pycom01g12240

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0007094
Physical Location & Seq
Forward (+)
13036637 .. 13038508
1872 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g12240.3

Sequence Viewer

Length: 690 bp
ATGTATTTGAATGCTGGCAATGAGCTGCGGAGAATCTTTGGCTCTAAGGTGGTAAAGTCCTTTGAGAAACATGAGCGAAGTGGTGGCAGTTGTAGACTGGTGCATGGTGGAAGACGTGCTGCTCATATTCCTAGAAAAACCGTACTTGTCACTGCATCAGAGCATTGGCATCGCTGGGATGGCTCTTTTTCCATGGAATTTCTTCAAGTGATTGATGTATATCACCACTTTCGATATGTACATTCCTCATCCTACCTTCAAGCTCAGAGGGCATTTGAAGCTGCCAAAGCTATACATGATATCAATGGAATTGCAAGTATTTTGTTATACAATCCTTATCATTTGGAATCGCTTATAACCATGGCAGAGTACTATAAGTTTTCAGGATTCTTTCGACTCGGGGAGAGAGGGGAGGGGATATCATGGCTGACAGATTGGAGAGAGACGATGACTCCAATTTTTCACTCGGAGACAGCTGGGTGTCGCTGTGTCGAGCGGAGAGAAAGGGGGACAGAGCAACTACAGAGCAGGGAGACACAGGGCCTGCATTTCAGCTTTGACTCGGGGAGAGAGGGGAAGGGGACATCACGGCTGGCGAATTTGAGAGAGACAGTGGCTCCCATTTTTGACTCGGAGACAGCTGGGTGTCGCTGTGGCGAGGGAAGAGGAAGGGGACAGAGTGAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tcf25

Protein Analysis

230

Amino Acids

26.22

Weight (kDa)

8.84

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 356
AccBSI CCGCTC 1 cut(s) 496
AccI GTMKAC 1 cut(s) 94
AciI CCGC 2 cut(s) 28, 496
AcsI RAATTY 2 cut(s) 197, 598
AfaI GTAC 3 cut(s) 144, 240, 371
AgsI TTSAA 4 cut(s) 10, 206, 260, 278
AjiI CACGTC 1 cut(s) 116
AluBI AGCT 7 cut(s) 25, 263, 281, 290, 476, 555, 641
AluI AGCT 7 cut(s) 25, 263, 281, 290, 476, 555, 641
Alw26I GTCTC 5 cut(s) 437, 464, 527, 602, 629
AlwNI CAGNNNCTG 1 cut(s) 544
Ama87I CYCGRG 2 cut(s) 398, 562
AoxI GGCC 1 cut(s) 541
ApeKI GCWGC 3 cut(s) 25, 119, 281
ApoI RAATTY 2 cut(s) 197, 598
Asp700I GAANNNNTTC 1 cut(s) 201
AspS9I GGNCC 1 cut(s) 541
AsuHPI GGTGA 1 cut(s) 215
AvaI CYCGRG 2 cut(s) 398, 562
BbsI GAAGAC 1 cut(s) 118
BbvI GCAGC 3 cut(s) 12, 106, 268
BccI CCATC 1 cut(s) 173
BceAI ACGGC 1 cut(s) 605
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BcoDI GTCTC 5 cut(s) 437, 464, 527, 602, 629
BfaI CTAG 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 521
BisI GCNGC 3 cut(s) 26, 120, 282
BlsI GCNGC 3 cut(s) 27, 121, 283
BmcAI AGTACT 1 cut(s) 371
BmeT110I CYCGRG 2 cut(s) 398, 562
BmgBI CACGTC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 541
BmiI GGNNCC 1 cut(s) 618
BmsI GCATC 2 cut(s) 164, 178
BpiI GAAGAC 1 cut(s) 118
BsaBI GATNNNNATC 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 192, 360
BsaXI ACNNNNNCTCC 4 cut(s) 436, 466, 601, 631
Bse1I ACTGG 1 cut(s) 102
Bse3DI GCAATG 1 cut(s) 25
Bse8I GATNNNNATC 1 cut(s) 219
BseDI CCNNGG 2 cut(s) 192, 360
BseGI GGATG 2 cut(s) 184, 248
BseJI GATNNNNATC 1 cut(s) 219
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 1 cut(s) 102
BseXI GCAGC 3 cut(s) 12, 106, 268
BseYI CCCAGC 3 cut(s) 174, 476, 641
BshFI GGCC 1 cut(s) 543
BsiHKCI CYCGRG 2 cut(s) 398, 562
BslFI GGGAC 2 cut(s) 523, 595
BsmAI GTCTC 5 cut(s) 437, 464, 527, 602, 629
BsmBI CGTCTC 1 cut(s) 437
BsmFI GGGAC 2 cut(s) 523, 595
BsmI GAATGC 1 cut(s) 16
BsnI GGCC 1 cut(s) 543
BsoBI CYCGRG 2 cut(s) 398, 562
Bsp1407I TGTACA 1 cut(s) 238
Bsp19I CCATGG 2 cut(s) 192, 360
BspACI CCGC 2 cut(s) 28, 496
BspANI GGCC 1 cut(s) 543
BspCNI CTCAG 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 618
BsrBI CCGCTC 1 cut(s) 496
BsrDI GCAATG 1 cut(s) 25
BsrGI TGTACA 1 cut(s) 238
BsrI ACTGG 1 cut(s) 102
BssECI CCNNGG 2 cut(s) 192, 360
BssT1I CCWWGG 2 cut(s) 192, 360
Bst4CI ACNGT 2 cut(s) 142, 613
Bst6I CTCTTC 1 cut(s) 658
BstAUI TGTACA 1 cut(s) 238
BstC8I GCNNGC 3 cut(s) 16, 545, 594
BstDEI CTNAG 2 cut(s) 45, 264
BstDSI CCRYGG 2 cut(s) 192, 360
BstF5I GGATG 2 cut(s) 184, 248
BstMAI GTCTC 5 cut(s) 437, 464, 527, 602, 629
BstMWI GCNNNNNNNGC 4 cut(s) 180, 269, 278, 287
BstSFI CTRYAG 1 cut(s) 521
BstV1I GCAGC 3 cut(s) 12, 106, 268
BstV2I GAAGAC 1 cut(s) 118
BsuRI GGCC 1 cut(s) 543
BtgI CCRYGG 2 cut(s) 192, 360
BtgZI GCGATG 1 cut(s) 155
BtrI CACGTC 1 cut(s) 116
BtsCI GGATG 2 cut(s) 184, 248
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 2 cut(s) 150, 618
Cac8I GCNNGC 3 cut(s) 16, 545, 594
CaiI CAGNNNCTG 1 cut(s) 544
Cfr13I GGNCC 1 cut(s) 541
Csp6I GTAC 3 cut(s) 143, 239, 370
CviAII CATG 6 cut(s) 71, 104, 193, 296, 361, 423
CviQI GTAC 3 cut(s) 143, 239, 370
DdeI CTNAG 2 cut(s) 45, 264
Eam1104I CTCTTC 1 cut(s) 658
EarI CTCTTC 1 cut(s) 658
Eco130I CCWWGG 2 cut(s) 192, 360
Eco32I GATATC 2 cut(s) 301, 420
Eco88I CYCGRG 2 cut(s) 398, 562
EcoO109I RGGNCCY 1 cut(s) 541
EcoRV GATATC 2 cut(s) 301, 420
EcoT14I CCWWGG 2 cut(s) 192, 360
ErhI CCWWGG 2 cut(s) 192, 360
Esp3I CGTCTC 1 cut(s) 437
FaeI CATG 6 cut(s) 74, 107, 196, 299, 364, 426
FaqI GGGAC 2 cut(s) 523, 595
FatI CATG 6 cut(s) 70, 103, 192, 295, 360, 422
FblI GTMKAC 1 cut(s) 94
Fnu4HI GCNGC 3 cut(s) 26, 120, 282
FokI GGATG 2 cut(s) 191, 235
Fsp4HI GCNGC 3 cut(s) 26, 120, 282
FspBI CTAG 1 cut(s) 132
GluI GCNGC 3 cut(s) 26, 120, 282
GsaI CCCAGC 3 cut(s) 178, 480, 645
HaeIII GGCC 1 cut(s) 543
Hin1II CATG 6 cut(s) 74, 107, 196, 299, 364, 426
HinfI GANTC 7 cut(s) 33, 347, 387, 396, 451, 560, 629
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 4 cut(s) 160, 267, 469, 634
Hpy188III TCNNGA 1 cut(s) 384
Hpy8I GTNNAC 1 cut(s) 95
HpyAV CCTTC 3 cut(s) 266, 571, 663
HpyCH4III ACNGT 2 cut(s) 142, 613
HpyCH4IV ACGT 1 cut(s) 115
HpyCH4V TGCA 4 cut(s) 103, 155, 314, 547
HpyF10VI GCNNNNNNNGC 4 cut(s) 180, 269, 278, 287
HpyF3I CTNAG 2 cut(s) 45, 264
HpySE526I ACGT 1 cut(s) 115
Hsp92II CATG 6 cut(s) 74, 107, 196, 299, 364, 426
LmnI GCTCC 1 cut(s) 622
LpnPI CCDG 9 cut(s) 83, 160, 369, 462, 514, 524, 557, 578, 627
Lsp1109I GCAGC 3 cut(s) 12, 106, 268
LweI GCATC 2 cut(s) 164, 178
MaeI CTAG 1 cut(s) 132
MaeII ACGT 1 cut(s) 115
MaeIII GTNAC 1 cut(s) 148
MbiI CCGCTC 1 cut(s) 496
MboII GAAGA 3 cut(s) 123, 194, 675
MluCI AATT 4 cut(s) 197, 309, 456, 598
MlyI GAGTC 4 cut(s) 390, 445, 554, 623
MnlI CCTC 7 cut(s) 256, 261, 401, 406, 565, 652, 659
MroXI GAANNNNTTC 1 cut(s) 201
MspA1I CMGCKG 2 cut(s) 476, 641
Mva1269I GAATGC 1 cut(s) 16
MwoI GCNNNNNNNGC 4 cut(s) 180, 269, 278, 287
NcoI CCATGG 2 cut(s) 192, 360
NlaIII CATG 6 cut(s) 74, 107, 196, 299, 364, 426
NlaIV GGNNCC 1 cut(s) 618
NmuCI GTSAC 1 cut(s) 148
PctI GAATGC 1 cut(s) 16
PdmI GAANNNNTTC 1 cut(s) 201
PfeI GAWTC 3 cut(s) 33, 347, 387
PkrI GCNGC 3 cut(s) 27, 121, 283
PleI GAGTC 4 cut(s) 390, 445, 554, 623
PpsI GAGTC 4 cut(s) 390, 445, 554, 623
PsiI TTATAA 1 cut(s) 356
PspFI CCCAGC 3 cut(s) 174, 476, 641
PspN4I GGNNCC 1 cut(s) 618
PspPI GGNCC 1 cut(s) 541
PstNI CAGNNNCTG 1 cut(s) 544
PvuII CAGCTG 2 cut(s) 476, 641
RsaI GTAC 3 cut(s) 144, 240, 371
RsaNI GTAC 3 cut(s) 143, 239, 370
SatI GCNGC 3 cut(s) 26, 120, 282
Sau96I GGNCC 1 cut(s) 541
ScaI AGTACT 1 cut(s) 371
SchI GAGTC 4 cut(s) 390, 445, 554, 623
SfaNI GCATC 2 cut(s) 164, 178
SfcI CTRYAG 1 cut(s) 521
Sse9I AATT 4 cut(s) 197, 309, 456, 598
SsiI CCGC 2 cut(s) 28, 496
SspMI CTAG 1 cut(s) 132
StyI CCWWGG 2 cut(s) 192, 360
TaaI ACNGT 2 cut(s) 142, 613
TaiI ACGT 1 cut(s) 118
TaqI TCGA 3 cut(s) 232, 394, 492
TasI AATT 4 cut(s) 197, 309, 456, 598
TatI WGTACW 2 cut(s) 238, 369
TfiI GAWTC 3 cut(s) 33, 347, 387
TscAI CASTG 2 cut(s) 157, 618
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 3 cut(s) 25, 119, 281
Tsp45I GTSAC 1 cut(s) 148
TspRI CASTG 2 cut(s) 157, 618
XapI RAATTY 2 cut(s) 197, 598
XmiI GTMKAC 1 cut(s) 94
XmnI GAANNNNTTC 1 cut(s) 201
XspI CTAG 1 cut(s) 132
ZrmI AGTACT 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.