Rroxscaffold_3G00253910

Small nuclear ribonucleoprotein SM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002981
Physical Location & Seq
Forward (+)
48105906 .. 48109028
3123 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00253910.1

Sequence Viewer

Length: 324 bp
ATGAGTCGGCCAATGGAGGAAGATGGTTCCAAGAATGAGGAAGAGGAGTTCAATACTGGACCACTTTCTGTTCTGATGATGAGTGTCAAAAATAACACTCAGGTCCTCATCAATTGTCGTAATAACAGGAAGCTTCTTGGCCGTGTGAGGGCTTTTGATAGACATTGCAACATGGTCCTTGAGAATGTTAAGGAGATGTGGACCGAGGTCCCAAAAACTGGAAAGGGCAAGAAGAAAGCACAACCGGTTAACAAAGATAGATTCATCAGCAAGATGTTCCTCCGTGGTGATTCTGTGATTATAGTTCTTAGGAATCCTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

107

Amino Acids

12.38

Weight (kDa)

9.88

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 28 - 102 1.1e-18 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 218
AcoI YGGCCR 2 cut(s) 8, 139
AfiI CCNNNNNNNGG 2 cut(s) 148, 218
AgeI ACCGGT 1 cut(s) 244
AgsI TTSAA 1 cut(s) 52
AloI GAACNNNNNNTCC 2 cut(s) 32, 64
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
AoxI GGCC 2 cut(s) 8, 139
AsiGI ACCGGT 1 cut(s) 244
AspS9I GGNCC 5 cut(s) 59, 103, 175, 201, 208
AsuHPI GGTGA 1 cut(s) 299
AvaII GGWCC 5 cut(s) 59, 103, 175, 201, 208
BccI CCATC 1 cut(s) 17
BceAI ACGGC 1 cut(s) 126
Bme18I GGWCC 5 cut(s) 59, 103, 175, 201, 208
BmgT120I GGNCC 5 cut(s) 59, 103, 175, 201, 208
BmiI GGNNCC 2 cut(s) 28, 210
BoxI GACNNNNGTC 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 204, 283
BsaWI WCCGGW 1 cut(s) 244
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 218
Bse118I RCCGGY 1 cut(s) 244
Bse1I ACTGG 2 cut(s) 61, 223
Bse3DI GCAATG 1 cut(s) 163
BseDI CCNNGG 2 cut(s) 204, 283
BseLI CCNNNNNNNGG 2 cut(s) 148, 218
BseMI GCAATG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 2 cut(s) 61, 223
BseRI GAGGAG 1 cut(s) 59
BshFI GGCC 2 cut(s) 10, 141
BshTI ACCGGT 1 cut(s) 244
BsiSI CCGG 1 cut(s) 245
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 2 cut(s) 148, 218
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 2 cut(s) 10, 141
BspANI GGCC 2 cut(s) 10, 141
BspCNI CTCAG 1 cut(s) 112
BspLI GGNNCC 2 cut(s) 28, 210
BsrDI GCAATG 1 cut(s) 163
BsrFI RCCGGY 1 cut(s) 244
BsrI ACTGG 2 cut(s) 61, 223
BssAI RCCGGY 1 cut(s) 244
BssECI CCNNGG 2 cut(s) 204, 283
Bst6I CTCTTC 1 cut(s) 36
BstDEI CTNAG 3 cut(s) 99, 308, 318
BstDSI CCRYGG 1 cut(s) 283
BstPAI GACNNNNGTC 1 cut(s) 206
BsuRI GGCC 2 cut(s) 10, 141
BtgI CCRYGG 1 cut(s) 283
Cfr10I RCCGGY 1 cut(s) 244
Cfr13I GGNCC 5 cut(s) 59, 103, 175, 201, 208
CspAI ACCGGT 1 cut(s) 244
CviAII CATG 1 cut(s) 172
CviJI RGCY 4 cut(s) 10, 133, 141, 152
CviKI_1 RGCY 4 cut(s) 10, 133, 141, 152
DdeI CTNAG 3 cut(s) 99, 308, 318
EaeI YGGCCR 2 cut(s) 8, 139
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco47I GGWCC 5 cut(s) 59, 103, 175, 201, 208
EcoO109I RGGNCCY 2 cut(s) 103, 208
FaeI CATG 1 cut(s) 175
FaiI YATR 2 cut(s) 173, 302
FaqI GGGAC 1 cut(s) 194
FatI CATG 1 cut(s) 171
HaeIII GGCC 2 cut(s) 10, 141
HapII CCGG 1 cut(s) 245
Hin1II CATG 1 cut(s) 175
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 4 cut(s) 4, 261, 290, 313
HpaI GTTAAC 1 cut(s) 250
HpaII CCGG 1 cut(s) 245
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 2 cut(s) 201, 250
Hpy188I TCNGA 1 cut(s) 75
Hpy8I GTNNAC 2 cut(s) 201, 250
HpyCH4V TGCA 1 cut(s) 168
HpyF3I CTNAG 3 cut(s) 99, 308, 318
Hsp92II CATG 1 cut(s) 175
KspAI GTTAAC 1 cut(s) 250
LpnPI CCDG 5 cut(s) 42, 86, 112, 204, 258
MboII GAAGA 3 cut(s) 32, 53, 244
MfeI CAATTG 1 cut(s) 112
MluCI AATT 1 cut(s) 112
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 7 cut(s) 10, 31, 37, 116, 141, 199, 290
MseI TTAA 2 cut(s) 189, 249
MspI CCGG 1 cut(s) 245
MunI CAATTG 1 cut(s) 112
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 2 cut(s) 28, 210
PfeI GAWTC 3 cut(s) 261, 290, 313
PflMI CCANNNNNTGG 1 cut(s) 218
PinAI ACCGGT 1 cut(s) 244
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PpuMI RGGWCCY 2 cut(s) 103, 208
PshAI GACNNNNGTC 1 cut(s) 206
Psp5II RGGWCCY 2 cut(s) 103, 208
PspN4I GGNNCC 2 cut(s) 28, 210
PspPI GGNCC 5 cut(s) 59, 103, 175, 201, 208
PspPPI RGGWCCY 2 cut(s) 103, 208
SaqAI TTAA 2 cut(s) 189, 249
Sau96I GGNCC 5 cut(s) 59, 103, 175, 201, 208
SchI GAGTC 1 cut(s) 13
SetI ASST 3 cut(s) 105, 135, 210
SinI GGWCC 5 cut(s) 59, 103, 175, 201, 208
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 1 cut(s) 112
TaqII GACCGA 1 cut(s) 218
TasI AATT 1 cut(s) 112
TfiI GAWTC 3 cut(s) 261, 290, 313
Tru1I TTAA 2 cut(s) 189, 249
Tru9I TTAA 2 cut(s) 189, 249
TspDTI ATGAA 1 cut(s) 253
TspGWI ACGGA 1 cut(s) 272
Van91I CCANNNNNTGG 1 cut(s) 218
VpaK11BI GGWCC 5 cut(s) 59, 103, 175, 201, 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.