FvH4_5g18870

Small nuclear ribonucleoprotein SM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002981
Physical Location & Seq
Reverse (-)
10846348 .. 10849641
3294 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18870.t1

Sequence Viewer

Length: 324 bp
ATGAGTCGGCCAATGGAGGAAGATGGTGCCAAGAATGAGGAAGAGGAGTTCAATACTGGACCACTTTCTGTTCTGATGATGAGTGTCAAAAATAACACTCAGGTCCTCATCAATTGTCGTAATAACAGGAAGCTTCTTGGCCGTGTGAGGGCTTTTGATAGGCATTGCAACATGGTTCTTGAGAATGTTAAGGAGATGTGGACTGAGGTGCCAAAAACTGGTAAGGGAAAGAAGAAAGCGCAACCGGTTAACAAAGATAGATTCATCAGCAAGATGTTCCTCCGCGGTGATTCTGTGATTATTGTTCTTAGGAATCCTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

108

Amino Acids

12.36

Weight (kDa)

9.88

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 28 - 102 1.1e-18 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 26, 208
AccB7I CCANNNNNTGG 1 cut(s) 218
AccII CGCG 1 cut(s) 285
AciI CCGC 2 cut(s) 283, 285
AcoI YGGCCR 2 cut(s) 8, 139
AfiI CCNNNNNNNGG 2 cut(s) 148, 218
AgeI ACCGGT 1 cut(s) 244
AgsI TTSAA 1 cut(s) 52
AloI GAACNNNNNNTCC 2 cut(s) 32, 64
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
AoxI GGCC 2 cut(s) 8, 139
AsiGI ACCGGT 1 cut(s) 244
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 2 cut(s) 59, 103
AsuHPI GGTGA 1 cut(s) 299
AvaII GGWCC 2 cut(s) 59, 103
BanI GGYRCC 2 cut(s) 26, 208
BccI CCATC 1 cut(s) 17
BceAI ACGGC 1 cut(s) 126
Bme18I GGWCC 2 cut(s) 59, 103
BmgT120I GGNCC 2 cut(s) 59, 103
BmiI GGNNCC 2 cut(s) 28, 210
BpuEI CTTGAG 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 283
BsaWI WCCGGW 1 cut(s) 244
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 218
Bse118I RCCGGY 1 cut(s) 244
Bse1I ACTGG 2 cut(s) 61, 223
Bse3DI GCAATG 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 283
BseLI CCNNNNNNNGG 2 cut(s) 148, 218
BseMI GCAATG 1 cut(s) 163
BseMII CTCAG 2 cut(s) 113, 195
BseNI ACTGG 2 cut(s) 61, 223
BseRI GAGGAG 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 285
BshFI GGCC 2 cut(s) 10, 141
BshNI GGYRCC 2 cut(s) 26, 208
BshTI ACCGGT 1 cut(s) 244
BsiSI CCGG 1 cut(s) 245
BslI CCNNNNNNNGG 2 cut(s) 148, 218
BsnI GGCC 2 cut(s) 10, 141
BspACI CCGC 2 cut(s) 283, 285
BspANI GGCC 2 cut(s) 10, 141
BspCNI CTCAG 2 cut(s) 112, 196
BspFNI CGCG 1 cut(s) 285
BspLI GGNNCC 2 cut(s) 28, 210
BspT107I GGYRCC 2 cut(s) 26, 208
BsrDI GCAATG 1 cut(s) 163
BsrFI RCCGGY 1 cut(s) 244
BsrI ACTGG 2 cut(s) 61, 223
BssAI RCCGGY 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 283
Bst6I CTCTTC 1 cut(s) 36
BstDEI CTNAG 4 cut(s) 99, 204, 308, 318
BstDSI CCRYGG 1 cut(s) 283
BstFNI CGCG 1 cut(s) 285
BstHHI GCGC 1 cut(s) 241
BstUI CGCG 1 cut(s) 285
BsuRI GGCC 2 cut(s) 10, 141
BtgI CCRYGG 1 cut(s) 283
CfoI GCGC 1 cut(s) 241
Cfr10I RCCGGY 1 cut(s) 244
Cfr13I GGNCC 2 cut(s) 59, 103
Cfr42I CCGCGG 1 cut(s) 286
CspAI ACCGGT 1 cut(s) 244
CviAII CATG 1 cut(s) 172
CviJI RGCY 4 cut(s) 10, 133, 141, 152
CviKI_1 RGCY 4 cut(s) 10, 133, 141, 152
DdeI CTNAG 4 cut(s) 99, 204, 308, 318
EaeI YGGCCR 2 cut(s) 8, 139
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco47I GGWCC 2 cut(s) 59, 103
EcoO109I RGGNCCY 1 cut(s) 103
FaeI CATG 1 cut(s) 175
FaiI YATR 1 cut(s) 173
FatI CATG 1 cut(s) 171
GlaI GCGC 1 cut(s) 240
HaeIII GGCC 2 cut(s) 10, 141
HapII CCGG 1 cut(s) 245
HhaI GCGC 1 cut(s) 241
Hin1II CATG 1 cut(s) 175
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 4 cut(s) 4, 261, 290, 313
HpaI GTTAAC 1 cut(s) 250
HpaII CCGG 1 cut(s) 245
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 2 cut(s) 201, 250
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 2 cut(s) 201, 250
HpyCH4V TGCA 1 cut(s) 168
HpyF3I CTNAG 4 cut(s) 99, 204, 308, 318
Hsp92II CATG 1 cut(s) 175
HspAI GCGC 1 cut(s) 239
KspAI GTTAAC 1 cut(s) 250
KspI CCGCGG 1 cut(s) 286
LpnPI CCDG 5 cut(s) 42, 86, 112, 204, 258
MboII GAAGA 3 cut(s) 32, 53, 244
MfeI CAATTG 1 cut(s) 112
MluCI AATT 1 cut(s) 112
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 7 cut(s) 10, 31, 37, 116, 141, 199, 290
MseI TTAA 2 cut(s) 189, 249
MspA1I CMGCKG 1 cut(s) 285
MspI CCGG 1 cut(s) 245
MunI CAATTG 1 cut(s) 112
MvnI CGCG 1 cut(s) 285
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 2 cut(s) 28, 210
PfeI GAWTC 3 cut(s) 261, 290, 313
PflMI CCANNNNNTGG 1 cut(s) 218
PinAI ACCGGT 1 cut(s) 244
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PpuMI RGGWCCY 1 cut(s) 103
Psp5II RGGWCCY 1 cut(s) 103
PspN4I GGNNCC 2 cut(s) 28, 210
PspPI GGNCC 2 cut(s) 59, 103
PspPPI RGGWCCY 1 cut(s) 103
SacII CCGCGG 1 cut(s) 286
SaqAI TTAA 2 cut(s) 189, 249
Sau96I GGNCC 2 cut(s) 59, 103
SchI GAGTC 1 cut(s) 13
SetI ASST 3 cut(s) 105, 135, 210
Sfr303I CCGCGG 1 cut(s) 286
SgrBI CCGCGG 1 cut(s) 286
SinI GGWCC 2 cut(s) 59, 103
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 1 cut(s) 112
SsiI CCGC 2 cut(s) 283, 285
TasI AATT 1 cut(s) 112
TfiI GAWTC 3 cut(s) 261, 290, 313
Tru1I TTAA 2 cut(s) 189, 249
Tru9I TTAA 2 cut(s) 189, 249
TspDTI ATGAA 1 cut(s) 253
Van91I CCANNNNNTGG 1 cut(s) 218
VpaK11BI GGWCC 2 cut(s) 59, 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.