MD06G1058300.v1.1

Small nuclear ribonucleoprotein SM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0002981
Physical Location & Seq
Reverse (-)
9028659 .. 9029631
973 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1058300.v1.1.491

Sequence Viewer

Length: 255 bp
ATGAGCGTAAAGAATAATACTCAGGTCCTCATCAACTGTCGTAATAACAGGAAGCTCCTTGGCCGTGTGAGAGCATTTGATAGACATTGCAACATGGTGCTTGAAAACGTTAGAGAGATGTGGACCGAGGTACCGAAGACTGGAAAAGGCAAGAAGAAGGCCCAATCTGTCAACAAAGATAGATTCATGAGTAAGATGTTCCTCCGCGGAGATTCTGTGTCATTATTGTCCTTAGGAATCCAAAATGACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

85

Amino Acids

9.71

Weight (kDa)

10.5

Isoelectric Point (pI)

32.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 4 - 77 2.1e-18 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 130
AccB1I GGYRCC 1 cut(s) 130
AccII CGCG 1 cut(s) 207
AciI CCGC 2 cut(s) 205, 207
AclI AACGTT 1 cut(s) 108
AcoI YGGCCR 1 cut(s) 61
AfaI GTAC 1 cut(s) 132
AfiI CCNNNNNNNGG 1 cut(s) 140
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 1 cut(s) 104
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
AoxI GGCC 2 cut(s) 61, 159
Asp718I GGTACC 1 cut(s) 130
AspS9I GGNCC 3 cut(s) 25, 123, 160
AvaII GGWCC 2 cut(s) 25, 123
AxyI CCTNAGG 1 cut(s) 232
BaeI ACNNNNGTAYC 2 cut(s) 114, 147
BanI GGYRCC 1 cut(s) 130
BbsI GAAGAC 1 cut(s) 143
BceAI ACGGC 1 cut(s) 48
Bme18I GGWCC 2 cut(s) 25, 123
BmgT120I GGNCC 3 cut(s) 25, 123, 160
BmiI GGNNCC 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 143
BsaJI CCNNGG 3 cut(s) 58, 126, 205
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse1I ACTGG 1 cut(s) 145
Bse21I CCTNAGG 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 85
BseDI CCNNGG 3 cut(s) 58, 126, 205
BseLI CCNNNNNNNGG 1 cut(s) 140
BseMI GCAATG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 145
Bsh1236I CGCG 1 cut(s) 207
BshFI GGCC 2 cut(s) 63, 161
BshNI GGYRCC 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 140
BsnI GGCC 2 cut(s) 63, 161
BspACI CCGC 2 cut(s) 205, 207
BspANI GGCC 2 cut(s) 63, 161
BspCNI CTCAG 1 cut(s) 34
BspFNI CGCG 1 cut(s) 207
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 132
BspT107I GGYRCC 1 cut(s) 130
BsrDI GCAATG 1 cut(s) 85
BsrI ACTGG 1 cut(s) 145
BssECI CCNNGG 3 cut(s) 58, 126, 205
BssT1I CCWWGG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 38
BstDEI CTNAG 2 cut(s) 21, 232
BstDSI CCRYGG 1 cut(s) 205
BstFNI CGCG 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 253
BstUI CGCG 1 cut(s) 207
BstV2I GAAGAC 1 cut(s) 143
Bsu36I CCTNAGG 1 cut(s) 232
BsuRI GGCC 2 cut(s) 63, 161
BtgI CCRYGG 1 cut(s) 205
CciI TCATGA 1 cut(s) 186
Cfr13I GGNCC 3 cut(s) 25, 123, 160
Cfr42I CCGCGG 1 cut(s) 208
Csp6I GTAC 1 cut(s) 131
CviAII CATG 3 cut(s) 94, 187, 250
CviJI RGCY 3 cut(s) 55, 63, 161
CviKI_1 RGCY 3 cut(s) 55, 63, 161
CviQI GTAC 1 cut(s) 131
DdeI CTNAG 2 cut(s) 21, 232
EaeI YGGCCR 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 58
Eco47I GGWCC 2 cut(s) 25, 123
Eco81I CCTNAGG 1 cut(s) 232
EcoO109I RGGNCCY 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 3 cut(s) 97, 190, 253
FaiI YATR 3 cut(s) 95, 188, 251
FatI CATG 3 cut(s) 93, 186, 249
HaeIII GGCC 2 cut(s) 63, 161
Hin1II CATG 3 cut(s) 97, 190, 253
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 3 cut(s) 183, 212, 237
Hpy166II GTNNAC 2 cut(s) 123, 172
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 2 cut(s) 123, 172
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 1 cut(s) 90
HpyF3I CTNAG 2 cut(s) 21, 232
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 3 cut(s) 97, 190, 253
KpnI GGTACC 1 cut(s) 134
KspI CCGCGG 1 cut(s) 208
LmnI GCTCC 1 cut(s) 60
LpnPI CCDG 3 cut(s) 8, 34, 126
MaeII ACGT 1 cut(s) 108
MboII GAAGA 2 cut(s) 148, 166
MnlI CCTC 3 cut(s) 38, 121, 212
MspA1I CMGCKG 1 cut(s) 207
MvnI CGCG 1 cut(s) 207
NlaIII CATG 3 cut(s) 97, 190, 253
NlaIV GGNNCC 1 cut(s) 132
NspI RCATGY 1 cut(s) 253
PagI TCATGA 1 cut(s) 186
PciI ACATGT 1 cut(s) 249
PfeI GAWTC 3 cut(s) 183, 212, 237
PpuMI RGGWCCY 1 cut(s) 25
PscI ACATGT 1 cut(s) 249
Psp1406I AACGTT 1 cut(s) 108
Psp5II RGGWCCY 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 3 cut(s) 25, 123, 160
PspPPI RGGWCCY 1 cut(s) 25
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
SacII CCGCGG 1 cut(s) 208
Sau96I GGNCC 3 cut(s) 25, 123, 160
SetI ASST 4 cut(s) 27, 57, 111, 132
Sfr303I CCGCGG 1 cut(s) 208
SgrBI CCGCGG 1 cut(s) 208
SinI GGWCC 2 cut(s) 25, 123
SsiI CCGC 2 cut(s) 205, 207
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 1 cut(s) 38
TaiI ACGT 1 cut(s) 111
TaqII GACCGA 1 cut(s) 140
TfiI GAWTC 3 cut(s) 183, 212, 237
TspDTI ATGAA 1 cut(s) 175
VpaK11BI GGWCC 2 cut(s) 25, 123
XceI RCATGY 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.