MD15G1267000.v1.1

Small nuclear ribonucleoprotein SM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0002981
Physical Location & Seq
Forward (+)
22963747 .. 22966737
2991 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1267000.v1.1.491

Sequence Viewer

Length: 324 bp
ATGAGCCGACCAATGGAGGAAGATGGTGCCAAGAACGAGGAAGAGGAATTCAACACAGGGCCACTTTCTGTCCTTATGATGAGTGTAAAAAATAATACTCAGGTGCTCATCAATTGCCGTAACAACCGAAAGCTTCTTGGCCGTGTGAGAGCATTTGACAGGCATTGCAACATGGTTCTGGAAAATGTCAGGGAGATGTGGACTGAGGTGCCGAGGACTGGAAAAGGCAAGAAAAAGGCCCAGCCGGTTAACAAAGACAGGTTCATCAGCAAGATGTTTCTCCGTGGGGACTCTGTTATCATCGTTCTTAGGAATCCGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

108

Amino Acids

12.42

Weight (kDa)

10.01

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 28 - 102 1.9e-18 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 26, 208
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 1 cut(s) 47
AfiI CCNNNNNNNGG 2 cut(s) 13, 218
AgsI TTSAA 1 cut(s) 52
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw21I GWGCWC 1 cut(s) 108
AoxI GGCC 3 cut(s) 59, 139, 237
ApoI RAATTY 1 cut(s) 47
AspS9I GGNCC 2 cut(s) 59, 238
BanI GGYRCC 2 cut(s) 26, 208
Bbv12I GWGCWC 1 cut(s) 108
BccI CCATC 1 cut(s) 17
BceAI ACGGC 2 cut(s) 102, 126
BmgT120I GGNCC 2 cut(s) 59, 238
BmiI GGNNCC 2 cut(s) 28, 210
BsaJI CCNNGG 2 cut(s) 212, 283
Bsc4I CCNNNNNNNGG 2 cut(s) 13, 218
Bse118I RCCGGY 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 223
Bse3DI GCAATG 1 cut(s) 163
BseDI CCNNGG 2 cut(s) 212, 283
BseLI CCNNNNNNNGG 2 cut(s) 13, 218
BseMI GCAATG 1 cut(s) 163
BseMII CTCAG 2 cut(s) 113, 195
BseNI ACTGG 1 cut(s) 223
BseYI CCCAGC 1 cut(s) 240
BshFI GGCC 3 cut(s) 61, 141, 239
BshNI GGYRCC 2 cut(s) 26, 208
BsiHKAI GWGCWC 1 cut(s) 108
BsiSI CCGG 1 cut(s) 245
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 2 cut(s) 13, 218
BsmFI GGGAC 1 cut(s) 302
BsnI GGCC 3 cut(s) 61, 141, 239
Bsp1286I GDGCHC 1 cut(s) 108
BspANI GGCC 3 cut(s) 61, 141, 239
BspCNI CTCAG 2 cut(s) 112, 196
BspLI GGNNCC 2 cut(s) 28, 210
BspT107I GGYRCC 2 cut(s) 26, 208
BsrDI GCAATG 1 cut(s) 163
BsrFI RCCGGY 1 cut(s) 244
BsrI ACTGG 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 244
BssECI CCNNGG 2 cut(s) 212, 283
Bst6I CTCTTC 1 cut(s) 36
BstDEI CTNAG 3 cut(s) 99, 204, 308
BstDSI CCRYGG 1 cut(s) 283
BsuRI GGCC 3 cut(s) 61, 141, 239
BtgI CCRYGG 1 cut(s) 283
Cfr10I RCCGGY 1 cut(s) 244
Cfr13I GGNCC 2 cut(s) 59, 238
CviAII CATG 1 cut(s) 172
CviJI RGCY 6 cut(s) 6, 61, 133, 141, 239, 244
CviKI_1 RGCY 6 cut(s) 6, 61, 133, 141, 239, 244
DdeI CTNAG 3 cut(s) 99, 204, 308
EaeI YGGCCR 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
EcoRI GAATTC 1 cut(s) 47
FaeI CATG 1 cut(s) 175
FaiI YATR 2 cut(s) 77, 173
FaqI GGGAC 1 cut(s) 302
FatI CATG 1 cut(s) 171
GsaI CCCAGC 1 cut(s) 244
HaeIII GGCC 3 cut(s) 61, 141, 239
HapII CCGG 1 cut(s) 245
Hin1II CATG 1 cut(s) 175
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 2 cut(s) 290, 313
HpaI GTTAAC 1 cut(s) 250
HpaII CCGG 1 cut(s) 245
Hpy166II GTNNAC 2 cut(s) 201, 250
Hpy188I TCNGA 1 cut(s) 318
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 2 cut(s) 201, 250
HpyCH4V TGCA 1 cut(s) 168
HpyF3I CTNAG 3 cut(s) 99, 204, 308
Hsp92II CATG 1 cut(s) 175
KspAI GTTAAC 1 cut(s) 250
LpnPI CCDG 9 cut(s) 42, 86, 145, 164, 175, 204, 244, 254, 258
MaeIII GTNAC 1 cut(s) 119
MboII GAAGA 2 cut(s) 32, 53
MfeI CAATTG 1 cut(s) 112
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 2 cut(s) 47, 112
MlyI GAGTC 1 cut(s) 284
MnlI CCTC 5 cut(s) 10, 31, 37, 199, 207
MseI TTAA 1 cut(s) 249
MspI CCGG 1 cut(s) 245
MunI CAATTG 1 cut(s) 112
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 2 cut(s) 28, 210
NmeAIII GCCGAG 1 cut(s) 237
PfeI GAWTC 1 cut(s) 313
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
PspFI CCCAGC 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 28, 210
PspPI GGNCC 2 cut(s) 59, 238
SaqAI TTAA 1 cut(s) 249
Sau96I GGNCC 2 cut(s) 59, 238
SchI GAGTC 1 cut(s) 284
SduI GDGCHC 1 cut(s) 108
SetI ASST 4 cut(s) 105, 135, 210, 263
Sse9I AATT 2 cut(s) 47, 112
TasI AATT 2 cut(s) 47, 112
TfiI GAWTC 1 cut(s) 313
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TspDTI ATGAA 1 cut(s) 253
TspGWI ACGGA 1 cut(s) 272
XapI RAATTY 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.