RchiOBHm_Chr2g0102251

Small nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002981
Physical Location & Seq
Forward (+)
13695224 .. 13698400
3177 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47671

Sequence Viewer

Length: 303 bp
ATGGGTGCCAGGAATGAAGAAGAGGAGTTCAATACAGGACCACTCTCGATTCTCATGATGAGTGTCAAGAATCATACACAGGTCCTCATCAATTGCCGCAACAACAGAAAGCTTTTTGGCACTGTGAGAGCATTTGATCGGCACTGCAACATGGTTCTGGAAAATGTCAAGGAGATGTGGACTGAGGTTCCAAGGACCGGAAAAGGCAAGAAGAAAGCCCAAGCGGTAAACAAAGACAGGTTCATCAGCAAGATGTTTATCCGTGGAGATTCTGTAATCATCGTTCTCAGGAATCCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

100

Amino Acids

11.56

Weight (kDa)

10.17

Isoelectric Point (pI)

29.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 22 - 95 6.4e-19 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 5
AciI CCGC 2 cut(s) 97, 224
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 1 cut(s) 31
AjnI CCWGG 1 cut(s) 8
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
AspS9I GGNCC 3 cut(s) 38, 82, 195
AvaII GGWCC 3 cut(s) 38, 82, 195
BanI GGYRCC 1 cut(s) 5
BciT130I CCWGG 1 cut(s) 10
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 10
Bme18I GGWCC 3 cut(s) 38, 82, 195
BmgT120I GGNCC 3 cut(s) 38, 82, 195
BmiI GGNNCC 2 cut(s) 7, 189
BmrFI CCNGG 1 cut(s) 10
BsaBI GATNNNNATC 1 cut(s) 257
BsaJI CCNNGG 2 cut(s) 191, 262
BsaWI WCCGGW 1 cut(s) 197
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse8I GATNNNNATC 1 cut(s) 257
BseBI CCWGG 1 cut(s) 10
BseDI CCNNGG 2 cut(s) 191, 262
BseJI GATNNNNATC 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMII CTCAG 2 cut(s) 174, 301
BseRI GAGGAG 1 cut(s) 38
BshNI GGYRCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 198
BslI CCNNNNNNNGG 1 cut(s) 197
Bsp143I GATC 1 cut(s) 136
BspACI CCGC 2 cut(s) 97, 224
BspCNI CTCAG 2 cut(s) 175, 300
BspHI TCATGA 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 7, 189
BspT107I GGYRCC 1 cut(s) 5
BssECI CCNNGG 2 cut(s) 191, 262
BssMI GATC 1 cut(s) 136
BssT1I CCWWGG 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 10
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 15
BstDEI CTNAG 2 cut(s) 183, 287
BstDSI CCRYGG 1 cut(s) 262
BstKTI GATC 1 cut(s) 139
BstMBI GATC 1 cut(s) 136
BstNI CCWGG 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 8
BtgI CCRYGG 1 cut(s) 262
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 2 cut(s) 120, 142
CciI TCATGA 1 cut(s) 54
Cfr13I GGNCC 3 cut(s) 38, 82, 195
CviAII CATG 2 cut(s) 55, 151
CviJI RGCY 2 cut(s) 112, 218
CviKI_1 RGCY 2 cut(s) 112, 218
DdeI CTNAG 2 cut(s) 183, 287
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 191
Eco47I GGWCC 3 cut(s) 38, 82, 195
EcoO109I RGGNCCY 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 191
ErhI CCWWGG 1 cut(s) 191
FaeI CATG 2 cut(s) 58, 154
FaiI YATR 3 cut(s) 56, 75, 152
FatI CATG 2 cut(s) 54, 150
Fnu4HI GCNGC 1 cut(s) 97
Fsp4HI GCNGC 1 cut(s) 97
GluI GCNGC 1 cut(s) 97
HapII CCGG 1 cut(s) 198
Hin1II CATG 2 cut(s) 58, 154
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 4 cut(s) 49, 70, 269, 292
HpaII CCGG 1 cut(s) 198
Hpy166II GTNNAC 2 cut(s) 180, 229
Hpy188III TCNNGA 5 cut(s) 46, 55, 67, 158, 289
Hpy8I GTNNAC 2 cut(s) 180, 229
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4V TGCA 1 cut(s) 147
HpyF3I CTNAG 2 cut(s) 183, 287
Hsp92II CATG 2 cut(s) 58, 154
Kzo9I GATC 1 cut(s) 136
LpnPI CCDG 7 cut(s) 21, 22, 65, 143, 211, 223, 274
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 3 cut(s) 29, 32, 223
MfeI CAATTG 1 cut(s) 91
MluCI AATT 1 cut(s) 91
MnlI CCTC 3 cut(s) 16, 95, 178
MspI CCGG 1 cut(s) 198
MspR9I CCNGG 1 cut(s) 10
MunI CAATTG 1 cut(s) 91
MvaI CCWGG 1 cut(s) 10
NdeII GATC 1 cut(s) 136
NlaIII CATG 2 cut(s) 58, 154
NlaIV GGNNCC 2 cut(s) 7, 189
PagI TCATGA 1 cut(s) 54
PfeI GAWTC 4 cut(s) 49, 70, 269, 292
PkrI GCNGC 1 cut(s) 98
PpuMI RGGWCCY 1 cut(s) 82
Psp5II RGGWCCY 1 cut(s) 82
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 7, 189
PspPI GGNCC 3 cut(s) 38, 82, 195
PspPPI RGGWCCY 1 cut(s) 82
PsrI GAACNNNNNNTAC 2 cut(s) 267, 299
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 1 cut(s) 136
Sau96I GGNCC 3 cut(s) 38, 82, 195
ScrFI CCNGG 1 cut(s) 10
SetI ASST 4 cut(s) 84, 114, 189, 242
SinI GGWCC 3 cut(s) 38, 82, 195
Sse9I AATT 1 cut(s) 91
SsiI CCGC 2 cut(s) 97, 224
StyD4I CCNGG 1 cut(s) 8
StyI CCWWGG 1 cut(s) 191
TaaI ACNGT 1 cut(s) 124
TaqI TCGA 1 cut(s) 47
TasI AATT 1 cut(s) 91
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 4 cut(s) 49, 70, 269, 292
TscAI CASTG 2 cut(s) 127, 149
TspDTI ATGAA 2 cut(s) 30, 232
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 2 cut(s) 127, 149
VpaK11BI GGWCC 3 cut(s) 38, 82, 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.