FvH4_1g13940

Small nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002981
Physical Location & Seq
Forward (+)
7675205 .. 7678735
3531 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13940.t1

Sequence Viewer

Length: 477 bp
GGTCCTTATATACCCCAACTTTGGGTAGTCCGCAGCCACAGTGTTCTCCTCGCTTCCTCTCTTAGATTTGTTTTGCTTTGGCGACGAAGCCGCAAAGGTTTGACGCAGAGTTTTTGGATCAAGTCTGGAAGACCTTGCCTCCTGCTCAGGATGTCTGGCTGGCCAATGGATGTAGATGTTGTGAAGAATGAAGAAGAGGAGTTCAATACAGGACCACTCTCCATTCTCATGATGAGTGTCAAGAATCATACACAGGTCCTCATCAATTGCCGCAACAACAGAAAACTTTTTGGCACTGTGAGAGCATTTGATCGGCACTGCAACATGGTTTTGGAAAATGTCAAGGAAATGTGGACTGAGGTTCCAAGGACTGGAAAAGGCAGGAAGAAAGCCCAAGCGGTGAACAAGGACAGGTTCATCAGCAAGATGTTTCTTCGTGGGGATTCTGTAATCATTGTTCTCAGGAATCCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

159

Amino Acids

18.38

Weight (kDa)

10.78

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 80 - 153 5.7e-18 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 371
AciI CCGC 4 cut(s) 31, 91, 271, 398
AclWI GGATC 1 cut(s) 125
AcoI YGGCCR 1 cut(s) 161
AfiI CCNNNNNNNGG 3 cut(s) 21, 22, 371
AgsI TTSAA 1 cut(s) 205
AlwI GGATC 1 cut(s) 125
AoxI GGCC 1 cut(s) 161
ApeKI GCWGC 1 cut(s) 33
AspS9I GGNCC 3 cut(s) 2, 212, 256
AsuHPI GGTGA 1 cut(s) 412
AvaII GGWCC 3 cut(s) 2, 212, 256
BalI TGGCCA 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 45
BisI GCNGC 3 cut(s) 34, 91, 271
BlsI GCNGC 3 cut(s) 35, 92, 272
Bme18I GGWCC 3 cut(s) 2, 212, 256
BmgT120I GGNCC 3 cut(s) 2, 212, 256
BmiI GGNNCC 1 cut(s) 363
BpiI GAAGAC 1 cut(s) 136
Bpu10I CCTNAGC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 365
BsaXI ACNNNNNCTCC 2 cut(s) 123, 153
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 22, 371
Bse1I ACTGG 1 cut(s) 376
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 2 cut(s) 156, 175
BseLI CCNNNNNNNGG 3 cut(s) 21, 22, 371
BseMII CTCAG 3 cut(s) 160, 348, 475
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 2 cut(s) 38, 212
BseXI GCAGC 1 cut(s) 45
BshFI GGCC 1 cut(s) 163
BslI CCNNNNNNNGG 3 cut(s) 21, 22, 371
BsnI GGCC 1 cut(s) 163
Bsp143I GATC 2 cut(s) 117, 310
BspACI CCGC 4 cut(s) 31, 91, 271, 398
BspANI GGCC 1 cut(s) 163
BspCNI CTCAG 3 cut(s) 159, 349, 474
BspHI TCATGA 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 363
BspPI GGATC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 376
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 2 cut(s) 117, 310
BssT1I CCWWGG 1 cut(s) 365
Bst4CI ACNGT 2 cut(s) 41, 298
Bst6I CTCTTC 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 4 cut(s) 62, 146, 357, 461
BstF5I GGATG 2 cut(s) 156, 175
BstKTI GATC 2 cut(s) 120, 313
BstMBI GATC 2 cut(s) 117, 310
BstV1I GCAGC 1 cut(s) 45
BstV2I GAAGAC 1 cut(s) 136
BsuRI GGCC 1 cut(s) 163
BtsCI GGATG 2 cut(s) 156, 175
BtsI GCAGTG 1 cut(s) 316
BtsIMutI CAGTG 3 cut(s) 46, 294, 316
Cac8I GCNNGC 1 cut(s) 161
CciI TCATGA 1 cut(s) 228
Cfr13I GGNCC 3 cut(s) 2, 212, 256
CseI GACGC 1 cut(s) 112
CviAII CATG 2 cut(s) 229, 325
CviJI RGCY 5 cut(s) 36, 90, 159, 163, 392
CviKI_1 RGCY 5 cut(s) 36, 90, 159, 163, 392
DdeI CTNAG 4 cut(s) 62, 146, 357, 461
DpnI GATC 2 cut(s) 119, 312
DpnII GATC 2 cut(s) 117, 310
EaeI YGGCCR 1 cut(s) 161
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 365
Eco47I GGWCC 3 cut(s) 2, 212, 256
EcoO109I RGGNCCY 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 365
ErhI CCWWGG 1 cut(s) 365
FaeI CATG 2 cut(s) 232, 328
FaiI YATR 5 cut(s) 9, 11, 230, 249, 326
FatI CATG 2 cut(s) 228, 324
Fnu4HI GCNGC 3 cut(s) 34, 91, 271
FokI GGATG 2 cut(s) 163, 182
Fsp4HI GCNGC 3 cut(s) 34, 91, 271
GluI GCNGC 3 cut(s) 34, 91, 271
HaeIII GGCC 1 cut(s) 163
HgaI GACGC 1 cut(s) 112
Hin1II CATG 2 cut(s) 232, 328
HinfI GANTC 3 cut(s) 244, 443, 466
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 2 cut(s) 354, 403
Hpy188III TCNNGA 5 cut(s) 126, 148, 229, 241, 463
Hpy8I GTNNAC 2 cut(s) 354, 403
Hpy99I CGWCG 1 cut(s) 87
HpyCH4III ACNGT 2 cut(s) 41, 298
HpyCH4V TGCA 1 cut(s) 321
HpyF3I CTNAG 4 cut(s) 62, 146, 357, 461
Hsp92II CATG 2 cut(s) 232, 328
Kzo9I GATC 2 cut(s) 117, 310
Lsp1109I GCAGC 1 cut(s) 45
MalI GATC 2 cut(s) 119, 312
MboI GATC 2 cut(s) 117, 310
MboII GAAGA 6 cut(s) 141, 196, 203, 206, 397, 425
MfeI CAATTG 1 cut(s) 265
MlsI TGGCCA 1 cut(s) 163
MluCI AATT 1 cut(s) 265
MluNI TGGCCA 1 cut(s) 163
MnlI CCTC 6 cut(s) 59, 67, 149, 190, 269, 352
Mox20I TGGCCA 1 cut(s) 163
MscI TGGCCA 1 cut(s) 163
MslI CAYNNNNRTG 1 cut(s) 227
Msp20I TGGCCA 1 cut(s) 163
MunI CAATTG 1 cut(s) 265
NdeII GATC 2 cut(s) 117, 310
NlaIII CATG 2 cut(s) 232, 328
NlaIV GGNNCC 1 cut(s) 363
PagI TCATGA 1 cut(s) 228
PfeI GAWTC 3 cut(s) 244, 443, 466
PflMI CCANNNNNTGG 1 cut(s) 371
PkrI GCNGC 3 cut(s) 35, 92, 272
PpuMI RGGWCCY 1 cut(s) 256
Psp5II RGGWCCY 1 cut(s) 256
PspN4I GGNNCC 1 cut(s) 363
PspPI GGNCC 3 cut(s) 2, 212, 256
PspPPI RGGWCCY 1 cut(s) 256
PsrI GAACNNNNNNTAC 2 cut(s) 441, 473
RseI CAYNNNNRTG 1 cut(s) 227
SatI GCNGC 3 cut(s) 34, 91, 271
Sau3AI GATC 2 cut(s) 117, 310
Sau96I GGNCC 3 cut(s) 2, 212, 256
SetI ASST 5 cut(s) 100, 136, 258, 363, 416
SinI GGWCC 3 cut(s) 2, 212, 256
SmiMI CAYNNNNRTG 1 cut(s) 227
Sse9I AATT 1 cut(s) 265
SsiI CCGC 4 cut(s) 31, 91, 271, 398
StyI CCWWGG 1 cut(s) 365
TaaI ACNGT 2 cut(s) 41, 298
TasI AATT 1 cut(s) 265
TauI GCSGC 2 cut(s) 93, 273
TfiI GAWTC 3 cut(s) 244, 443, 466
TscAI CASTG 3 cut(s) 46, 301, 323
TseI GCWGC 1 cut(s) 33
TspDTI ATGAA 2 cut(s) 204, 406
TspRI CASTG 3 cut(s) 46, 301, 323
Van91I CCANNNNNTGG 1 cut(s) 371
VpaK11BI GGWCC 3 cut(s) 2, 212, 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.