pycom06g04920

Small nuclear ribonucleoprotein SM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0002981
Physical Location & Seq
Forward (+)
6602291 .. 6603442
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g04920.3

Sequence Viewer

Length: 312 bp
ATGGAGGTAGATGGTATCAAGAATGAGGAAGAGGAATTTAACAACGGACCACTTTCTGTTCTTCTGATGAGTGTAAAGAATAATACTCAGGTCCTCATCAACTGTCGTAATAACAGGAAGCTCCTTGGCCGTGTGAGAGCGTTTGATAGACATTGCAACATGGTGCTTGAAAACGTTAGAGAGATGTGGACCGAGGTACCGAAGACTGGAAAAGGCAAGAAGAAGGCCCAACCTGTCAACAAAGATAGATTCATCAGTAAGATGTTCCTCCGCGGAGATTCTGTCATTATTGTCCTTAGGAATCCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

104

Amino Acids

11.93

Weight (kDa)

9.94

Isoelectric Point (pI)

31.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 196
AccB1I GGYRCC 1 cut(s) 196
AccII CGCG 1 cut(s) 273
AciI CCGC 2 cut(s) 271, 273
AclI AACGTT 1 cut(s) 174
AcoI YGGCCR 1 cut(s) 127
AcsI RAATTY 1 cut(s) 35
AfaI GTAC 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 1 cut(s) 170
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
AoxI GGCC 2 cut(s) 127, 225
ApoI RAATTY 1 cut(s) 35
Asp718I GGTACC 1 cut(s) 196
AspS9I GGNCC 4 cut(s) 47, 91, 189, 226
AvaII GGWCC 3 cut(s) 47, 91, 189
AxyI CCTNAGG 1 cut(s) 296
BaeI ACNNNNGTAYC 2 cut(s) 180, 213
BanI GGYRCC 1 cut(s) 196
BbsI GAAGAC 1 cut(s) 209
BccI CCATC 1 cut(s) 5
BceAI ACGGC 1 cut(s) 114
Bme18I GGWCC 3 cut(s) 47, 91, 189
BmgT120I GGNCC 4 cut(s) 47, 91, 189, 226
BmiI GGNNCC 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 209
BsaJI CCNNGG 3 cut(s) 124, 192, 271
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 211
Bse21I CCTNAGG 1 cut(s) 296
Bse3DI GCAATG 1 cut(s) 151
BseDI CCNNGG 3 cut(s) 124, 192, 271
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 211
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 2 cut(s) 129, 227
BshNI GGYRCC 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 206
BsnI GGCC 2 cut(s) 129, 227
BspACI CCGC 2 cut(s) 271, 273
BspANI GGCC 2 cut(s) 129, 227
BspCNI CTCAG 1 cut(s) 100
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 198
BspT107I GGYRCC 1 cut(s) 196
BsrDI GCAATG 1 cut(s) 151
BsrI ACTGG 1 cut(s) 211
BssECI CCNNGG 3 cut(s) 124, 192, 271
BssT1I CCWWGG 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 104
Bst6I CTCTTC 1 cut(s) 24
BstDEI CTNAG 2 cut(s) 87, 296
BstDSI CCRYGG 1 cut(s) 271
BstFNI CGCG 1 cut(s) 273
BstUI CGCG 1 cut(s) 273
BstV2I GAAGAC 1 cut(s) 209
Bsu36I CCTNAGG 1 cut(s) 296
BsuRI GGCC 2 cut(s) 129, 227
BtgI CCRYGG 1 cut(s) 271
Cfr13I GGNCC 4 cut(s) 47, 91, 189, 226
Cfr42I CCGCGG 1 cut(s) 274
Csp6I GTAC 1 cut(s) 197
CviAII CATG 1 cut(s) 160
CviJI RGCY 3 cut(s) 121, 129, 227
CviKI_1 RGCY 3 cut(s) 121, 129, 227
CviQI GTAC 1 cut(s) 197
DdeI CTNAG 2 cut(s) 87, 296
EaeI YGGCCR 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 124
Eco47I GGWCC 3 cut(s) 47, 91, 189
Eco81I CCTNAGG 1 cut(s) 296
EcoO109I RGGNCCY 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 124
FaeI CATG 1 cut(s) 163
FaiI YATR 1 cut(s) 161
FatI CATG 1 cut(s) 159
HaeIII GGCC 2 cut(s) 129, 227
Hin1II CATG 1 cut(s) 163
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 3 cut(s) 249, 278, 301
Hpy166II GTNNAC 2 cut(s) 189, 238
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 1 cut(s) 19
Hpy8I GTNNAC 2 cut(s) 189, 238
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 1 cut(s) 156
HpyF3I CTNAG 2 cut(s) 87, 296
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 1 cut(s) 163
KpnI GGTACC 1 cut(s) 200
KspI CCGCGG 1 cut(s) 274
LmnI GCTCC 1 cut(s) 126
LpnPI CCDG 4 cut(s) 74, 100, 192, 246
MaeII ACGT 1 cut(s) 174
MboII GAAGA 4 cut(s) 41, 53, 214, 232
MluCI AATT 1 cut(s) 35
MnlI CCTC 5 cut(s) 19, 25, 104, 187, 278
MseI TTAA 1 cut(s) 39
MspA1I CMGCKG 1 cut(s) 273
MvnI CGCG 1 cut(s) 273
NlaIII CATG 1 cut(s) 163
NlaIV GGNNCC 1 cut(s) 198
PfeI GAWTC 3 cut(s) 249, 278, 301
PpuMI RGGWCCY 1 cut(s) 91
Psp1406I AACGTT 1 cut(s) 174
Psp5II RGGWCCY 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 4 cut(s) 47, 91, 189, 226
PspPPI RGGWCCY 1 cut(s) 91
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
SacII CCGCGG 1 cut(s) 274
SaqAI TTAA 1 cut(s) 39
Sau96I GGNCC 4 cut(s) 47, 91, 189, 226
SetI ASST 6 cut(s) 9, 93, 123, 177, 198, 235
Sfr303I CCGCGG 1 cut(s) 274
SgrBI CCGCGG 1 cut(s) 274
SinI GGWCC 3 cut(s) 47, 91, 189
Sse9I AATT 1 cut(s) 35
SsiI CCGC 2 cut(s) 271, 273
StyI CCWWGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 104
TaiI ACGT 1 cut(s) 177
TaqII GACCGA 1 cut(s) 206
TasI AATT 1 cut(s) 35
TfiI GAWTC 3 cut(s) 249, 278, 301
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TspDTI ATGAA 1 cut(s) 241
TspGWI ACGGA 1 cut(s) 60
VpaK11BI GGWCC 3 cut(s) 47, 91, 189
XapI RAATTY 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.