RLG00000003540

Small nuclear ribonucleoprotein SM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002981
Physical Location & Seq
Forward (+)
49805192 .. 49809582
4391 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003540

Sequence Viewer

Length: 549 bp
ATGAGATATGTTAAAGATTCCTGGCTTACCAAAAAAAAAGAAGAAGATATTGTAAAGGAAGTTGAGGGAAATATTGATATTTTAGAATGTTTTTTAGGCGACCCTTACATAAACCCTAGATCGGCACCCTCACTCACTCTCACTCCCCACCGCCTCTCCTTCTTCTCTCAGAAACCTCGCGCTTCATCGATCGGTCTGTATTCAGATTTTCGAGAAAGTGTAGAAATCTACCCATTGGTTCAGGATGAGGGTTCCAAGAATGAGGAAGAGGAGTTCAATACTGGACCACTTTCTGTTCTGATGATGAGTGTGAAAAATAACACTCAGGTCCTCATCAATTGTCGTAATAACAGGAAGCTTCTTGGCCGTGTGAGGGCTTTTGATAGACATTGCAACATGGTCCTTGAGAATGTTAAGGAGATGTGGACCGAGGTCCCAAAAACTGGAAAGGGCAAGAAGAAAGCACAACCAGTTAACAAAGATAGATTCATCAGCAAGATGTTCCTCCGTGGTGATTCTGTGATTATAGTTCTTAGGAATCCTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

183

Amino Acids

21.02

Weight (kDa)

9.34

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 103 - 177 4.5e-18 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 124
AccB7I CCANNNNNTGG 1 cut(s) 443
AccII CGCG 1 cut(s) 180
AciI CCGC 1 cut(s) 151
AcoI YGGCCR 1 cut(s) 364
AfiI CCNNNNNNNGG 3 cut(s) 121, 373, 443
AgsI TTSAA 1 cut(s) 277
AjnI CCWGG 1 cut(s) 20
AloI GAACNNNNNNTCC 2 cut(s) 257, 289
AluBI AGCT 1 cut(s) 358
AluI AGCT 1 cut(s) 358
AoxI GGCC 1 cut(s) 364
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 5 cut(s) 284, 328, 400, 426, 433
AsuHPI GGTGA 1 cut(s) 524
AvaII GGWCC 5 cut(s) 284, 328, 400, 426, 433
BanI GGYRCC 1 cut(s) 124
BceAI ACGGC 1 cut(s) 351
BciT130I CCWGG 1 cut(s) 22
BfaI CTAG 1 cut(s) 117
Bme1390I CCNGG 1 cut(s) 22
Bme18I GGWCC 5 cut(s) 284, 328, 400, 426, 433
BmgT120I GGNCC 5 cut(s) 284, 328, 400, 426, 433
BmiI GGNNCC 3 cut(s) 126, 253, 435
BmrFI CCNGG 1 cut(s) 22
BoxI GACNNNNGTC 1 cut(s) 431
BpuEI CTTGAG 1 cut(s) 425
Bsa29I ATCGAT 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 429, 508
BsaXI ACNNNNNCTCC 4 cut(s) 127, 140, 157, 170
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 373, 443
Bse1I ACTGG 3 cut(s) 286, 448, 470
Bse3DI GCAATG 1 cut(s) 388
BseBI CCWGG 1 cut(s) 22
BseCI ATCGAT 1 cut(s) 188
BseDI CCNNGG 2 cut(s) 429, 508
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 3 cut(s) 121, 373, 443
BseMI GCAATG 1 cut(s) 388
BseMII CTCAG 2 cut(s) 182, 338
BseNI ACTGG 3 cut(s) 286, 448, 470
BseRI GAGGAG 1 cut(s) 284
Bsh1236I CGCG 1 cut(s) 180
Bsh1285I CGRYCG 1 cut(s) 192
BshFI GGCC 1 cut(s) 366
BshNI GGYRCC 1 cut(s) 124
BshVI ATCGAT 1 cut(s) 188
BsiEI CGRYCG 1 cut(s) 192
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 3 cut(s) 121, 373, 443
BsmFI GGGAC 1 cut(s) 419
BsnI GGCC 1 cut(s) 366
Bsp143I GATC 2 cut(s) 119, 189
BspACI CCGC 1 cut(s) 151
BspANI GGCC 1 cut(s) 366
BspCNI CTCAG 2 cut(s) 181, 337
BspDI ATCGAT 1 cut(s) 188
BspFNI CGCG 1 cut(s) 180
BspLI GGNNCC 3 cut(s) 126, 253, 435
BspT107I GGYRCC 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 388
BsrI ACTGG 3 cut(s) 286, 448, 470
BssECI CCNNGG 2 cut(s) 429, 508
BssMI GATC 2 cut(s) 119, 189
Bst2UI CCWGG 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 261
BstDEI CTNAG 4 cut(s) 168, 324, 533, 543
BstDSI CCRYGG 1 cut(s) 508
BstF5I GGATG 1 cut(s) 250
BstFNI CGCG 1 cut(s) 180
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 2 cut(s) 122, 192
BstMBI GATC 2 cut(s) 119, 189
BstMCI CGRYCG 1 cut(s) 192
BstNI CCWGG 1 cut(s) 22
BstPAI GACNNNNGTC 1 cut(s) 431
BstSCI CCNGG 1 cut(s) 20
BstUI CGCG 1 cut(s) 180
Bsu15I ATCGAT 1 cut(s) 188
BsuRI GGCC 1 cut(s) 366
BsuTUI ATCGAT 1 cut(s) 188
BtgI CCRYGG 1 cut(s) 508
BtsCI GGATG 1 cut(s) 250
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 5 cut(s) 284, 328, 400, 426, 433
ClaI ATCGAT 1 cut(s) 188
CviAII CATG 1 cut(s) 397
CviJI RGCY 4 cut(s) 25, 358, 366, 377
CviKI_1 RGCY 4 cut(s) 25, 358, 366, 377
DdeI CTNAG 4 cut(s) 168, 324, 533, 543
DpnI GATC 2 cut(s) 121, 191
DpnII GATC 2 cut(s) 119, 189
EaeI YGGCCR 1 cut(s) 364
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Eco47I GGWCC 5 cut(s) 284, 328, 400, 426, 433
EcoO109I RGGNCCY 2 cut(s) 328, 433
EcoRII CCWGG 1 cut(s) 20
FaeI CATG 1 cut(s) 400
FaiI YATR 4 cut(s) 9, 110, 398, 527
FaqI GGGAC 1 cut(s) 419
FatI CATG 1 cut(s) 396
FokI GGATG 1 cut(s) 257
FspBI CTAG 1 cut(s) 117
GlaI GCGC 1 cut(s) 181
HaeIII GGCC 1 cut(s) 366
HhaI GCGC 1 cut(s) 182
Hin1II CATG 1 cut(s) 400
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HincII GTYRAC 1 cut(s) 475
HindII GTYRAC 1 cut(s) 475
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 4 cut(s) 17, 486, 515, 538
HpaI GTTAAC 1 cut(s) 475
HphI GGTGA 1 cut(s) 524
Hpy166II GTNNAC 2 cut(s) 426, 475
Hpy188I TCNGA 3 cut(s) 171, 205, 300
Hpy188III TCNNGA 2 cut(s) 212, 242
Hpy8I GTNNAC 2 cut(s) 426, 475
HpyAV CCTTC 1 cut(s) 169
HpyCH4V TGCA 1 cut(s) 393
HpyF3I CTNAG 4 cut(s) 168, 324, 533, 543
Hsp92II CATG 1 cut(s) 400
HspAI GCGC 1 cut(s) 180
KspAI GTTAAC 1 cut(s) 475
Kzo9I GATC 2 cut(s) 119, 189
LpnPI CCDG 8 cut(s) 7, 34, 227, 267, 311, 337, 429, 483
MaeI CTAG 1 cut(s) 117
MalI GATC 2 cut(s) 121, 191
MboI GATC 2 cut(s) 119, 189
MboII GAAGA 5 cut(s) 53, 56, 154, 278, 469
MfeI CAATTG 1 cut(s) 337
MluCI AATT 1 cut(s) 337
MseI TTAA 3 cut(s) 12, 414, 474
MspR9I CCNGG 1 cut(s) 22
MunI CAATTG 1 cut(s) 337
MvaI CCWGG 1 cut(s) 22
MvnI CGCG 1 cut(s) 180
NdeII GATC 2 cut(s) 119, 189
NlaIII CATG 1 cut(s) 400
NlaIV GGNNCC 3 cut(s) 126, 253, 435
PfeI GAWTC 4 cut(s) 17, 486, 515, 538
PflMI CCANNNNNTGG 1 cut(s) 443
Ple19I CGATCG 1 cut(s) 192
PpuMI RGGWCCY 2 cut(s) 328, 433
PshAI GACNNNNGTC 1 cut(s) 431
Psp5II RGGWCCY 2 cut(s) 328, 433
Psp6I CCWGG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 20
PspN4I GGNNCC 3 cut(s) 126, 253, 435
PspPI GGNCC 5 cut(s) 284, 328, 400, 426, 433
PspPPI RGGWCCY 2 cut(s) 328, 433
PvuI CGATCG 1 cut(s) 192
SaqAI TTAA 3 cut(s) 12, 414, 474
Sau3AI GATC 2 cut(s) 119, 189
Sau96I GGNCC 5 cut(s) 284, 328, 400, 426, 433
ScrFI CCNGG 1 cut(s) 22
SetI ASST 4 cut(s) 178, 330, 360, 435
SinI GGWCC 5 cut(s) 284, 328, 400, 426, 433
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
Sse9I AATT 1 cut(s) 337
SsiI CCGC 1 cut(s) 151
SspI AATATT 1 cut(s) 73
SspMI CTAG 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 20
TaqI TCGA 2 cut(s) 188, 211
TaqII GACCGA 2 cut(s) 182, 443
TasI AATT 1 cut(s) 337
TfiI GAWTC 4 cut(s) 17, 486, 515, 538
Tru1I TTAA 3 cut(s) 12, 414, 474
Tru9I TTAA 3 cut(s) 12, 414, 474
TspDTI ATGAA 2 cut(s) 174, 478
TspGWI ACGGA 1 cut(s) 497
Van91I CCANNNNNTGG 1 cut(s) 443
VpaK11BI GGWCC 5 cut(s) 284, 328, 400, 426, 433
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.