, 561, 566, 1094, 1483, 1766
SspMI CTAG 6 cut(s) 213, 384, 537, 1046, 1121, 1319
StyD4I CCNGG 2 cut(s) 159, 1852
StyI CCWWGG 5 cut(s) 801, 1254, 1407, 1790, 1846
TaaI ACNGT 3 cut(s) 623, 1041, 1306
TaiI ACGT 3 cut(s) 1000, 1129, 1434
TaqI TCGA 8 cut(s) 129, 197, 230, 857, 1009, 1265, 1506, 1753
TasI AATT 6 cut(s) 53, 341, 1174, 1466, 1475, 1645
TatI WGTACW 2 cut(s) 450, 810
TauI GCSGC 1 cut(s) 564
TfiI GAWTC 7 cut(s) 59, 480, 517, 719, 788, 1223, 1398
Tru1I TTAA 5 cut(s) 312, 399, 816, 909, 1422
Tru9I TTAA 5 cut(s) 312, 399, 816, 909, 1422
TseFI GTSAC 2 cut(s) 589, 1041
TseI GCWGC 5 cut(s) 296, 299, 1480, 1631, 1699
Tsp45I GTSAC 2 cut(s) 589, 1041
TspGWI ACGGA 2 cut(s) 585, 1370
Van91I CCANNNNNTGG 1 cut(s) 1600
VpaK11BI GGWCC 2 cut(s) 1411, 1850
XapI RAATTY 3 cut(s) 341, 1174, 1645
XbaI TCTAGA 1 cut(s) 536
XceI RCATGY 1 cut(s) 1551
XcmI CCANNNNNNNNNTGG 1 cut(s) 1672
XhoI CTCGAG 1 cut(s) 196
XmnI GAANNNNTTC 2 cut(s) 581, 642
XspI CTAG 6 cut(s) 213, 384, 537, 1046, 1121, 1319
ZrmI AGTACT 2 cut(s) 452, 812
Zsp2I ATGCAT 2 cut(s) 1117, 1375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.