Rw2G012030

Small nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0002981
Physical Location & Seq
Forward (+)
12301064 .. 12304837
3774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G012030.1

Sequence Viewer

Length: 333 bp
ATGTTGATGTCCGGCAGGCCAATGGAAGAAGATGGTGCCAGGAATGAAGAAGAGGAGTTCAATACAGGACCACTCTCGATTCTCATGATGAGTGTCAAGAATCATACACATGTCCTCATCAATTGCCGCAACAACAGAAAGCTTTTTGGCACTGTGAGAGCATTTGATCGGCACTGCAACATGGTTCTGGAAAATGTCAAGGAGATGTGGACTGAGGTTCCAAGGACCGGAAAAGGCAAGAAGAAAGCCCAAGCGGTAAACAAAGACAGGTTCATCAGCAAGATGTTTATCCGTGGAGATTCTGTGATCATCGTTCTCAGGAATCCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

110

Amino Acids

12.72

Weight (kDa)

9.86

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 33 - 105 3.4e-18 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 35
AciI CCGC 2 cut(s) 127, 254
AfiI CCNNNNNNNGG 1 cut(s) 227
AflIII ACRYGT 1 cut(s) 109
AgsI TTSAA 1 cut(s) 61
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
AoxI GGCC 1 cut(s) 17
AspS9I GGNCC 2 cut(s) 68, 225
AvaII GGWCC 2 cut(s) 68, 225
BanI GGYRCC 1 cut(s) 35
BccI CCATC 1 cut(s) 26
BciT130I CCWGG 1 cut(s) 40
BclI TGATCA 1 cut(s) 306
BisI GCNGC 1 cut(s) 127
BlsI GCNGC 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 40
Bme18I GGWCC 2 cut(s) 68, 225
BmgT120I GGNCC 2 cut(s) 68, 225
BmiI GGNNCC 2 cut(s) 37, 219
BmrFI CCNGG 1 cut(s) 40
BsaBI GATNNNNATC 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 221, 292
BsaWI WCCGGW 1 cut(s) 227
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse8I GATNNNNATC 1 cut(s) 287
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 2 cut(s) 221, 292
BseJI GATNNNNATC 1 cut(s) 287
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMII CTCAG 2 cut(s) 204, 331
BseRI GAGGAG 1 cut(s) 68
BshFI GGCC 1 cut(s) 19
BshNI GGYRCC 1 cut(s) 35
BsiSI CCGG 2 cut(s) 12, 228
BslI CCNNNNNNNGG 1 cut(s) 227
BsnI GGCC 1 cut(s) 19
Bsp143I GATC 2 cut(s) 166, 306
BspACI CCGC 2 cut(s) 127, 254
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 2 cut(s) 205, 330
BspHI TCATGA 1 cut(s) 84
BspLI GGNNCC 2 cut(s) 37, 219
BspT107I GGYRCC 1 cut(s) 35
BssECI CCNNGG 2 cut(s) 221, 292
BssMI GATC 2 cut(s) 166, 306
BssT1I CCWWGG 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 17
BstDEI CTNAG 2 cut(s) 213, 317
BstDSI CCRYGG 1 cut(s) 292
BstKTI GATC 2 cut(s) 169, 309
BstMBI GATC 2 cut(s) 166, 306
BstNI CCWGG 1 cut(s) 40
BstNSI RCATGY 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 38
BsuRI GGCC 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 292
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 2 cut(s) 150, 172
Cac8I GCNNGC 1 cut(s) 17
CciI TCATGA 1 cut(s) 84
Cfr13I GGNCC 2 cut(s) 68, 225
CviAII CATG 3 cut(s) 85, 110, 181
CviJI RGCY 3 cut(s) 19, 142, 248
CviKI_1 RGCY 3 cut(s) 19, 142, 248
DdeI CTNAG 2 cut(s) 213, 317
DpnI GATC 2 cut(s) 168, 308
DpnII GATC 2 cut(s) 166, 306
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 221
Eco47I GGWCC 2 cut(s) 68, 225
EcoRII CCWGG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 3 cut(s) 88, 113, 184
FaiI YATR 4 cut(s) 86, 105, 111, 182
FatI CATG 3 cut(s) 84, 109, 180
FbaI TGATCA 1 cut(s) 306
Fnu4HI GCNGC 1 cut(s) 127
Fsp4HI GCNGC 1 cut(s) 127
GluI GCNGC 1 cut(s) 127
HaeIII GGCC 1 cut(s) 19
HapII CCGG 2 cut(s) 12, 228
Hin1II CATG 3 cut(s) 88, 113, 184
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 4 cut(s) 79, 100, 299, 322
HpaII CCGG 2 cut(s) 12, 228
Hpy166II GTNNAC 2 cut(s) 210, 259
Hpy188III TCNNGA 5 cut(s) 76, 85, 97, 188, 319
Hpy8I GTNNAC 2 cut(s) 210, 259
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 1 cut(s) 177
HpyF3I CTNAG 2 cut(s) 213, 317
Hsp92II CATG 3 cut(s) 88, 113, 184
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 2 cut(s) 166, 306
LpnPI CCDG 8 cut(s) 25, 25, 51, 52, 173, 241, 253, 304
MalI GATC 2 cut(s) 168, 308
MboI GATC 2 cut(s) 166, 306
MboII GAAGA 5 cut(s) 38, 41, 59, 62, 253
MfeI CAATTG 1 cut(s) 121
MluCI AATT 1 cut(s) 121
MnlI CCTC 3 cut(s) 46, 125, 208
MslI CAYNNNNRTG 1 cut(s) 108
MspI CCGG 2 cut(s) 12, 228
MspR9I CCNGG 1 cut(s) 40
MunI CAATTG 1 cut(s) 121
MvaI CCWGG 1 cut(s) 40
NdeII GATC 2 cut(s) 166, 306
NlaIII CATG 3 cut(s) 88, 113, 184
NlaIV GGNNCC 2 cut(s) 37, 219
NspI RCATGY 1 cut(s) 113
PagI TCATGA 1 cut(s) 84
PciI ACATGT 1 cut(s) 109
PfeI GAWTC 4 cut(s) 79, 100, 299, 322
PkrI GCNGC 1 cut(s) 128
PscI ACATGT 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
PspN4I GGNNCC 2 cut(s) 37, 219
PspPI GGNCC 2 cut(s) 68, 225
RseI CAYNNNNRTG 1 cut(s) 108
SatI GCNGC 1 cut(s) 127
Sau3AI GATC 2 cut(s) 166, 306
Sau96I GGNCC 2 cut(s) 68, 225
ScrFI CCNGG 1 cut(s) 40
SetI ASST 3 cut(s) 144, 219, 272
SinI GGWCC 2 cut(s) 68, 225
SmiMI CAYNNNNRTG 1 cut(s) 108
Sse9I AATT 1 cut(s) 121
SsiI CCGC 2 cut(s) 127, 254
StyD4I CCNGG 1 cut(s) 38
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 154
TaqI TCGA 1 cut(s) 77
TasI AATT 1 cut(s) 121
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 4 cut(s) 79, 100, 299, 322
TscAI CASTG 2 cut(s) 157, 179
TspDTI ATGAA 2 cut(s) 60, 262
TspGWI ACGGA 1 cut(s) 281
TspRI CASTG 2 cut(s) 157, 179
VpaK11BI GGWCC 2 cut(s) 68, 225
XceI RCATGY 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.