Rroxscaffold_2G00140630

Small nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002981
Physical Location & Seq
Reverse (-)
78878696 .. 78880787
2092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00140630.1

Sequence Viewer

Length: 327 bp
ATGTCCAGCAGGCCAATGGAAGAAGATGGGTGCCAGGAACAAAAAGAGGAGTTCAGTACAGGACCACTCTCGATTCTCATGATGAGTGTCAAGAATCATACGCAGGTCCTCATCAATTGCCGCAACAACAGAAAGCTTTTCGGCACTGTGAGAGCATTTGATCGGCACTGCAACATGGTTCTGGAAAATGTCAAGGAGATGTGGACTGAGGTTCCAAGGACCGGAAAAGGCAAGAAGAAAGCCCAAGCGGTAAACAAAGACAGGTTCATCAGCAAGATGTTTATCCGTGGAGATTCTGTAATCATCGTTCTCAGGAATCCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

108

Amino Acids

12.49

Weight (kDa)

9.81

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 30 - 103 8.2e-19 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 94
AccB1I GGYRCC 1 cut(s) 30
AciI CCGC 2 cut(s) 121, 248
AfaI GTAC 1 cut(s) 58
AfiI CCNNNNNNNGG 1 cut(s) 221
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
AoxI GGCC 1 cut(s) 11
AspS9I GGNCC 3 cut(s) 62, 106, 219
AvaII GGWCC 3 cut(s) 62, 106, 219
BanI GGYRCC 1 cut(s) 30
BccI CCATC 1 cut(s) 20
BciT130I CCWGG 1 cut(s) 35
BfuAI ACCTGC 1 cut(s) 94
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
Bme1390I CCNGG 1 cut(s) 35
Bme18I GGWCC 3 cut(s) 62, 106, 219
BmgT120I GGNCC 3 cut(s) 62, 106, 219
BmiI GGNNCC 2 cut(s) 32, 213
BmrFI CCNGG 1 cut(s) 35
BsaBI GATNNNNATC 1 cut(s) 281
BsaJI CCNNGG 2 cut(s) 215, 286
BsaWI WCCGGW 1 cut(s) 221
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse8I GATNNNNATC 1 cut(s) 281
BseBI CCWGG 1 cut(s) 35
BseDI CCNNGG 2 cut(s) 215, 286
BseJI GATNNNNATC 1 cut(s) 281
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMII CTCAG 2 cut(s) 198, 325
BseRI GAGGAG 1 cut(s) 62
BshFI GGCC 1 cut(s) 13
BshNI GGYRCC 1 cut(s) 30
BsiSI CCGG 1 cut(s) 222
BslI CCNNNNNNNGG 1 cut(s) 221
BsnI GGCC 1 cut(s) 13
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 2 cut(s) 121, 248
BspANI GGCC 1 cut(s) 13
BspCNI CTCAG 2 cut(s) 199, 324
BspHI TCATGA 1 cut(s) 78
BspLI GGNNCC 2 cut(s) 32, 213
BspMI ACCTGC 1 cut(s) 94
BspT107I GGYRCC 1 cut(s) 30
BssECI CCNNGG 2 cut(s) 215, 286
BssMI GATC 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 215
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 2 cut(s) 207, 311
BstDSI CCRYGG 1 cut(s) 286
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstNI CCWGG 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 33
BsuRI GGCC 1 cut(s) 13
BtgI CCRYGG 1 cut(s) 286
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 2 cut(s) 144, 166
BveI ACCTGC 1 cut(s) 94
Cac8I GCNNGC 1 cut(s) 11
CciI TCATGA 1 cut(s) 78
Cfr13I GGNCC 3 cut(s) 62, 106, 219
Csp6I GTAC 1 cut(s) 57
CviAII CATG 2 cut(s) 79, 175
CviJI RGCY 3 cut(s) 13, 136, 242
CviKI_1 RGCY 3 cut(s) 13, 136, 242
CviQI GTAC 1 cut(s) 57
DdeI CTNAG 2 cut(s) 207, 311
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 215
Eco47I GGWCC 3 cut(s) 62, 106, 219
EcoO109I RGGNCCY 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 2 cut(s) 82, 178
FaiI YATR 3 cut(s) 80, 99, 176
FatI CATG 2 cut(s) 78, 174
Fnu4HI GCNGC 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 121
GluI GCNGC 1 cut(s) 121
HaeIII GGCC 1 cut(s) 13
HapII CCGG 1 cut(s) 222
Hin1II CATG 2 cut(s) 82, 178
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 4 cut(s) 73, 94, 293, 316
HpaII CCGG 1 cut(s) 222
Hpy166II GTNNAC 2 cut(s) 204, 253
Hpy188III TCNNGA 5 cut(s) 70, 79, 91, 182, 313
Hpy8I GTNNAC 2 cut(s) 204, 253
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 1 cut(s) 171
HpyF3I CTNAG 2 cut(s) 207, 311
Hsp92II CATG 2 cut(s) 82, 178
Kzo9I GATC 1 cut(s) 160
LpnPI CCDG 9 cut(s) 19, 20, 45, 47, 89, 167, 235, 247, 298
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 3 cut(s) 32, 35, 247
MfeI CAATTG 1 cut(s) 115
MluCI AATT 1 cut(s) 115
MnlI CCTC 3 cut(s) 40, 119, 202
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 1 cut(s) 35
MunI CAATTG 1 cut(s) 115
MvaI CCWGG 1 cut(s) 35
NdeII GATC 1 cut(s) 160
NlaIII CATG 2 cut(s) 82, 178
NlaIV GGNNCC 2 cut(s) 32, 213
PagI TCATGA 1 cut(s) 78
PfeI GAWTC 4 cut(s) 73, 94, 293, 316
PkrI GCNGC 1 cut(s) 122
PpuMI RGGWCCY 1 cut(s) 106
Psp5II RGGWCCY 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 2 cut(s) 32, 213
PspPI GGNCC 3 cut(s) 62, 106, 219
PspPPI RGGWCCY 1 cut(s) 106
PsrI GAACNNNNNNTAC 2 cut(s) 291, 323
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
SatI GCNGC 1 cut(s) 121
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 3 cut(s) 62, 106, 219
ScrFI CCNGG 1 cut(s) 35
SetI ASST 4 cut(s) 108, 138, 213, 266
SinI GGWCC 3 cut(s) 62, 106, 219
Sse9I AATT 1 cut(s) 115
SsiI CCGC 2 cut(s) 121, 248
StyD4I CCNGG 1 cut(s) 33
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 1 cut(s) 148
TaqI TCGA 1 cut(s) 71
TasI AATT 1 cut(s) 115
TatI WGTACW 1 cut(s) 56
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 4 cut(s) 73, 94, 293, 316
TscAI CASTG 2 cut(s) 151, 173
TspDTI ATGAA 1 cut(s) 256
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 2 cut(s) 151, 173
VpaK11BI GGWCC 3 cut(s) 62, 106, 219
XcmI CCANNNNNNNNNTGG 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.