Rh2CG159500

Small nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002981
Physical Location & Seq
Forward (+)
13927793 .. 13930971
3179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG159500.1

Sequence Viewer

Length: 342 bp
ATGATTGAGCTGTGTTGCTTATTCATTCTTCGACTGCTACAGGGTGCCAGGAATGAAGAAGAGGAGTTCAATACAGGACCACTCTCGATTCTCATGATGAGTGTCAAGAATCATACACAGGTCCTCATCAATTGCCGCAACAACAGAAAGCTTTTTGGCACTGTGAGAGCATTTGATCGGCACTGCAACATGGTTCTGGAAAATGTCAAGGAGATGTGGACTGAGGTTCCAAGGACCGGAAAAGGCAAGAAGAAAGCCCAAGCGGTAAACAAAGACAGGTTCATCAGCAAGATGTTTATCCGTGGAGATTCTGTAATCATCGTTCTCAGGAATCCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

113

Amino Acids

13.12

Weight (kDa)

9.89

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 35 - 108 9.4e-19 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 44
AciI CCGC 2 cut(s) 136, 263
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 1 cut(s) 70
AjnI CCWGG 1 cut(s) 47
AluBI AGCT 2 cut(s) 10, 151
AluI AGCT 2 cut(s) 10, 151
AspS9I GGNCC 3 cut(s) 77, 121, 234
AvaII GGWCC 3 cut(s) 77, 121, 234
BanI GGYRCC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 49
BfmI CTRYAG 1 cut(s) 38
BisI GCNGC 1 cut(s) 136
BlsI GCNGC 1 cut(s) 137
Bme1390I CCNGG 1 cut(s) 49
Bme18I GGWCC 3 cut(s) 77, 121, 234
BmgT120I GGNCC 3 cut(s) 77, 121, 234
BmiI GGNNCC 2 cut(s) 46, 228
BmrFI CCNGG 1 cut(s) 49
BsaBI GATNNNNATC 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 230, 301
BsaWI WCCGGW 1 cut(s) 236
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse8I GATNNNNATC 1 cut(s) 296
BseBI CCWGG 1 cut(s) 49
BseDI CCNNGG 2 cut(s) 230, 301
BseJI GATNNNNATC 1 cut(s) 296
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMII CTCAG 2 cut(s) 213, 340
BseRI GAGGAG 1 cut(s) 77
BshNI GGYRCC 1 cut(s) 44
BsiSI CCGG 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 236
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 2 cut(s) 136, 263
BspCNI CTCAG 2 cut(s) 214, 339
BspHI TCATGA 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 46, 228
BspT107I GGYRCC 1 cut(s) 44
BssECI CCNNGG 2 cut(s) 230, 301
BssMI GATC 1 cut(s) 175
BssT1I CCWWGG 1 cut(s) 230
Bst2UI CCWGG 1 cut(s) 49
Bst4CI ACNGT 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 54
BstDEI CTNAG 2 cut(s) 222, 326
BstDSI CCRYGG 1 cut(s) 301
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstNI CCWGG 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 47
BstSFI CTRYAG 1 cut(s) 38
BtgI CCRYGG 1 cut(s) 301
BtsI GCAGTG 1 cut(s) 181
BtsIMutI CAGTG 2 cut(s) 159, 181
CciI TCATGA 1 cut(s) 93
Cfr13I GGNCC 3 cut(s) 77, 121, 234
CviAII CATG 2 cut(s) 94, 190
CviJI RGCY 3 cut(s) 10, 151, 257
CviKI_1 RGCY 3 cut(s) 10, 151, 257
DdeI CTNAG 2 cut(s) 222, 326
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 230
Eco47I GGWCC 3 cut(s) 77, 121, 234
EcoO109I RGGNCCY 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 47
EcoT14I CCWWGG 1 cut(s) 230
ErhI CCWWGG 1 cut(s) 230
FaeI CATG 2 cut(s) 97, 193
FaiI YATR 3 cut(s) 95, 114, 191
FatI CATG 2 cut(s) 93, 189
Fnu4HI GCNGC 1 cut(s) 136
Fsp4HI GCNGC 1 cut(s) 136
GluI GCNGC 1 cut(s) 136
HapII CCGG 1 cut(s) 237
Hin1II CATG 2 cut(s) 97, 193
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 4 cut(s) 88, 109, 308, 331
HpaII CCGG 1 cut(s) 237
Hpy166II GTNNAC 2 cut(s) 219, 268
Hpy188III TCNNGA 5 cut(s) 85, 94, 106, 197, 328
Hpy8I GTNNAC 2 cut(s) 219, 268
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 1 cut(s) 186
HpyF3I CTNAG 2 cut(s) 222, 326
Hsp92II CATG 2 cut(s) 97, 193
Kzo9I GATC 1 cut(s) 175
LpnPI CCDG 9 cut(s) 26, 34, 60, 61, 104, 182, 250, 262, 313
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 4 cut(s) 20, 68, 71, 262
MfeI CAATTG 1 cut(s) 130
MluCI AATT 1 cut(s) 130
MnlI CCTC 3 cut(s) 55, 134, 217
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 49
MunI CAATTG 1 cut(s) 130
MvaI CCWGG 1 cut(s) 49
NdeII GATC 1 cut(s) 175
NlaIII CATG 2 cut(s) 97, 193
NlaIV GGNNCC 2 cut(s) 46, 228
PagI TCATGA 1 cut(s) 93
PfeI GAWTC 4 cut(s) 88, 109, 308, 331
PkrI GCNGC 1 cut(s) 137
PpuMI RGGWCCY 1 cut(s) 121
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 47
PspN4I GGNNCC 2 cut(s) 46, 228
PspPI GGNCC 3 cut(s) 77, 121, 234
PspPPI RGGWCCY 1 cut(s) 121
PsrI GAACNNNNNNTAC 2 cut(s) 306, 338
SatI GCNGC 1 cut(s) 136
Sau3AI GATC 1 cut(s) 175
Sau96I GGNCC 3 cut(s) 77, 121, 234
ScrFI CCNGG 1 cut(s) 49
SetI ASST 5 cut(s) 12, 123, 153, 228, 281
SfcI CTRYAG 1 cut(s) 38
SinI GGWCC 3 cut(s) 77, 121, 234
Sse9I AATT 1 cut(s) 130
SsiI CCGC 2 cut(s) 136, 263
StyD4I CCNGG 1 cut(s) 47
StyI CCWWGG 1 cut(s) 230
TaaI ACNGT 1 cut(s) 163
TaqI TCGA 2 cut(s) 31, 86
TasI AATT 1 cut(s) 130
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 4 cut(s) 88, 109, 308, 331
TscAI CASTG 2 cut(s) 166, 188
TspDTI ATGAA 3 cut(s) 13, 69, 271
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 2 cut(s) 166, 188
VpaK11BI GGWCC 3 cut(s) 77, 121, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.