Rh6CG171300

Small nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002981
Physical Location & Seq
Reverse (-)
23728245 .. 23731534
3290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG171300.1

Sequence Viewer

Length: 309 bp
ATGGTCTCACCTGACTACTTTTATATTTTAAACCCCCAACTTTGTACACCTGTTTTGATGATTGAGCTGTGTTGCTTATTCATTCTTCGACTGCTGCAGGGTGTCAGGAATGAAGAAGAGGAGTTCAGTACTGGACCACTCTCGATTCTTATAATGAGTGTCAAGAATCATACACAGGTCCTCATCAATTGCCGCAACAATAGAAAGCTTTTTGGCACTATGAGAGCATTTGATCGGCATTGCAACATGGTTCTGGAAAATGTCAAGGAGATGTGGACTGAGGTACTTTTTTTCAATCTCTGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

102

Amino Acids

12.04

Weight (kDa)

6.07

Isoelectric Point (pI)

53.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 54 - 94 1.7e-12 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 152
AciI CCGC 1 cut(s) 193
AfaI GTAC 3 cut(s) 46, 130, 285
AgsI TTSAA 1 cut(s) 295
AluBI AGCT 2 cut(s) 67, 208
AluI AGCT 2 cut(s) 67, 208
Alw26I GTCTC 1 cut(s) 10
ApeKI GCWGC 1 cut(s) 94
AspS9I GGNCC 2 cut(s) 134, 178
AvaII GGWCC 2 cut(s) 134, 178
BbvI GCAGC 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 10
BfmI CTRYAG 1 cut(s) 95
BisI GCNGC 2 cut(s) 95, 193
BlsI GCNGC 2 cut(s) 96, 194
BmcAI AGTACT 1 cut(s) 130
Bme18I GGWCC 2 cut(s) 134, 178
BmgT120I GGNCC 2 cut(s) 134, 178
BsaI GGTCTC 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 238
BseMI GCAATG 1 cut(s) 238
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 10
Bso31I GGTCTC 1 cut(s) 10
Bsp1407I TGTACA 1 cut(s) 44
Bsp143I GATC 1 cut(s) 232
BspACI CCGC 1 cut(s) 193
BspCNI CTCAG 1 cut(s) 271
BspMAI CTGCAG 1 cut(s) 99
BspTNI GGTCTC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 238
BsrGI TGTACA 1 cut(s) 44
BsrI ACTGG 1 cut(s) 136
BssMI GATC 1 cut(s) 232
Bst6I CTCTTC 1 cut(s) 111
BstAUI TGTACA 1 cut(s) 44
BstDEI CTNAG 1 cut(s) 279
BstKTI GATC 1 cut(s) 235
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 1 cut(s) 232
BstSFI CTRYAG 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 81
Cfr13I GGNCC 2 cut(s) 134, 178
Csp6I GTAC 3 cut(s) 45, 129, 284
CviAII CATG 1 cut(s) 247
CviJI RGCY 2 cut(s) 67, 208
CviKI_1 RGCY 2 cut(s) 67, 208
CviQI GTAC 3 cut(s) 45, 129, 284
DdeI CTNAG 1 cut(s) 279
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
DraI TTTAAA 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 10
Eco47I GGWCC 2 cut(s) 134, 178
EcoO109I RGGNCCY 1 cut(s) 178
FaeI CATG 1 cut(s) 250
FaiI YATR 5 cut(s) 24, 152, 171, 221, 248
FatI CATG 1 cut(s) 246
Fnu4HI GCNGC 2 cut(s) 95, 193
Fsp4HI GCNGC 2 cut(s) 95, 193
GluI GCNGC 2 cut(s) 95, 193
Hin1II CATG 1 cut(s) 250
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 2 cut(s) 145, 166
Hpy166II GTNNAC 2 cut(s) 47, 276
Hpy188III TCNNGA 4 cut(s) 106, 142, 163, 254
Hpy8I GTNNAC 2 cut(s) 47, 276
HpyCH4V TGCA 2 cut(s) 97, 243
HpyF3I CTNAG 1 cut(s) 279
Hsp92II CATG 1 cut(s) 250
Kzo9I GATC 1 cut(s) 232
LpnPI CCDG 7 cut(s) 24, 63, 83, 91, 117, 161, 239
Lsp1109I GCAGC 1 cut(s) 81
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 3 cut(s) 77, 125, 128
MfeI CAATTG 1 cut(s) 187
MluCI AATT 1 cut(s) 187
MnlI CCTC 3 cut(s) 112, 191, 274
MseI TTAA 1 cut(s) 29
MunI CAATTG 1 cut(s) 187
NdeII GATC 1 cut(s) 232
NlaIII CATG 1 cut(s) 250
PfeI GAWTC 2 cut(s) 145, 166
PkrI GCNGC 2 cut(s) 96, 194
PpuMI RGGWCCY 1 cut(s) 178
PsiI TTATAA 1 cut(s) 152
Psp5II RGGWCCY 1 cut(s) 178
PspPI GGNCC 2 cut(s) 134, 178
PspPPI RGGWCCY 1 cut(s) 178
PstI CTGCAG 1 cut(s) 99
RsaI GTAC 3 cut(s) 46, 130, 285
RsaNI GTAC 3 cut(s) 45, 129, 284
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 2 cut(s) 95, 193
Sau3AI GATC 1 cut(s) 232
Sau96I GGNCC 2 cut(s) 134, 178
ScaI AGTACT 1 cut(s) 130
SetI ASST 6 cut(s) 13, 52, 69, 180, 210, 285
SfcI CTRYAG 1 cut(s) 95
SinI GGWCC 2 cut(s) 134, 178
Sse9I AATT 1 cut(s) 187
SsiI CCGC 1 cut(s) 193
TaqI TCGA 2 cut(s) 88, 143
TasI AATT 1 cut(s) 187
TatI WGTACW 2 cut(s) 44, 128
TauI GCSGC 1 cut(s) 195
TfiI GAWTC 2 cut(s) 145, 166
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TseI GCWGC 1 cut(s) 94
TspDTI ATGAA 2 cut(s) 70, 126
VpaK11BI GGWCC 2 cut(s) 134, 178
ZrmI AGTACT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.