Rh7AG204800

Small nuclear ribonucleoprotein SM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002981
Physical Location & Seq
Reverse (-)
18705550 .. 18709386
3837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG204800.1

Sequence Viewer

Length: 249 bp
ATGATGAGTGTCAAAAATAACACTCAGGTCCTCATCAATTGTCGTAATAACAGGAAGCTTCTTGGCCGTGTGAGGGCTTTTGATAGACATTGCAACATGGTCCTTGAGAATGTTAAGGAGATGTGGACCGAGGTCCCAAAAACTGGAAAGGGCAAGAAGAAAGCACAACCGGTTAACAAAGATAGATTCATCAGCAAGATGTTCCTCCGTGGTGATTCTGTGATTATAGTTCTTAGGAATCCTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

82

Amino Acids

9.57

Weight (kDa)

10.82

Isoelectric Point (pI)

29.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 4 - 77 4.8e-19 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 143
AcoI YGGCCR 1 cut(s) 64
AfiI CCNNNNNNNGG 2 cut(s) 73, 143
AgeI ACCGGT 1 cut(s) 169
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
AoxI GGCC 1 cut(s) 64
AsiGI ACCGGT 1 cut(s) 169
AspS9I GGNCC 4 cut(s) 28, 100, 126, 133
AsuHPI GGTGA 1 cut(s) 224
AvaII GGWCC 4 cut(s) 28, 100, 126, 133
BceAI ACGGC 1 cut(s) 51
Bme18I GGWCC 4 cut(s) 28, 100, 126, 133
BmgT120I GGNCC 4 cut(s) 28, 100, 126, 133
BmiI GGNNCC 1 cut(s) 135
BoxI GACNNNNGTC 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 125
BsaJI CCNNGG 2 cut(s) 129, 208
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 143
Bse118I RCCGGY 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 148
Bse3DI GCAATG 1 cut(s) 88
BseDI CCNNGG 2 cut(s) 129, 208
BseLI CCNNNNNNNGG 2 cut(s) 73, 143
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 38
BseNI ACTGG 1 cut(s) 148
BshFI GGCC 1 cut(s) 66
BshTI ACCGGT 1 cut(s) 169
BsiSI CCGG 1 cut(s) 170
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 2 cut(s) 73, 143
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 1 cut(s) 66
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 169
BsrI ACTGG 1 cut(s) 148
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 2 cut(s) 129, 208
BstDEI CTNAG 3 cut(s) 24, 233, 243
BstDSI CCRYGG 1 cut(s) 208
BstPAI GACNNNNGTC 1 cut(s) 131
BsuRI GGCC 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 208
Cfr10I RCCGGY 1 cut(s) 169
Cfr13I GGNCC 4 cut(s) 28, 100, 126, 133
CspAI ACCGGT 1 cut(s) 169
CviAII CATG 1 cut(s) 97
CviJI RGCY 3 cut(s) 58, 66, 77
CviKI_1 RGCY 3 cut(s) 58, 66, 77
DdeI CTNAG 3 cut(s) 24, 233, 243
EaeI YGGCCR 1 cut(s) 64
Eco47I GGWCC 4 cut(s) 28, 100, 126, 133
EcoO109I RGGNCCY 2 cut(s) 28, 133
FaeI CATG 1 cut(s) 100
FaiI YATR 2 cut(s) 98, 227
FaqI GGGAC 1 cut(s) 119
FatI CATG 1 cut(s) 96
HaeIII GGCC 1 cut(s) 66
HapII CCGG 1 cut(s) 170
Hin1II CATG 1 cut(s) 100
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 3 cut(s) 186, 215, 238
HpaI GTTAAC 1 cut(s) 175
HpaII CCGG 1 cut(s) 170
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 2 cut(s) 126, 175
Hpy8I GTNNAC 2 cut(s) 126, 175
HpyCH4V TGCA 1 cut(s) 93
HpyF3I CTNAG 3 cut(s) 24, 233, 243
Hsp92II CATG 1 cut(s) 100
KspAI GTTAAC 1 cut(s) 175
LpnPI CCDG 4 cut(s) 11, 37, 129, 183
MboII GAAGA 1 cut(s) 169
MfeI CAATTG 1 cut(s) 37
MluCI AATT 1 cut(s) 37
MnlI CCTC 4 cut(s) 41, 66, 124, 215
MseI TTAA 2 cut(s) 114, 174
MspI CCGG 1 cut(s) 170
MunI CAATTG 1 cut(s) 37
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 135
PfeI GAWTC 3 cut(s) 186, 215, 238
PflMI CCANNNNNTGG 1 cut(s) 143
PinAI ACCGGT 1 cut(s) 169
PpuMI RGGWCCY 2 cut(s) 28, 133
PshAI GACNNNNGTC 1 cut(s) 131
Psp5II RGGWCCY 2 cut(s) 28, 133
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 4 cut(s) 28, 100, 126, 133
PspPPI RGGWCCY 2 cut(s) 28, 133
SaqAI TTAA 2 cut(s) 114, 174
Sau96I GGNCC 4 cut(s) 28, 100, 126, 133
SetI ASST 3 cut(s) 30, 60, 135
SinI GGWCC 4 cut(s) 28, 100, 126, 133
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 1 cut(s) 37
TaqII GACCGA 1 cut(s) 143
TasI AATT 1 cut(s) 37
TfiI GAWTC 3 cut(s) 186, 215, 238
Tru1I TTAA 2 cut(s) 114, 174
Tru9I TTAA 2 cut(s) 114, 174
TspDTI ATGAA 1 cut(s) 178
TspGWI ACGGA 1 cut(s) 197
Van91I CCANNNNNTGG 1 cut(s) 143
VpaK11BI GGWCC 4 cut(s) 28, 100, 126, 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.