AT2G47640

Small nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002981
Physical Location & Seq
Forward (+)
19537090 .. 19538820
1731 bp
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UTR
Exon/CDS
Intron
AT2G47640.2

Sequence Viewer

Length: 330 bp
ATGAGCAAGCCAATGGAAGAGGATACCAATCAGGGCAAGACTGAGGAAGAGGAATTCAACACCGGGCCACTCTCTGTTCTTATGATGAGCGTCAAGAATAACACTCAGGTTTTAATCAATTGCCGGAACAACAGGAAACTTCTTGGGCGAGTGAGGGCGTTTGACAGACACTGCAACATGGTTCTTGAAAATGTCAGAGAGATGTGGACTGAGGTTCCGAAAACTGGGAAAGGCAAGAAGAAAGCACTTCCGGTGAACAGAGATCGGTTCATAAGCAAGATGTTTCTACGTGGAGACTCGGTCATTATCGTCCTCAGGAATCCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

109

Amino Acids

12.63

Weight (kDa)

9.94

Isoelectric Point (pI)

35.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 29 - 103 3.3e-18 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 224
AgsI TTSAA 2 cut(s) 58, 188
Alw26I GTCTC 1 cut(s) 288
AlwNI CAGNNNCTG 1 cut(s) 171
AoxI GGCC 1 cut(s) 65
ApoI RAATTY 1 cut(s) 53
AspS9I GGNCC 1 cut(s) 65
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 265
AxyI CCTNAGG 1 cut(s) 314
BciVI GTATCC 1 cut(s) 16
BcnI CCSGG 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 288
BfuI GTATCC 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 64
BmrI ACTGGG 1 cut(s) 234
BmuI ACTGGG 1 cut(s) 234
BpuMI CCSGG 1 cut(s) 64
BsaAI YACGTR 1 cut(s) 290
BsaBI GATNNNNATC 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 250
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 229
Bse21I CCTNAGG 1 cut(s) 314
Bse8I GATNNNNATC 1 cut(s) 27
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMII CTCAG 4 cut(s) 33, 119, 201, 328
BseNI ACTGG 1 cut(s) 229
BshFI GGCC 1 cut(s) 67
BsiSI CCGG 3 cut(s) 63, 124, 251
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 288
BsnI GGCC 1 cut(s) 67
Bsp143I GATC 1 cut(s) 262
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 4 cut(s) 34, 118, 202, 327
BspLI GGNNCC 1 cut(s) 216
BsrI ACTGG 1 cut(s) 229
BssMI GATC 1 cut(s) 262
Bst6I CTCTTC 2 cut(s) 12, 42
BstBAI YACGTR 1 cut(s) 290
BstC8I GCNNGC 1 cut(s) 8
BstDEI CTNAG 4 cut(s) 42, 105, 210, 314
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 62
Bsu36I CCTNAGG 1 cut(s) 314
BsuI GTATCC 1 cut(s) 16
BsuRI GGCC 1 cut(s) 67
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 8
CaiI CAGNNNCTG 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 65
CseI GACGC 1 cut(s) 79
CviAII CATG 1 cut(s) 178
CviJI RGCY 2 cut(s) 10, 67
CviKI_1 RGCY 2 cut(s) 10, 67
DdeI CTNAG 4 cut(s) 42, 105, 210, 314
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
Eam1104I CTCTTC 2 cut(s) 12, 42
EarI CTCTTC 2 cut(s) 12, 42
Eco81I CCTNAGG 1 cut(s) 314
EcoRI GAATTC 1 cut(s) 53
FaeI CATG 1 cut(s) 181
FaiI YATR 3 cut(s) 83, 179, 272
FatI CATG 1 cut(s) 177
HaeIII GGCC 1 cut(s) 67
HapII CCGG 3 cut(s) 63, 124, 251
HgaI GACGC 1 cut(s) 79
Hin1II CATG 1 cut(s) 181
HinfI GANTC 2 cut(s) 296, 319
HpaII CCGG 3 cut(s) 63, 124, 251
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 2 cut(s) 207, 256
Hpy188I TCNGA 2 cut(s) 197, 219
Hpy188III TCNNGA 3 cut(s) 94, 185, 316
Hpy8I GTNNAC 2 cut(s) 207, 256
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 1 cut(s) 174
HpyF3I CTNAG 4 cut(s) 42, 105, 210, 314
HpySE526I ACGT 1 cut(s) 289
Hsp92II CATG 1 cut(s) 181
Kzo9I GATC 1 cut(s) 262
LpnPI CCDG 8 cut(s) 17, 76, 92, 118, 137, 210, 264, 301
MaeII ACGT 1 cut(s) 289
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 3 cut(s) 29, 59, 250
MfeI CAATTG 1 cut(s) 118
MluCI AATT 2 cut(s) 53, 118
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 6 cut(s) 13, 37, 43, 147, 205, 323
MseI TTAA 1 cut(s) 113
MspI CCGG 3 cut(s) 63, 124, 251
MspR9I CCNGG 1 cut(s) 64
MunI CAATTG 1 cut(s) 118
NciI CCSGG 1 cut(s) 64
NdeII GATC 1 cut(s) 262
NlaIII CATG 1 cut(s) 181
NlaIV GGNNCC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 319
PflFI GACNNNGTC 1 cut(s) 299
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
Ppu21I YACGTR 1 cut(s) 290
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 1 cut(s) 65
PstNI CAGNNNCTG 1 cut(s) 171
PsyI GACNNNGTC 1 cut(s) 299
SaqAI TTAA 1 cut(s) 113
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 1 cut(s) 64
SetI ASST 3 cut(s) 111, 216, 292
Sse9I AATT 2 cut(s) 53, 118
StyD4I CCNGG 1 cut(s) 62
TaiI ACGT 1 cut(s) 292
TaqII GACCGA 1 cut(s) 289
TasI AATT 2 cut(s) 53, 118
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TscAI CASTG 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 259
TspRI CASTG 1 cut(s) 176
Tth111I GACNNNGTC 1 cut(s) 299
XapI RAATTY 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.