Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007094

Physical Location & Seq

Genomic Coordinates Forward (+)

13280112 .. 13281002

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g12540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTCGGGTCGAATGCTGAAGAAAGTTTTGAAGGAACAAGAAGAAGAAGAAGACCGACACGTAATAGTATCCGAATCAGAAGGAGAAGAAGAAAGCCAGCAGCTCAATGGAAAAGTTAAAATCAATCCCCTTGACCTCCTCAACGGCGGCGGCGACGACGACAACCACCAGGAGGATGAATCAGAAACTGTTGATGAACCCGTGGTTGTTGTGCCTGAGCTGAAAACGAAGGCCGGTGTAGCTTCAACCAACGATCAAAAATCAAAGAAGAAGAAAAAGAAGAAAAGCAAAGAGGCTTCTTCCTCTTCTTCGGCTGCTTCCAATGTCGAAAAGCCCCTGGATGGGATTCTTGAATCCATTTCTTTGGATGCCTCGGAAAAAGCAGCCAGCGGAAATGGTTGTGAGAATTTGGCTAAGCCGTGTGCGCCCTCTGTGCTGACACTGAGCTGCGGAGAATCTTTGGCTCTAAGGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tcf25

Protein Analysis

159

Amino Acids

16.93

Weight (kDa)

4.87

Isoelectric Point (pI)

52.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46900
fragaria_vesca	FvH4_7g18270 FvH4_7g18270
malus_domestica	MD01G1098500.v1.1 MD02G1051800.v1.1 MD07G1165200.v1.1
prunus_persica	Prupe.2G203900_v2.0.a1 Prupe.2G203900_v2.0.a1
pyrus_communis	pycom01g11990 pycom01g12090 pycom01g12230 pycom01g12240 pycom01g12540 pycom07g16040
rosa_chinensis	RchiOBHm_Chr1g0361851
rosa_laevigata	RLG00000027697
rosa_multiflora	Rmu_ssc0000124.1_g000015 Rmu_ssc0000124.1_g000023
rosa_roxburghii	Rroxscaffold_4G00294650
rosa_rugosa	Rorug01G0291900
rosa_samantha	Rh1AG302500 Rh1BG265600 Rh1CG283700 Rh1DG295600
rosa_wichuraiana	Rw1G026800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	147, 150, 390, 450
AcsI	RAATTY	1 cut(s)	406
AcuI	CTGAAG	1 cut(s)	38
AfiI	CCNNNNNNNGG	3 cut(s)	172, 341, 342
AflIII	ACRYGT	1 cut(s)	58
AgsI	TTSAA	3 cut(s)	31, 246, 353
AjnI	CCWGG	2 cut(s)	168, 336
AluBI	AGCT	4 cut(s)	103, 220, 242, 447
AluI	AGCT	4 cut(s)	103, 220, 242, 447
AlwNI	CAGNNNCTG	1 cut(s)	188
AoxI	GGCC	1 cut(s)	231
ApeKI	GCWGC	4 cut(s)	100, 314, 383, 447
ApoI	RAATTY	1 cut(s)	406
AspLEI	GCGC	1 cut(s)	427
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	4 cut(s)	112, 301, 395, 434
BccI	CCATC	1 cut(s)	335
BceAI	ACGGC	2 cut(s)	160, 403
BciT130I	CCWGG	2 cut(s)	170, 338
BciVI	GTATCC	1 cut(s)	79
BfuI	GTATCC	1 cut(s)	79
BisI	GCNGC	6 cut(s)	101, 148, 151, 315, 384, 448
BlpI	GCTNAGC	1 cut(s)	414
BlsI	GCNGC	6 cut(s)	102, 149, 152, 316, 385, 449
Bme1390I	CCNGG	2 cut(s)	170, 338
BmrFI	CCNGG	2 cut(s)	170, 338
BmsI	GCATC	1 cut(s)	358
BpiI	GAAGAC	1 cut(s)	57
Bpu10I	CCTNAGC	1 cut(s)	216
Bpu1102I	GCTNAGC	1 cut(s)	414
BsaAI	YACGTR	1 cut(s)	61
BsaJI	CCNNGG	3 cut(s)	201, 336, 372
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 341, 342
Bse118I	RCCGGY	1 cut(s)	233
BseBI	CCWGG	2 cut(s)	170, 338
BseDI	CCNNGG	3 cut(s)	201, 336, 372
BseGI	GGATG	3 cut(s)	181, 346, 373
BseLI	CCNNNNNNNGG	3 cut(s)	172, 341, 342
BseMII	CTCAG	2 cut(s)	207, 434
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	4 cut(s)	112, 301, 395, 434
BshFI	GGCC	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	234
BslI	CCNNNNNNNGG	3 cut(s)	172, 341, 342
BsmI	GAATGC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	233
Bsp143I	GATC	1 cut(s)	253
Bsp1720I	GCTNAGC	1 cut(s)	414
BspACI	CCGC	4 cut(s)	147, 150, 390, 450
BspANI	GGCC	1 cut(s)	233
BspCNI	CTCAG	2 cut(s)	208, 435
BsrFI	RCCGGY	1 cut(s)	233
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	3 cut(s)	201, 336, 372
BssMI	GATC	1 cut(s)	253
Bst2UI	CCWGG	2 cut(s)	170, 338
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	310
BstBAI	YACGTR	1 cut(s)	61
BstC8I	GCNNGC	2 cut(s)	98, 388
BstDEI	CTNAG	4 cut(s)	216, 414, 443, 467
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	3 cut(s)	181, 346, 373
BstHHI	GCGC	1 cut(s)	427
BstKTI	GATC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 424, 433
BstNI	CCWGG	2 cut(s)	170, 338
BstSCI	CCNGG	2 cut(s)	168, 336
BstV1I	GCAGC	4 cut(s)	112, 301, 395, 434
BstV2I	GAAGAC	1 cut(s)	57
BstXI	CCANNNNNNTGG	1 cut(s)	364
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	233
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	3 cut(s)	181, 346, 373
BtsIMutI	CAGTG	1 cut(s)	440
Cac8I	GCNNGC	2 cut(s)	98, 388
CaiI	CAGNNNCTG	1 cut(s)	188
CfoI	GCGC	1 cut(s)	427
Cfr10I	RCCGGY	1 cut(s)	233
DdeI	CTNAG	4 cut(s)	216, 414, 443, 467
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	38
EcoRII	CCWGG	2 cut(s)	168, 336
Fnu4HI	GCNGC	6 cut(s)	101, 148, 151, 315, 384, 448
FokI	GGATG	3 cut(s)	188, 353, 380
Fsp4HI	GCNGC	6 cut(s)	101, 148, 151, 315, 384, 448
GlaI	GCGC	1 cut(s)	426
GluI	GCNGC	6 cut(s)	101, 148, 151, 315, 384, 448
HaeIII	GGCC	1 cut(s)	233
HapII	CCGG	1 cut(s)	234
HhaI	GCGC	1 cut(s)	427
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HinfI	GANTC	5 cut(s)	74, 179, 346, 353, 455
HpaII	CCGG	1 cut(s)	234
Hpy188I	TCNGA	4 cut(s)	73, 79, 184, 376
Hpy188III	TCNNGA	1 cut(s)	350
Hpy99I	CGWCG	2 cut(s)	158, 161
HpyAV	CCTTC	3 cut(s)	25, 74, 223
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	60
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 424, 433
HpyF3I	CTNAG	4 cut(s)	216, 414, 443, 467
HpySE526I	ACGT	1 cut(s)	60
HspAI	GCGC	1 cut(s)	425
Kzo9I	GATC	1 cut(s)	253
LpnPI	CCDG	8 cut(s)	110, 155, 182, 228, 247, 323, 350, 400
Lsp1109I	GCAGC	4 cut(s)	112, 301, 395, 434
LweI	GCATC	1 cut(s)	358
MaeII	ACGT	1 cut(s)	60
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MluCI	AATT	1 cut(s)	406
MnlI	CCTC	7 cut(s)	146, 149, 166, 286, 313, 382, 439
MseI	TTAA	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	390
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	2 cut(s)	170, 338
Mva1269I	GAATGC	1 cut(s)	18
MvaI	CCWGG	2 cut(s)	170, 338
MwoI	GCNNNNNNNGC	3 cut(s)	239, 424, 433
NdeII	GATC	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PctI	GAATGC	1 cut(s)	18
PfeI	GAWTC	5 cut(s)	74, 179, 346, 353, 455
PkrI	GCNGC	6 cut(s)	102, 149, 152, 316, 385, 449
Ppu21I	YACGTR	1 cut(s)	61
Psp6I	CCWGG	2 cut(s)	168, 336
PspGI	CCWGG	2 cut(s)	168, 336
PstNI	CAGNNNCTG	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	6 cut(s)	101, 148, 151, 315, 384, 448
Sau3AI	GATC	1 cut(s)	253
ScrFI	CCNGG	2 cut(s)	170, 338
SetI	ASST	7 cut(s)	63, 105, 138, 222, 244, 449, 473
SfaNI	GCATC	1 cut(s)	358
Sse9I	AATT	1 cut(s)	406
SsiI	CCGC	4 cut(s)	147, 150, 390, 450
StyD4I	CCNGG	2 cut(s)	168, 336
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	2 cut(s)	10, 327
TaqII	GACCGA	1 cut(s)	69
TasI	AATT	1 cut(s)	406
TauI	GCSGC	2 cut(s)	150, 153
TfiI	GAWTC	5 cut(s)	74, 179, 346, 353, 455
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	1 cut(s)	447
TseI	GCWGC	4 cut(s)	100, 314, 383, 447
TspDTI	ATGAA	2 cut(s)	192, 210
TspRI	CASTG	1 cut(s)	447
XapI	RAATTY	1 cut(s)	406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.